Array 1 295445-297748 **** Predicted by CRISPRDetect 2.4 *** >NZ_OCMZ01000002.1 Nitrosovibrio sp. Nv4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 295445 28 100.0 32 ............................ AGGGAGTCCAGGCGGATATGGCGACATTGAAA 295505 28 100.0 32 ............................ AGCGAGAACGCTGGAAAATATCAAACTCAAGT 295565 28 100.0 32 ............................ TCGATCACTTCCGGTGGCGCACCCATTGCCGC 295625 28 100.0 32 ............................ TTGCCTATCCCACCCCCTTAAAATATCATCAT 295685 28 100.0 32 ............................ AGTACGAGCTGATGGGATTCGTCACCAAGAGG 295745 28 100.0 32 ............................ AGGGCGCGGATTATGCGATCGATGCACTTGGC 295805 28 100.0 32 ............................ TGCTGGCGGCGGTCGTGCGGGGGCGCGAGTGA 295865 28 100.0 32 ............................ AAAGCCCGTTTGTTTCCGCGCAGCCGGATATT 295925 28 100.0 32 ............................ GTAGGGGGATGATGAAAGGTGTCCGGCCAGCT 295985 28 100.0 32 ............................ TGAACAAATTCAGGGGGGAAACGGTAAACACA 296045 28 100.0 32 ............................ GAATAGGTCTGTCACCAAAGCAGACTTGGCCG 296105 28 100.0 32 ............................ ACCGTTCGCCTCAGTCTTAGGCCCCGGCGAAC 296165 28 100.0 32 ............................ AGTCCTTACGTATGGGTTGCGACGATAGCCCA 296225 28 100.0 32 ............................ AGTTGGGCCAATAAGGCGCTGACGGCGGTAAT 296285 28 100.0 32 ............................ TGTATCTGTGCGGCCGCTATGCCCTGATCCAC 296345 28 100.0 32 ............................ TATTGTAGAGCTTGGCCAGATGAATTGCCAAG 296405 28 100.0 32 ............................ GATACCGCTGGGCAGGTAAACACGGGCTGGGC 296465 28 100.0 32 ............................ AGCACGTAATTCGCGCCATACTGCGGCCGATA 296525 28 100.0 32 ............................ GTTTTGATGTAGGGAACTTGCTTGGCTACAGC 296585 28 100.0 32 ............................ TTGGCTGCGCGGCGGAAGGTCATACGCTCTCA 296645 28 100.0 32 ............................ ACACGCCCATGCCGTAGCCTGGCGGAACTATT 296705 28 100.0 32 ............................ GCAGAAGCCGAGGCCGAAGCGCAGCGCATTGC 296765 28 100.0 32 ............................ GCGATCCCGGCAGCTATCACCATTGTTTTTTG 296825 28 96.4 32 ....................T....... AAGCCAGCAGCGCCGGTAAAAAGCTTGTCCGC 296885 28 100.0 32 ............................ TGCCCTTTCGTCAGGGTCAGTGTGCCGGAATG 296945 28 100.0 32 ............................ ATGCCGCCGGGTTTGACCTTGACCACGTCAGT 297005 28 100.0 32 ............................ GGAGCAGCGGCCAGCATGAAGATAGTTCAGCC 297065 28 100.0 32 ............................ AGATGATTAAGTCCCAAGTTAAGCCCACAACC 297125 28 100.0 32 ............................ TGCCGAAGTTATCGACGATCTGCTCCAGCATA 297185 28 100.0 32 ............................ GTAAATGGCAGGAGAGACTGAACCATGTCAAC 297245 28 100.0 32 ............................ TGATAGACTTCACCCCGGCGAAGCATTTTTCC 297305 28 100.0 32 ............................ ATTCCAGCAGGGAGGTATCAGGTAGCGGTGAC 297365 28 100.0 32 ............................ AGATAACAGATCAGTGATGCCGACGCCTCCGC 297425 28 100.0 32 ............................ AATCATTCGGGGCCGCATCGATACATTGATGG 297485 28 100.0 32 ............................ AACTGGCGCATCCAATGACGCGGGCGGTATGT 297545 28 100.0 32 ............................ AAGCACCTTGAGACGCTTAAAGCCGATATGCC 297605 28 96.4 31 ...........................T CTTGCTTTGAGGACTACCGCGTACAGCGAGG 297664 27 89.3 30 ..........C......A.....-.... AGTCAATTGATTGCCTCGTACTGAAGGGAG 297721 28 78.6 0 T........T.....A...AT...C... | ========== ====== ====== ====== ============================ ================================ ================== 39 28 99.0 32 CTTCACTGCCGGTTAGGCAGCTCAGAAA # Left flank : AACGATCTTGCAAGATTGATGGAATTGGGTTGGATGACAGGGATGCGGGATCATGCGAGCGTGGGGGAAATTACCTTAGTACCCCCTCATGCGAAACATTGGGTAGTTCGGCGCGTCCAGGCCAAAAGCAACCCCGAGCGGGAACGGCGTCGATTAATATTGCGGAAAAATGTCAGCGCCGAGGTAGCGAGACAGGTTATACCCGACAGCACCGCCCGACGGCTACGCTTGCCCTACTTTGTCCTTACCAGCCAAAGCACTGGGCAACAGTTCCGCCTGTTTATAGAACATTTACCGCCTCAGGAACAAGCGGTTGAGGGCAAATTTGGCGCTTATGGACTAAGCTCGGTAGCGACCGTACCATGGTTCTGACCCTTTTTTTACCAGGGCCTTTAGGTTCTAAAAATCAAGCTGTTATCCATTCCTCTAAAATTTAGGAATCGCGATTAATTTTCGCATTTGCTCTTTAACAATTAATATATTAGCGAGTTTTTCTTGTA # Right flank : AAGAGGAATAAGTACTCAGCATAGCCACTGCGAATTTCGCCGAATACTTTTACTGGGAAAGCACCTCAGAAATAGACGAATACAGGTAACATCGCCGCGTCAACCTCCACTACAAATCGCGAGATTCCAGAATAGAATTGCTCATACTTCAGCCCCCAAATCTAGGAAATTTTATTCGAGTGCTGGGTCGACCAATCGTGTGCGTCACTTGCAGGGTCATGTTTCGCGCCCCAGCGGAGCAGTTCCTGAATTGCAGGTGACAAATCCAGGCCTTTTTCCGTGAGTGTATAGATTACCCTGCGGGCGTTTACAGGATCGCGTTGCCGCAGGACGATATTGGACTCCTCCAGCTTTTTCAGTCTGTCGGAAAGTATATTCGAGGCGATTTTCTCGGGCGATGTCAGGAAATCGCGGAAGTACTGCTTGCGCATGAACATGATGTCCCGGATAACGAGCAGGCTCCACTTGTCACCCAATACGTCAAGCGCGCAGCTAACGGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGGTTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGGTAGGCAGCTCAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //