Array 1 462873-464201 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030809.1 Listeria monocytogenes strain 13 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 462873 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 462939 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 463004 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 463068 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 463134 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC ACT [463146] 463202 29 100.0 36 ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 463267 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 463332 29 100.0 37 ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 463398 29 100.0 35 ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 463462 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 463527 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 463592 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 463657 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 463720 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 463783 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 463849 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 463912 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 463977 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 464043 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 464108 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 464172 29 93.1 0 .......................A....C | C [464195] ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CGTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 2593368-2590555 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030809.1 Listeria monocytogenes strain 13 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2593367 36 100.0 30 .................................... GACCTCCGGATTATTTTTCACATCTGCCTC 2593301 36 100.0 30 .................................... CTGGACCTCACCTTTAATTAAACAATAGTC 2593235 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 2593169 36 100.0 30 .................................... GATAGTAGTATAATAACTGTGCTAATATGG 2593103 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 2593037 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 2592971 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 2592905 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 2592839 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 2592773 36 100.0 30 .................................... TTTTTCACGTTTGTACTGTCTCTCCTCGTA 2592707 36 100.0 30 .................................... TAACTTTAGATACTGCTAAAGAATTAGCAA 2592641 36 100.0 30 .................................... TGTCTGAATGTAGTTAATATCTTCAACTTG 2592575 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 2592509 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 2592443 36 100.0 31 .................................... TCTCTTGCATTTGGTTCTGAATAATCTCGTA 2592376 36 100.0 30 .................................... AGAGCAATGTAGTCATTCAGCCAATGCCCT 2592310 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 2592244 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 2592178 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 2592112 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 2592046 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 2591980 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 2591914 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 2591848 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 2591782 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 2591716 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 2591650 36 100.0 30 .................................... GAAATAATATTGATAATATCGCTCTTGCTA 2591584 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 2591518 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 2591452 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 2591386 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 2591320 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 2591254 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 2591188 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 2591122 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 2591056 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 2590990 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 2590924 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 2590858 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 2590791 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 2590725 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 2590659 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 2590593 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [2590558,2590561,2590566] ========== ====== ====== ====== ==================================== =============================== ================== 43 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //