Array 1 252717-255856 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSAD01000001.1 Bifidobacterium pseudocatenulatum strain AF12-8A-LB AF12-8A-LB.Scaf1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================================================================= ================== 252717 29 96.6 32 ............................A AGGTGGCTGAAATACGTCGTAATGGCGATAAA 252778 29 100.0 32 ............................. ACTGGGTATGGCGCAAAGAGAGCAACCCCGCT 252839 29 100.0 32 ............................. GTAGTAGCGATAAACCATGCCATACCACAACA 252900 29 100.0 32 ............................. ACCTGAAAACCATCATTAGTGATGATAAAATA 252961 29 100.0 32 ............................. TTGCATGTAGATCTCGGACTTCCGGTCAGTGT 253022 29 100.0 32 ............................. AAATGGATGACGAAACCACCGAGGAGAGGGAC 253083 29 100.0 32 ............................. TCTCGGTACAGACAATCACATCCCTTAGTTAT 253144 29 100.0 32 ............................. CGCCATTACTGGCCGCGATGGTACTGAGCGTA 253205 29 100.0 32 ............................. CCCAGCTAGAGTACGAAATCGGACGGCATACC 253266 29 100.0 32 ............................. ATCTCGACCAGCTCAGGGAACAGCTCGACAAT 253327 29 100.0 32 ............................. GTCCGGGTGAATATCGGTAAAAGAGGTGTCAG 253388 29 100.0 32 ............................. GCGGCGTGCTGGCGATCGTGAAGCTGGCAACG 253449 29 100.0 32 ............................. TGGCGAGGAAAACAAGTACCTCCTGCCGGACA 253510 29 100.0 32 ............................. GAACTCAAGGCGTCGCCAATGTCGGCCATGCC 253571 29 100.0 32 ............................. AGATATCAAGGGTGGAAGGATGATGGGGGCGT 253632 29 100.0 32 ............................. CGCCGATATCGAAGCGATCAAACAGCTTGTCG 253693 29 100.0 33 ............................. CATCCGACTCGCAAGGACAAGGGCACCCATCAA 253755 29 100.0 32 ............................. TTTACAGTGACGTTGGCCGCTCCTGCGCCGGT 253816 29 100.0 32 ............................. GTGTTTGAAAGCGCTTGTGAATTGGATGAAAC 253877 29 100.0 32 ............................. AACCAAGGGCACCCCGACACCGGACGGGGTGG 253938 29 100.0 32 ............................. ACGATACGTAGCACTCGCACCCGCAGACAAGT 253999 29 100.0 32 ............................. GCTTCCGTGCTCGCACCCCCCGCCGTGATCTT 254060 29 100.0 32 ............................. GCAGACCGGCGTAGCGAACACCATGCGATATC 254121 29 100.0 32 ............................. AAGGCGCGTGTCAGTTTGGATATGGCCGGACG 254182 29 100.0 32 ............................. GACTCCTGGGCGCGACGCTCCGTCTCTTGGGC 254243 29 100.0 32 ............................. AAACGTCGGCATGTGATAACTTCCCTTGAGCC 254304 29 100.0 32 ............................. CAATTGGACAAACGAGAACAGGACGGCAACCA 254365 29 96.6 33 ............................A TACGGTTGCGCGTTGTTTTTCGAGGACAAGCGT 254427 29 100.0 32 ............................. TTCCACGACAACCTGGATCGGCCAATCGTGGA 254488 29 100.0 32 ............................. ACTACGACCGTTATGGCCGGGACAAAGGCGAT 254549 29 100.0 32 ............................. GCGCCGCCGTTGTTGACCACGGAAAAGTGGGG 254610 29 100.0 32 ............................. AGGGGCAACGCGCCACTGCCCATCGACACCAG 254671 29 100.0 32 ............................. AGGCAGGAAAAATACGCGCCGCATACGCCGCA 254732 29 100.0 32 ............................. CATTCCCGCTGTGTCTCACGTGAACCAAACCG 254793 29 96.6 32 ............................T TATGCGACACGACTCGCCATCGCAGACCGCGC 254854 29 100.0 32 ............................. GGGTTAGGGGTAATGGAGCCCCTGTGCTTGTA 254915 29 100.0 32 ............................. GAGGAGCCACGCATCACCCCCCGTGACGTGCA 254976 29 100.0 32 ............................. GGGTTGATCTCCTTCGTGCCGAACGCCGCCGC 255037 29 100.0 32 ............................. TGGTGGCCCGCCGATTCGGATACGCTTTGAAC 255098 29 100.0 32 ............................. GTGCTGAGCGTACGGTATGTGGTCATAGTTGG 255159 29 100.0 32 ............................. CAGATCATCGCCATCTACACCAGCCAGGAAAA 255220 29 100.0 32 ............................. CATGCGAGCGAGTTAGCCGAATCTGGCTTGTC 255281 29 100.0 31 ............................. TCGGGAGAGGCGAAGAACGTGCTGATGGCGT 255341 29 100.0 32 ............................. AGTTCCATCGCCGTTTCCGGTGCTCGATGCTG 255402 29 100.0 32 ............................. TGCTGCTTCGGCGTCACCACTGGGGTAGTTGA 255463 29 96.6 32 ............................A CTTTGATGCCGACCGTGCAGGCCATGCTGCCG 255524 29 100.0 32 ............................. AGTAGAGTTTGCGCAGATTCCGATACCGGGCG 255585 29 100.0 32 ............................. CCGCAGTTCGACCTCGACTTCATCACCCGGCT 255646 29 100.0 153 ............................. CGAGGCATGAAAAACCGGAAGCAAGCCCGCGCGAATCGGCTGTTATCTCAAGTCTGCACGGGGACTTCCGGCAATGCAAAATCATACCCCACAACCGAGAAAAGCAAGGCAACATGGCTGGATACCGAAGCAGACCAACGGAGCCGCCTGTAA 255828 29 86.2 0 ................T.........TTT | ========== ====== ====== ====== ============================= ========================================================================================================================================================= ================== 50 29 99.5 35 GTGTTCCCCGCATACGCGGGGATGATCCC # Left flank : GGGATCATGTCGGACTGTGGGATGAACGGCTGGGAGAAGTATCTGCAGGAAAATCCTATGCCGATGATGAGTGGGGATATGAGGAATGGTAGTTATTGTATTAACGGCATGCCCGGTGGGTTTACGCGGTGACCTTACTCGATGGCTATTGGAAATATCGCCAGGCGTGTTTGTGGGGCATTTGGATGCACGTGTTCGTGAAAAACTGTGGGAGCGAATCGTTGAACTCTCAAAGAACGGTCGTGCCATTATGGTTTATTCGGCTCGAAATGAGCAGCATCTTGCTTTTAAAGTGCATGGAGCTGAGTGGTCTCCGACAGACTGTGAAGGCTTGGAGCTTGTAAAACGTCCTTCTGGTCCAAAGGAAGTGTCGTTTGGTAGTGCTCTTCACCGTGGATGGAGTAATGCCAGTAAGTATCGGCAGGCGAAGAAGTATTCAAACTAAATGAAAAACGAATGACATGAATTTAGAAACCACGAAATTGCTATAATCTCTTAGT # Right flank : TAATTAAAACTTCGACCTGCATATAGCTTTCTGTCGAGCATAATGAGGGGCGCGCTTGCGATTACCGGTTGTATCTCGCTTCGGTGATCCGGATTCCTGGTGTTCGGAGCGTTGATGACGAGTCCACGGTTGGATGCAGAAAGCATAAGCGGATGGCGGTCGATGAAATGCCGGACGACAAGAAAACCTACGACATTAATTCGTGCGCGGTCAGCATGCCGACGGCGCACGACGGGAGGGGTCCGTCCTGGAGTCAAAGATCGAGCCAGTTCCCCAGCTCTTGACTGGCGATTATGTCTATTGGATAGTGTACCTCGCTTATGTATGGCAGGTGTACGTGCGAAAAGCGCCAAAAACATGCCCCCTAAGTGGCTTTTCTCGAAGGACATGTGCCATATATAAGCGAGAAACTTCCGGTCAAGATGCCAAATCTGCCATATATAAGCCAGATATCGCGGTTCAGTTCAGATGAACTGGGTATATGTCCATAAATTTCGACG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.21, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCATACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //