Array 1 49244-47594 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCMX010000001.1 Escherichia coli strain PE01_656 .PE01_656.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 49243 28 100.0 32 ............................ TGTTGGCGCTCCGGCGCTGGCCTGCGTTCTGT 49183 28 100.0 32 ............................ TCCCAACCCCACCCACTTACACCCATCTCATC 49123 28 100.0 32 ............................ AATACGAAAAGGCAATGTGTATTTTTTTTTCA 49063 28 100.0 32 ............................ CTTATCTTCACAATTCATATATAGATTTATTC 49003 28 100.0 32 ............................ TGTCTGCCAGTGGAGGCGCTCCCTGATGTGGC 48943 28 100.0 32 ............................ ACAAACGACAGACAACAAAGACATCAATTAAT 48883 28 100.0 32 ............................ TGAGATACTAAACCTTGTATATCTCTAAGACC 48823 28 100.0 32 ............................ GTTACGAATATTAAAACCCGCCAATAGATTTG 48763 28 100.0 32 ............................ AAGTGGCAATACGTTGTGTGTGCCGGTATTAC 48703 28 100.0 32 ............................ TGCTTCAAAGATTGAGAAGGAGACGAGAATGT 48643 28 100.0 32 ............................ TAGCCAAAATTTTTTGGGGTGTCGGGGCGAAG 48583 28 100.0 32 ............................ AGTTACCTTCGGAAAAAGAGTTGGTAGCTCTT 48523 28 100.0 32 ............................ CCAACGACAAAACCTGTCGAGCCTTCCCGCAA 48463 28 100.0 32 ............................ CCAACATTTCGAATGTGTCACCTCAGCGGCAA 48403 28 100.0 32 ............................ AACCACCTGCAAGACGGTTTTTGTTTTTCACA 48343 28 100.0 33 ............................ GGACGCGGGACACTGACCACAGGCAGCGTTTAT 48282 28 100.0 32 ............................ CATTCCGGACTGGCATCAATAGCAACCGGAAT 48222 28 100.0 32 ............................ GGAACCGTGGCGGCTCGGTGGTTCTAGAGATC 48162 28 100.0 32 ............................ TTGTTGCGTGTTGTCGCATCCAGGATGCGACA 48102 28 100.0 32 ............................ TTCAGCAGCTCTCGAACACGTTCCCAACCTTT 48042 28 100.0 32 ............................ ATGCGGTTGGTAGGTGGTCGTAGACCGTCAGT 47982 28 100.0 32 ............................ GTTCCGTATACCAGTGATATGCAGAAGGAACA 47922 28 100.0 33 ............................ AGGAGCATTGGCGGAGGGAACGCGAGCGCGGGT 47861 28 100.0 32 ............................ GAATCTCGGCGCGACGGCACCCGCCACCGGGG 47801 28 100.0 32 ............................ AGTTCGCGGCAGACATACACGCCGGGAGTTTT 47741 28 100.0 32 ............................ CAGCGGGGTGATTGAATATTTTGGCATCAGAC 47681 28 100.0 32 ............................ TTTCTGCTGTTATCGCCGGGTTGCACGAGTGC 47621 27 92.9 0 .......................C-... | T [47602] ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTTTATGCGCGCCATGCCCACCGCATACAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATATAGATTGATTCGTTTGGTTACGCAATGAACACACTGTTGGTGGGACGGAGATTATGACTGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAATCGTCCCTTTTTTTAGGGCGAAATGTAACTCATTGATTTTGTTTACTGCTATTTTGAAGTCTGGAAAAAGGGGGTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : CTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 59706-58303 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCMX010000001.1 Escherichia coli strain PE01_656 .PE01_656.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 59705 28 100.0 33 ............................ ACCCCACCCACTTACACCCATCTCATCCACAGA 59644 28 100.0 32 ............................ AGTGGAGGCGCTCCCTGATGTGGCAAGCCCGT 59584 28 100.0 33 ............................ AACCACCTGCAAGACGGTTTTTTGTTGTTCACA 59523 28 100.0 32 ............................ TTCTCAAGGATGACGAGAAGCGAGAGGAATTT 59463 28 100.0 32 ............................ GAACGTTAGTGAGCGAGTGGGCGAGGAAGCGG 59403 28 100.0 32 ............................ GTGAAGCGTTGGCGAGGTGTCGGGGCGCAGCC 59343 28 100.0 32 ............................ TTTTGGGGATACCTGTGTAAACCTTGAATTCT 59283 28 100.0 32 ............................ TGGACCAGGATCGCTGTATACGCAGTGCTTTT 59223 28 100.0 32 ............................ AATAATTGTGCTTCTGCTAACTCCAAGTTTTT 59163 28 100.0 32 ............................ TTGAGCGCTACCGGAAACCGTCTGGGGAGAAC 59103 28 100.0 33 ............................ CTGGTGCTTCCTCGCTCATTCGCTCGCTACGCT 59042 28 100.0 32 ............................ TGTCCCGATTTCTGCGAGTTTGTGTTACCGGA 58982 28 100.0 33 ............................ AGAACGACCGCGCCGCCACGGTTCCGGCTGCGC 58921 28 100.0 32 ............................ GCTGGCTCTTTTCCAGAACTAAGAATGCGTTC 58861 28 100.0 32 ............................ ATGTATATCGGGACTGAAGAGCAGCGAAAAAA 58801 28 100.0 32 ............................ ATGTATATCGGGACTGAAGAGCAGCGAAAAAA 58741 28 100.0 33 ............................ TCAGAAAATCGGGACAGGATGTGCAAATGTAAT 58680 28 100.0 32 ............................ GCCTCAAAATCCCTTGCGTGTTTTTGCTCCCC 58620 28 100.0 32 ............................ ATAAAGATAATAACACAATCGTGTCTGGATTT 58560 28 100.0 32 ............................ GTGGCGCTAGCAATGAGATTTGCGGAAAAAAG 58500 28 100.0 32 ............................ GTGCTGCCCGCCAGCGTGGCGTAATTGTCACA 58440 28 100.0 32 ............................ AAAAAGTTGCGCCGCGTGACCGGCACTATAGA 58380 28 100.0 20 ............................ CTGAACGTTGAAGAGTGCGA Deletion [58333] 58332 28 78.6 0 CC..................T...C.CT | C,A [58306,58309] ========== ====== ====== ====== ============================ ================================= ================== 24 28 99.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //