Array 1 20028-19764 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNBC01000008.1 Thermus arciformis strain CGMCC 1.6992, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 20027 36 100.0 42 .................................... TCAGACACCATTTGCCACCGCCGCATCTCCATCACCTCCACC 19949 36 100.0 38 .................................... GGGGTCGAGGCCCGCGGAACTAAGCGACTCCTCCACGG 19875 36 97.2 40 ................T................... AGGTTGAGGCGGTAGGTATTGGTGTACCCAATCCTCTCCC 19799 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 4 36 99.3 40 GTTGCAAGAGCTTGAGCCCCGTAAGGGGATTGCGAC # Left flank : GGGCCCGCAGGAAGCGGCGCCGCTAAGTGCCCACCCCCTGGGGTTCTGCAACCCCCTGGGGGAGTGCAGGCCCAGCGGCTGAAGGCGGCCCTTTTGGGACGGGGGGAGTACACGCCCTTTTACCTCTGGCGATAGGGCGGGCCTTGGCTATACTTGTCAGCAAAATTACGATGCAACCGGCTTTCTTTGGACTTTGAAAAGTAAAGCTCAGTGCAGGAGCCCTTTCTTCACCGAAATTTTGACCTGGCCCAACGTTGCGGTGTGTGCTATACTCCCCCTAACCCGGACCTCCGGGTGGGGACCTTGAAAGCCAGTTTTCCTCTTGCCGAAGGCGAATATGCGCTTTCCCCTTCTCATCGCCCCTTCCTCCTGTGGCTTGCCATCGGCCCAAACCCCCGAAAAACCCCGTTATTCGCCGTGTGCATATTCCAAGCTTCATCTTTCTCACAAACCCCCCCCTCTAGCGGTGCCGTCCAGGACGGGGTTCTGAGGGGGGTAGA # Right flank : ATGTAGGAGGTGAATATGCGGCGGATATGGCTTTTGTTCGTGTTGGCCCTGAGCGCTTGCGCACCTTCAGTAACTCAACCCCGTCCCGTCTACAAGGCAACGGCCCAGGAGCTGATCGCCTATCTGATGGCCGAAGCTCCTTCCATTCAGCCCCACCAATGGTTTGAGCGCTGGCAAGTGGTCCGAGCGTCCGAAACCACGGTGGAGCTCATCACGTATCCCCTCATCGCGTTCCGCGCCCTCGGAGCTACAAGTCCGGCTAAAGCTACCTGTAGCGCTCTCAATCAGGGCCAGGGGGCCATCATCACATGTTATGGCGAGTTCACAGATAGCCTCTATGGACTCATAGACAAGCGTTTTGAACGGCTCTGATGGCCCGCAAACGCTCCCCCAGGAGAATTGCAAGAGATTGAGCCCCGTAAGGAGATTGCGACAGAAGCTCGCGGCGGAGGGTTTGGGCGTCCTTCTTCTCGTTGCGAGGAATTGAGCCCCGTAAGGGG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGAGCTTGAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 1 6055-5866 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNBC01000065.1 Thermus arciformis strain CGMCC 1.6992, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================== ================================ ================== 6054 42 92.9 31 CCG....................................... CTGTCCGCCGGGACGGCTTCAGCTGGTCCCT 5981 42 100.0 32 .......................................... AAAGGAGCCGGAGCCACCCGCATCACGGGGAA 5907 42 100.0 0 .......................................... | ========== ====== ====== ====== ========================================== ================================ ================== 3 42 97.6 32 AGAGGTTGCACCGGCCCGAAAGGGCCGGTGAGGATTGAAACC # Left flank : TGGAGGGGACGG # Right flank : TCCGCTGGCCATAAAAGGGCAACGGCCCCCTGGAGGGCCGCGCGTCCTGCACCGGGCTATCGGGAACCCAGGCCCAGCCCGATGGGTTGTCCTCATCCTACTACCCCTCGCAGCGGAGCGCAACGGTCCATCCTCCAGCACTTTGGTGTCAAGAATGACCTTCAAGCCTGCGGAATATCTCCTCTTCGCTCATCTTGGCCCGGCCGACCACCCTAGCAAGAAAAGCGGAAAGCTGCTTCTTAGCCTTCTTGCGGTTCACCTCCTCCTCCAAGAGGCGCAGCAGTCTTTTTTCCCAGCTCGGGCCGTAGGCCTTTTTGAAGCGCTCCAGGGCCTTTTCCATCTCAGCGGGCAAGGTCATACCTTCATCCTATCCCCGATAGGCCCGCCACAGCTCTCACCCGGCCCAGGTGGCCAGGGCGAAGGTCCTCATCGCTAGGCGGTTTCGCACGGTCCATCCCCACGTGTGTGGGGACTGAAACCCCGTCCGCCGGGACGGGTTC # Questionable array : NO Score: 5.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGAGGTTGCACCGGCCCGAAAGGGCCGGTGAGGATTGAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-19.60,-21.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [30.0-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,5.24 Confidence: HIGH] # Array family : NA // Array 1 28708-28448 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNBC01000027.1 Thermus arciformis strain CGMCC 1.6992, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 28707 36 100.0 39 .................................... TGTGAACATCATGCCGCCCCATTCACCCCCCATTACGGG 28632 36 100.0 39 .................................... CCGAAGGGTCCAACTCCCGCTACCGAAACAATCAGAGAA 28557 36 100.0 37 .................................... CCTCGTACCAGGCGGTGCGCCAGTCCCTACGCATGGC 28484 36 91.7 0 ........A.C.......................C. | C [28451] ========== ====== ====== ====== ==================================== ======================================= ================== 4 36 97.9 39 GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Left flank : GTTGACCAGGGCCACGGGGAGGCCCTTCTCGGCCAGGAGGCGGAGGAGGGGGAGGTGGTAGGGGCCCGTGGGCTCCAGGGCGACCCAGGCGGGGTTGTGGTGGGCGAGGGCGGCGAGGAGGGCTTGACGGCCTTCGGGGGTGTTGGGGAAGCGGAGGCGGGTGGGTTTGGGGGAGTTGGAGACCAGGGCCAGGTCCAGGTGGGGTTTGCTGACGTCAATACCGGCGAAGGTCATGGGCTCTCTCCTTTTTGGTAAGCTGAGGGAGGTGGCCACCCGACCCTGTGGGCCTTCCATGTGGATGCGGTCTTTGACGACCGGGATACTGTGCGGCGGGGAGGCCGGGGCGGGTGGCTACCCATCAATCCCGCGGGCGTGGGTGCCCGGCAACCGGGGCGGTAGGGCCTCCCTCAGGGGGCAAGATACATAGGGCCTCCCTCAGGGGGCAAGATACATGCGACCGTGACGGCGGAGGCTCGCCGCCTCCGGAATGGCCCTGTCCA # Right flank : CATGGGGTCTTTTGGTTAGCCTTTCCCCATGGGAAAGCGTCTTTATGCCGTGGCGTACGACATCCCGGACGACACCCGCCGGGTGAAGCTGGCCAACCTCTTGAAAAGCTACGGGGAGCGGGTCCAGCTCTCCGTGTTTGAGTGCTACCTGGACGAGCGGCTTCTGGAGGACCTGCGGCGGAGGGCCGGGCGGCTTCTGGACCTGGGCCAGGACGCCCTGGGCATCTACCCCGTGGCGGGCCGGGTGGAGGTTCTGGGCGTGGGGCCCTTGCCGGAGCCCCGGGAGGTCCAGGTGCTGTGAGGCCCCGCGTGCACACCTCACACGGGCCCCGGGGGGGGCCCTATATACTCGGGCCATGCCTGGGGACGGCCTGAGCGTGGCCCTGGCGGGCCTCCTTCACGACGTGGGCAAGCTCTACTCCCGGGCCTTTTGGGGGGAGCGGGACGAGCGGGTTCCCGACCGCACCCACACCGCTTACACCGCCCACTTCGTCCGGGAG # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 1 28211-27956 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNBC01000022.1 Thermus arciformis strain CGMCC 1.6992, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 28210 37 100.0 35 ..................................... CGCATCGGGGGGTCCAACTCCGTCAAGGAGTGCCA 28138 37 100.0 36 ..................................... AGTTCGTGAGCTGAGCGAAGACCAAGCCCGACAGAG 28065 37 100.0 36 ..................................... GCTCGATCGCGCGCTCCACGTCCGAGAGGTCCAAGA 27992 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 4 37 100.0 36 CCTGCAACGTAGCCAAGCTGTGAAGCTTGGATGTAAC # Left flank : TCCCCCGTCCCCAGGTAGGGGTAGTGCCACAGCCTCAGGGGAAGCCGCTTCCCCAGGGCCGCCGCCCTCGGAAGGACCTCCACGGGGTCCAGGAGCCTCCGGCCCCTGAGCAACTCCCCGTAGCGCCGGGCCGCCCGGGCCACCCGGGCAAGCCTGGGGGAGGCCCCCTTCGCCAGGCGGGCAAGCGCCTCCTCCCCCTGGCCGGAGGCCTGGGCGAGCAGGAGGAGGGTCCTCACCGGGCCCTCGAGGGCCGCGGCCAGCCCCTGGGGGTCCTTCGGGGCGAGGGCCTCCCGCACCGCCTGCACCAGCAGGCGGCGGGCCCGGTAGGGGGAGGCCACCAGGAGCCCCCCGTCCCTTAGGAGCTCCCGGGCCAGCCCGGCCAGGGTGCGGTAGGGAACCCCCAGCCTGCGGGCCACCGCCCGGTTGGGGGTGACGTGTATCAGTCCTGGGTCCTCGGCGCGCACACCTTACCTCCTTTCTTCGCTATTTTCGCCTGCCTT # Right flank : AGGCGCCGAATACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTGCAACGTAGCCAAGCTGTGAAGCTTGGATGTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.90,-11.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [8.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 1 44839-45258 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNBC01000013.1 Thermus arciformis strain CGMCC 1.6992, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ======================================== ================== 44839 38 100.0 40 ...................................... CATTAGATTGGGTGCGGCCTGAGGCGGAGCCAGGTCGCTT 44917 38 100.0 37 ...................................... AAACTCCGGGTCTGCCCCAAGCCTGCGAACCAACATG 44992 38 100.0 38 ...................................... GGGATAGACAATCTCCCCCTCAACGACTTCTATATCGT 45068 38 94.7 40 ....................................CA CCCTGGACCTGGTGCGCGCCCCCGAGCCCGTCTCCCTCTA 45146 38 100.0 37 ...................................... AAACTCCGGGTCTGCCCCAAGCCTGCGAACCAACATG 45221 38 92.1 0 ................................AT...G | ========== ====== ====== ====== ====================================== ======================================== ================== 6 38 97.8 39 GTTGCAAGAGCTTGAGCCCCGTAAGGGGATTGCGACTC # Left flank : CATCCAGCTCTTTGAGGAGCGCTTGTTGGAGGAGGTGAGCCACCCTTTGGGCTTCCGCAAGCCCCTGGGGGAGACGATTGAGGTGCAGGCTCAGCGGCTGAAGGCGGCCCTTTTGGGGCGGGGGGAGTACACGCCCTTTTACCTTCGGGGCTAGGGGGTACTTGACACGACGGAACGGGCGTTTTTTACGCTTTCACAAAGCGAAGTAAGGTGGAAAAGGGGCTTTTTGGGGCAATTTTGGACGGGGTACACCGTTTCAGCGAGATGCTATAATGCCTTTGTCCGGACCTCCGGACGGGGATCTTGAAAGCCGGTTTTTCCCTTGCGGAAGGCGAATATGCGCTTTTTCTTTTCATCGCCCCTTCCTCTTGTGGCTTTCTATCGGTGTAAACCCTCAAAAACCCCCGTTATTCGCCGTGTGCATATTCCAAGCTTCATCTTTCTCACAAACCCCCCCTCTGGCGGCGCCGTCCAGGACGGGGTTCTGAGGGGGGTAGAGT # Right flank : GTCTTGCCTGTCAAGCCACCCCTTGGGCTGGCTGACCGGCGTAGTACTCCCTGAGCCGCCCCATCATCCGCCTGAGGAGCTTGTGGGCCACGGCCAAGAGCGCCTGCTTTTTTGTCTTCCCTCGGGAAAGCAAACGGTGGTAGAAGGCCCGCATCTCTGGGTCATGCCGCACCGCCACCAAAGCCCCCATGTAGAGCTTCCGCCGCAAAAGGGGAGGCCCCTTCCTGGAAAGCCGACCCCTCTCCACGCTCTTCCCCGACTCCTCCCGCTCGGGGATGAGCCCCGCGTAGGAGGCCGCCGCCTTCGCCCGGCCCCAAAGCTCTGGCGGCAGGAGGGCCAGCACCGCCGCCGCCACCTGGGGCCCCACCCCGGGCAGGGCCATCAGGACTTCCGCCTCGGGGAGGGCGGCGAGGAGGGCTTGACGGCCTTCGGGGGTGTTGGGGAAGCGGAGGCGGGTGGGTTTGGGGGAGTTGGAGACCAGGGCCAGGTCCAGGTGGGGT # Questionable array : NO Score: 2.95 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGAGCTTGAGCCCCGTAAGGGGATTGCGACTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.90,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //