Array 1 34105-34394 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOQI01000028.1 Clostridioides difficile strain 5558-AH/ST67 5558_contig000028, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 34105 29 100.0 36 ............................. TGGTATTAGAAAGTTTGCTGATAGAATCTAGCATAC 34170 29 100.0 36 ............................. TATAGTTGTAACCGCTGATTTTAAGGAATTAAACCC 34235 29 96.6 37 ............................G CCAAGTTGAAAATTTAGAATCTATGTCTTTACACCAT 34301 29 89.7 37 .................CA.........G ATGGGAGCATTAACTTTAGCATTTGGAGCATTAGCAG 34367 28 86.2 0 ...............T....-.CT..... | ========== ====== ====== ====== ============================= ===================================== ================== 5 29 94.5 37 GTATTATATTAACTAAGTGGTATGTAAAT # Left flank : GGAGGTACAAAGTCACTAGAAAACTTTCATCAAGAGTCCACAGATATTGAGGATTCTAAATCAAGTGATAATGTACAACAGGATGCCTAGTGAGATATTAAGAATTAAAGATGAATATACTTCTTTTTGTTTCGATGAAGCTTGTATGTTTTTAGTAGATGCTATAAAAAATGATAAAAAGCTTAAATTTGAAAATGATGAAAAGAAAACTATAGATAAAAATGAGAGAAAAACTTTTGTCCAAATAGCATTAGAGAAAAAGAAAAAAGTTAATAGGTAAAATATTCTAAATGAATAGAGTGAATTAATGTTAATTTATGATATAATGATAATATAGATATTTTGCAGTGTTCAATTTCTTATATACATTGGATGTAATCATTGAAAGTACTATGATATAAGCATATTTTGTGATATATCAAAAACACTACTGGTTACTCACTGCAATTTTAATATGGTTTTATATGTGTAAGGATTTAAAATGCTCAATTTATTTTGGG # Right flank : TTTTGAACAAATACAGAAAACACTTATTTAAATAGTAAGTGTTTTTGTTGTGCTTAAATTTAATCAGTTATGTGAAATTATTATGGAATAATATTACAAATAATTAATGAAAAAATTATTAATATATTATATAATTGAACTAGAAAATACATTTAATTTATAGTGAAGGAGAATGTTATGGCATTATTTGGGGATAAAGTTGATAAAGAAGATAAAAAGAAATTAAAAGAGCAAGAAGAAATACAAAAATTCATGAATAAGTATCAATTACAAGATTTAAATGAAAAAGATTTAACTATTTTAAGAAGAATAGCAGATGATTTATTTGCAACTGGACTTATAAAAACAGGATTAGCATTGAGTTTTACAAAAATAGAAGAACAAACTAAAATAAATTATCTTAGTGCTTTAGTTGAGCAAAACTGGATGATAATTAGACAATTATCTCAATTGAATAGCAATATAGAAAAACTTGTAGAAGATAAAAAATAATGGACTGA # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.57%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 16066-16817 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOQI01000013.1 Clostridioides difficile strain 5558-AH/ST67 5558_contig000013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 16066 29 100.0 37 ............................. CTTTCAGAAAAGGGCAATAAGGAATCTTTAAGTGTAG 16132 29 100.0 37 ............................. ACAAAAGAGTGGACTATAGATGTTGTAAACTTCTTAA 16198 29 100.0 37 ............................. AACATCCTTCCAACTCCGTCACTATTTGCAGCGTCAG 16264 29 100.0 37 ............................. ATGTTTGGCGACATTGTGGGAATAGTAGTTCTTTTTT 16330 29 100.0 37 ............................. GTTCGACTTGATTCAAATTAAGTTTAACTCTTTCTTC 16396 29 100.0 38 ............................. ATTTTTCAAACAGCTTTTGGAGCTGTATCTTCGATTGT 16463 29 100.0 36 ............................. ATACTTTCAGACTGAACTTCCTTATCGCCTTCTAGG 16528 29 100.0 37 ............................. TTTTTCAGTTCTGAATCAGTTGGAGATGCTGTTGCAA 16594 29 100.0 37 ............................. TTACTTGACTGGAAGCTTCTGACTCTTGTATATGTTT 16660 29 100.0 35 ............................. AAAGTACTGTTTGCTGATTCGGTAGCGTCTTCTGA 16724 29 100.0 36 ............................. ATTGCTGCTTCTGCCAATTCGGGCATAGTAGCAGGG 16789 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 12 29 100.0 37 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : AAGCACTGATTTTTATGTGGTTGTATTGTATGAGAGTTCTGGAATAGATTCATATTGGGTTTTTATAGATACTGATACATGGACTGTTCATGATATACAGCGTTTAAATCAAAATGAAGAATTAGTATCATATCATGATGTAAACCCAAATACAGAAGCAGATAAGCATTATAATAGAGATGTTGATGACGTTAATATTATATTTGTTCCATCAGAAAATAATCCTTTTGATAATGATGTAGATGGAATAAATTAAATATTTATTATAAGGAGTTAAACTATAAATTGATATAAATATTTAAAAATAATGTATTTATGATATAATAAAACTATGGAAATTTTGCAGTGAGCGATATTTATGATAAAATGGGGCTTAGCAGTTGAAATATAAGGTATTGAGGGTGTATGATAAGTGTTATCATTTGCACTACTGCCCGCTCACTGCAAATTTAAGAGAGTTGTATATGCGTAGGCATTGAAAATACTCAACTTATTTTGGG # Right flank : TAATTTTTAAATAATAGAAATAGACTAGTATTTAGCTAGTCTATTTTTTTCTTTTCTTCTTTTTAATTCTTCCATTATAAATATAGCTGCTATAACTAAATAGTTAACTTCTAAACCAATTGCTAGGTCAACTATTGTAGTAACAGTTACATTTTTATAATTACCTTTTTCTAATTTAGATATATAACTTTTGTTATAATTAATTTTCTCTGCTAACTCTAATTGTGTTAAATGTCTCATTTTTCTCAGTTGTCTTAACATAAATTTAAATCACCTTTTAATATATTTTTTAGTAAATTCAGATAATTATATTATGTGCATTTTTGTGGGGAAAAGTTTCCTATTAGTCGATTTTTTTGTTGGAAATTTGTGCTAAAATATAAGTAAGAAATAACTCTAGCTAGATAGAGAAAAAATAGAAAATTGTAGATTTTGATAAGCCTTGCAATTAAATTTATATAAGTGTGAGAACTTTATTTCCAAAGATGGGAGGATGATTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [66.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 51385-51741 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOQI01000013.1 Clostridioides difficile strain 5558-AH/ST67 5558_contig000013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 51385 29 96.6 37 A............................ CTTAAAGCTGTTGTAGATTTTGTAAGTAATGGATTTT 51451 29 100.0 37 ............................. GGTGCTTATATAAACTTTATCTCAGCTAAGAGGGCAA 51517 29 93.1 37 ...............T.......A..... ATTGCAATAACTGGGAAAGATATAGCAGAAGCATTAA 51583 29 100.0 36 ............................. ACTAGTGATTGTGTCTGAGCACCATTTAAAGTTTTA 51648 29 100.0 36 ............................. AAAAGAGCTGCAACAGCTATGAGAAAATATGGAATA 51713 29 89.7 0 A......................A....T | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 96.6 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : GAAGCTAAGAAAAAAGAGGAAATAGAGAAAAAATCCTCAGAGGAGAACAAAGGAAACATGGAAACGAAAAAACAAACATTAACTGGTGAAGAATTAAAGAAAAAAGTTGATTCTATAATTCCAGCAGAGTATAAAGGAAATTACTACACAAATGATGTACTAGATACAGATGGTAGCTATGTACTTAGTTTACAAGTTCAAAATGCAAGTTTTGACAACGAAAGTAGTTGTAAGGCATTTACTAAAGACTTGATTAACAAGTTAAAAGAATTCAGAATAGATTCAGCAGAAATTTATTTCGTGGGTTCAAGCGGTCAAACAACATATCAAATTAACATAGATGACTTTTTGAAAGTTCAAGATAATATTGATAGCATAGACGATATGGAGTTTTTCTCTTTTAAAGATTTTAAAAATTAGAAACAAAATAGAGACATTTGCTTAAATAGCATGTGTCTCTATTTTGTCAAATTATGTTATAATAGTACTTAAGAAATATA # Right flank : TACATTGTAGGTGGGTGGTGAAACACCACATACATTGTTTTATGTTTAAAATTAAATAGAAAAAGGAAGCACTTACTTTTTGGTATGTGCTTTTGTTTTGTCTTATATTGGAAATTTGTCTAAAGATAAATTATAATGATTATATAGATATTTATTAGGGGGATTATACTATGGGATTATTCAAAAAAAAGGAAAAAGAAAAAGGAATTTGTATGATTTGTGGTAATGAAGGAAATGCTTTAAAAACTGTAGATAATGAGTTTTTGTGTGATGAATGTTTTGAAAAATGTAGAGGCGAAATAGCTGTTCTTGGAAAAGGATTAAAAAAACTGACAAGTAAGGAAGTTATGAATGCTGTAGAGCTATGTAGAGATAGTTTTGGAAATTTTGTTAAAAACACATTAATACAAATTGTATATTTAGGAGGTCATCCTTTATTTAATAGAGAAGAGATGATTTGTCTCTTAATTAGAAGTGACAAGATAGTTGTTAAAGCTTTT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.57%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 54379-55194 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOQI01000013.1 Clostridioides difficile strain 5558-AH/ST67 5558_contig000013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 54379 29 79.3 36 GAG..........A.T............T GGAGTAAACATAAATACTTTTGGTCATGGTTACACA 54444 29 96.6 36 G............................ TTCATTGTTGGCACTATATGAGTACCATTTTTACTA 54509 29 100.0 37 ............................. ACTAAAACATATTTAGTACTACCTTTTTTCTTAACTC 54575 29 96.6 37 ...............T............. TCTTCAACTTCTTGTGCAACTTTTTTAGCTGCTTCTA 54641 29 96.6 37 ...............T............. GTTTTTATTGAAGTTTTTACTGTATTAGAATAAGCTA 54707 29 93.1 36 G..............T............. AAAAATACAATAAAAATATCTATAAATATGTTATTA 54772 29 89.7 37 G..............T............T TTAAATGATGCAGCAAAAGGTGCAAAAGACACAGCAG 54838 29 100.0 36 ............................. GCTGGAATTAATGCGACTACAGTAGAAGAAAAGAAA 54903 29 100.0 37 ............................. TTGTAAACATATAAGTTGCCTTGAATCATATAAGCAT 54969 29 100.0 37 ............................. GTCGCAACAAAAGCATGATAAGATTTGTTTCCACCAA 55035 29 86.2 37 ................A...C......GT CAGCATTCTAAGTGGGTGGTAAAACACCATATACCTC 55101 29 89.7 37 G............A.T............. TTTATAAATTTATCTATAAAGGTTCGAAATACCTTAC 55167 28 79.3 0 G..............T....-..TC...A | ========== ====== ====== ====== ============================= ===================================== ================== 13 29 92.9 37 ATTTTATATTAACTAAGTGGTATGTAAAG # Left flank : CTCAGATGGCTGTTTGTGAAATCATTAAAAAGATAAAATTAGAAGAAAATGAAGTTAAGGAAATTTGGGAGACAAATGGTTCTTGGACTGGTACTGTAAATAAGTATACACAAAGTGTAATAGATAAGGTTAAGTGCTGGATAGATGATAATAATAAGCCTGCTAAGATACAGGGTGAAAAGAAGAATTATCATGTGGTTTATAAGATTGAGTAAATTCTATTGTATTAAATAATTTATTTTAGTTTAGTCTTGAGGGGGATTAATACAATGTATGAGAATTTACTTGATATGGATAGGATAGAACTTATTAAAGAACTTGGAAGTATCTTTGAAAAAATGAGAAATGAAAATCCAGAAAGATTTTATAGATTTGTAAATTTAGTGAAAGAAGAAGTTAGGAAATCAGAAGAGAAAGAGAATAAATAACATAGATAAAGCACTTGGATATTACATAGTTTCAAGTGCTTTGTTTGGTATAAAATGGTATAATAGAAGTAA # Right flank : ATTAAATAAAGAAAAGGAAGCACTTACAAACATGTAGGTGCTTTTGTTTTGCTCAAAATTGGTCGGTTGAGTAAACTAATTAGAAAAAATTAGTAAAAACCTATTGAATTATTGGCAGACATCAATTATAATAATAAGTGTCAGCCAATAATCATACAGGAGGTGATTACTATAACTAAAAATAAGGTTGGCAGACCTAAAATGGAAACTGCTATGAATAAAAGAATTACAGTTAGATTGGATAGTAAGCATGAAGAAATTTTAGAAACATATACAAAAAAATATGGTATTACTAAAAATGAAGCTGTAAGAAAAGGTATTGAGAAGTTAGAAGAGAAGGAATAAAAAATAAGGGTCACTCTCCCCGACCAAAGATTGAGTAACCCCTATTGATGTATACTACAAATATACTAATGTTAGTATACATCATTCCTTAAAAAAATTCAAACTTAAGGAGTGTAATATTATGAAAAATTTAATAGTAAAAGAGTTCAATGGAA # Questionable array : NO Score: 5.40 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : TTTTATATTAACTATGTGGTATGTAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:81.48%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [4-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 4 56995-57546 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOQI01000013.1 Clostridioides difficile strain 5558-AH/ST67 5558_contig000013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 56995 29 100.0 37 ............................. CAAAATGTCTAAAGAATTACCACCATCTTTTTCGATA 57061 29 100.0 37 ............................. TAGTCTTATTTTCAGCGCAGCCATTTACTACAAGTTT 57127 29 100.0 37 ............................. CGATATGCATCTGTATAAGTTTGATGTATTTCATCAA 57193 29 100.0 36 ............................. GTTGAATTTATGGATGATGCAATGGCAGCTCTTAGA 57258 29 100.0 36 ............................. AAAATAATTATATTCTTTTCTAACCTGTCAAGAAGC 57323 29 96.6 36 ...............A............. TTTTTTGAGGATGAAAAAGAGGAAACAAGAACAGCA 57388 29 96.6 37 ...............A............. GTTTATATGTTAAAAAGAAGTGTGGAAGAAGTCGAAA 57454 29 96.6 36 ...............A............. TCTTCTTTTGAGATAAACAGTAAAGTAATAGTAAAT 57519 28 75.9 0 AA......C...........-.CT....A | ========== ====== ====== ====== ============================= ===================================== ================== 9 29 96.2 37 GTTTTATATTAACTATGTGGTATGTAAAG # Left flank : AGATTGCAGGTGAAAAGAAGAATTATCATGTAGTATATAAAATTGAGTAAATTCTATTGTATTAAATAATTTATTTTAGTTTAGTTTTGAGGGGGATTAATACAATGTGTGAGAATTTACTTGATATGGATAGAATAGAACTTATTAAAGAACTTGAAAGTATCTTTGAAAAGATGAAAAATGAAAATCCAGAAAGATTTTATAGATTTGTAAATTTAGTGAAAGAAGAAGGTAGGAAAAAAGAAAAGAAAGAGAATAAATAATATAAATAAAGCACTTGGATATTATGTTGTTTCAAGTGCTTTATATGTTAAAAAATGGTATAATATAGGTAAGAGTTTTGCAGTGAGCGATTTTTATGTTTAAGTATGGTTTAACAATTGGAATACAAGGTATTGAGAGTATACGATAAGTGTTATCAACTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTTTATGTGTGTAAGTATTGTAAATACTCAATTTATTTTGGG # Right flank : ATTAAAAATATCAAAGAACACTTACTTAAATAGTAGGTGTTTTTTTAATTGAAAGGATGTGATGATAATGAAAAAAGTAATAAATAGGAAAAATATGTAAGAGTTATATGTTATAATATTCATGCAAGGAAAAAATGATTGAAAAAGTGTAAGAGTAGTTATTTCCATATTAAACGCCAAATTCCATAGTGGAAGGAGGTGGAGCGATATGGTAATAGATTTTTTATTAAGTGTACTAGCTGGTGTTGTATCAGCTTTTATGTATGAGAAAATAAAAAACTACTCAAACGCCAATAAGAGTAGTTTAAAAAAGTAATTAATTTTTAATCTGAATTGGAAATAACTGCTCTTGTATAAAGTAAATCATTATTTCCTTGCTTTTATTATAGCATAAATTAGAAAAAATATGCAAATAAATAAACAATGCTTATTAAATTTAATAGGCATTGTTTTTATTTTAATATTAAATAAGGAAGTGAATATATGATGAGAAAACTGCA # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAG # Alternate repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 3041-3732 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOQI01000049.1 Clostridioides difficile strain 5558-AH/ST67 5558_contig000049, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 3041 29 100.0 37 ............................. CATCAATTTTCCTCCGCACGAAAAAATCAGAAGGGGA 3107 29 100.0 37 ............................. ACTGCAGATATCGAGTTATAACTTGAAGGAACATTTA 3173 29 100.0 38 ............................. CAGACATCAACACTAAAAGCAAACGGTTTATTTACAAC 3240 29 100.0 37 ............................. TGTATATCATTAATACTAGTATCCATTTTTTGTAATA 3306 29 100.0 37 ............................. TATAAAGAGCTTGGGGTAGCAAAAGGTGTTACATATG 3372 29 100.0 38 ............................. GAAAAAATAATTATTACTGTTTCATCAAATGCAACAAG 3439 29 100.0 36 ............................. ACTGATGTTTGAAATGTTATATCCTGCACAACTCCT 3504 29 100.0 37 ............................. TATTATCTATAATCTGAGAAGGTGTATAGTCTAAATT 3570 29 100.0 38 ............................. TTATTTATCTTGTACATATTCTTTAGTGCAACTGCTAC 3637 29 100.0 38 ............................. CCATCTTTTGTTGCTTTACATAAATTTATATTACTTAC 3704 29 93.1 0 ........C..............A..... | ========== ====== ====== ====== ============================= ====================================== ================== 11 29 99.4 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : TAACTATAATAAAAATAGATATCTATTTTTAGATTAAAAATAATATATCATAAATAAAATAATAAGAGGTAGATACAGTTTTAAGGGAATACAAAAGTTTTTAATTAAACTATGCTTGTTCAGATAGATATTTATTTAAGAAAAAAGACTATTAAAAGCAATATACAAGAATGATATATTAGATTGATTAAACAAGCATAAATATTATGTAAAAAACTTTAAGTTATAGAATTTAAATCCAATGTAGATAGATTACGTTTTTTCTTGCTTTTATTATGGTATAAATTGGTATCAATATTCAAAAGTAATATATTTATGATATAATAAAATTATAGAAATTTTGCAGTGATCGATATTTGTGATAAAATTTGGCGTAACAGTTGAAATATAAGGTGTTGAGAGTGCATGATAAGCGTTATCAATTGCACTATTGCTCGTTCACTGCAAATTTAAGAGAGTTGTATACGTGTAAGTATTGAAAATACTAAGTTTATTTTGGG # Right flank : TTTTTATAATTTTCTTTTAATGTGTTATCTTATGATTATCTAGTTATATTAGCATACAAAAATATAATAAAATTACACTATATTATAAAAACCAAAAGGTAGTATAGAAATCCTATTACCTTTTTATTATTAATTTTATCAGTGTTTTATTATAAATAGCTTACATAATTACACATTTTTTCTGATTAAATAATATGATGCTATTGTTATAATAGATACTAATGCTAATGATGTTATTGCAGTATCTAATCTTCTTATTAATAAACTCATTTCTATATATTCAAGTTCTATTAAATATTGATAAAATATTTCTAGTTTAACAGCTTTTTCTCTATCTATATTTCCATACTTTAACTCTAATTTATCTAAAGATTTTTTATTACAATAATTAACTTTATGTTTAATTAAATATCTTATTGTAGCACCTATTACAATTTTCACTCTAACAAGCATAAATATAATATTCCATCCAAAAGTTAAGAGGGTATATCTTTTTTTAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 5617-5064 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOQI01000055.1 Clostridioides difficile strain 5558-AH/ST67 5558_contig000055, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 5616 29 100.0 35 ............................. CCTATTGGGTTTGCTTGGAAGTTTCCTTACAACTT 5552 29 100.0 36 ............................. AGAGAAATTTTATTCAAAAGTATAACTTCATCAGTA 5487 29 100.0 37 ............................. ACAGCTCCTAGACCACTTAATTGCGTTATTAATTCTT 5421 29 100.0 38 ............................. TCATGAAATAGGAGAACAGGATTACGATAACATGGACG 5354 29 100.0 36 ............................. TATCATAATCAACTTCAAAAAGAGCAGCTCTACCTT 5289 29 100.0 37 ............................. CTATTGTAGTTGTACCTTTACCTCTCATTTTTGCTTT 5223 29 96.6 37 .................A........... CTTATACTTAGTTAGAACTATATATCGACACAAATAT 5157 29 82.8 36 .C.............CA..A...A..... TGCAATTTTTATTCGTTGTCCAATCGCTTGAAATTT 5092 29 96.6 0 ...............C............. | ========== ====== ====== ====== ============================= ====================================== ================== 9 29 97.3 37 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : CTATTATTATATATAACTGACACTTAAGTGACATTTAAGAAAAATATAATGCTTACTTACATAAAATGGAATGTTATTTAAAGAGAACTTTGATTATATTTTCAAAAGCTTTTTTATCCATATCGTTTAAAACAAGAAAATATCTATTCATAGTTATTTTTATATTAGTATGTCCTAATCTTTCAGAGATGATTTTTATATTAGTTCCAGCTAGAAGAAGAATTATTAGAATAGATAATATAGTAAGTATTTACAAATATGTAGGTGTTCTTAAATTGATAAATTATTCCATTTTAATTTTATAGTTTGAATTTTATGATATAATAAAAATATATAAATTTTGCAGTGAGCGATATTTTTGATAAAGTAGGGTTTAACAGTTGCAATGTAAGGGATTGAGGGTGTATGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTGTATGTGTGTAAGTACTGAAAATACTTAGTTTATTTTGGG # Right flank : TTGCAACAAGTATAGGTAAAATACCCCAATAATTTATACAGCATTTTCTACTTTAAAATATAATTATTTTTTATCATTTGTAGTAAATAATTACCAGATAACATTGACTTTAGTTTTAATGATTAAAATATAAAAGTAGAATAATTATAAAAAGTATTGAAAAGTTTATAAATATATATAATAAAACTTAATGACAAGATATTAGATATAAAAAATAATTATCTTATAAATAGATTGAAATTTATGAATATTCATACTATAATTTAAATATAAAGAGATGTCCTTTAAAAATAAAAATTAAAAAATATTTAATGCTACTACAATAGGAACTAGAACTGCACTTAATAAATATACAGAAATTAGATTTGGCTCAATATAAAATACAAATATAGAATTTAGGTGTTTTTTATGAAAAAAATTTTATATGCTTTATATAGTTTCATTGTTATTATAGCTAATTTTAGATTAAAAGAAAAAAATTATAACTTTATTTTATTAGC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 86539-84532 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOQI01000006.1 Clostridioides difficile strain 5558-AH/ST67 5558_contig000006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 86538 29 100.0 38 ............................. AAGTAGTGATGACTCATTTCTTGCTAAAGAAACTATAC 86471 29 100.0 37 ............................. CTATCTGAAGAATTTAACTTTGTTAAAAAACACCCTT 86405 29 100.0 36 ............................. GTTTTAGAAGAATCTAAATTATCAGATTTAGACAAC 86340 29 100.0 37 ............................. AGTTTAGAAGGAAACTTCTTTAAAGGTGTAGAGACTA 86274 29 100.0 37 ............................. CCTAGTTCTTTATTTGTTATTAAAAGTAATTGATTTT 86208 29 100.0 36 ............................. TATTTATACCTACTTAGTTTTAGCAGCTGACGCTTT 86143 29 100.0 39 ............................. ATTATTATCGTCCAACATCATATTTAAAAAATTTTGAAG 86075 29 100.0 40 ............................. TGGTAGGAATAAGCGTTAGTTTGGCGACTGGGTACTTATT 86006 29 100.0 37 ............................. AAAAAAGAAGATAGGGACATGTATAAAAAGACAGTAG 85940 29 100.0 38 ............................. GTCTTAATAACTCTTTTCTTATAGAGTTTTTTAAATTA 85873 29 100.0 37 ............................. ACAGGCAAAGAAGGATTTTCAACTTTAGGAACTGTAA 85807 29 100.0 37 ............................. TATAAATAAATAAACAAAAAACAAAAACAATTATTTT 85741 29 100.0 36 ............................. ATAATTAACAGCACAAAAAGTAGAAATCGGAAGTAA 85676 29 100.0 37 ............................. CAACCAAGCAGTCGCAGAGTTTTCTTTCATATTAAAA 85610 29 100.0 38 ............................. AAGTCACACAACCCCCAAGCATTTAAAATTAGTTTAAG 85543 29 100.0 36 ............................. GTATATGTAATTTTTATAACTGATGGAGATAATTTT 85478 29 100.0 36 ............................. CGAAAATGGACTGTTTTATCTTTAGGAGTAGGTGAA 85413 29 100.0 36 ............................. AAGTAGATAAAATAAGTTTAATAGGAATAAGCCAAG 85348 29 100.0 35 ............................. ATTGCAAGTTTATTGTCATTAAATACTTGTTTCGC 85284 29 100.0 37 ............................. AAAAAGGGTTGCACAAAAAATGGGTTGCAAGAGTTGG 85218 29 100.0 37 ............................. TTAATAGGCAAATCATAAGGAGGATTATTCTCTCCAA 85152 29 100.0 37 ............................. GAAGATATTTCTGTAAAAATCAATAAAAGATTAAAAG 85086 29 100.0 38 ............................. AGATATTGTTTAAATTCTCTGACTAGGAAAATTGATGG 85019 29 100.0 38 ............................. GAGGAATATCTTTAACAGTAATCAAATTTTTAACCCTA 84952 29 100.0 37 ............................. GCGATTAATTGGTCAATCTTAATATTTTGTTTCTCAT 84886 29 100.0 39 ............................. AAGACTGTCTTAAATAAAAAGAAAACAGAGCCACAACAG 84818 29 100.0 34 ............................. GTTCATCACTAGCAAAATCAGCTACTACTCTACC 84755 29 100.0 37 ............................. AGGATAAAGAAAAGACTCACACAAGACACAGTGTCAG 84689 29 86.2 36 .........C............GA...G. AGAATATTAGCAATATCAACGAGTATTTAGAAACTT 84624 29 79.3 35 ............TA...CA....A....A TTGTAGAATAAACAATAGCATATACTAAAACATCC 84560 29 75.9 0 ACC.............A.CA...C..... | ========== ====== ====== ====== ============================= ======================================== ================== 31 29 98.1 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : CATTTTATAAATGATGAAAGGTACAAAGTTTTAAAGGTGTGGTGGTAAGTATGTTTGTTATTGTTACTTATGATATTGTTGAAGCAAGGTCGTTAAATAGAATTAGAAGGATACTTAGAAAATATTTGACTTGGACGCAAAATTCTGTTTTTGAAGGCAATATTACTGATGGAAAGTTACATAAATGTATTTCTGAAATAGAAAATATTATTGATAATAGCGAGGATTCAATCTATGTTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGTTATGGGATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGATATTTATGCTAAAATAGGTGTTAACAGTTGGAATATAAGGGATTGAAGGTGTATGATAACTGTTATCAATTGCACTACTGCTCGCTCACTGCAAATTTTGATGTTTTTATTGAATTATAATTGCTTGATTGAAGTATTTTCAATGTATTCAATTATACCTATTTTGGG # Right flank : AAAATACACTTACCTATAAACATTATAAAATCAATACAAAAATGAGGTGAAACAAAATTTATGATAAAGAAATTAAACAATAAAGACATAAATAAAATCATGGAAATATGGGAAAAAAGTACAATCAAAGCACATGACTTTATAAGTAAAGAATACTGGCAAAATAACTATAATACTGTTAAAAACGAATATATACCTATATCAGATACATTTGTATATGATGATAGAGATGAAATAAAAGGATTTATAAGCATAATAGATAAAAGCTTTATAGGAGCTTTATTTATAAAACCCAAATACCAAAATCTAGGTATCGGAGGTAAACTTTTAGATTATGCAACTAAAAAATATAAAAGTCTAAGTTTAGCAGTATATAAAGATAATAAAAAAGCAGTTGTGTTTTATAATAAAAAAGGTTTTAATATAGTAAAAGAACAAGTAAATGAAGATTCAGGATTTAAAGAGTACATAATGGAATATAGTAAATAATATGATTACAT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 458-950 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOQI01000008.1 Clostridioides difficile strain 5558-AH/ST67 5558_contig000008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 458 29 96.6 38 ................T............ AAGAATGTCTAAAGAATTACCACCATCCTTCTCGATAT 525 29 100.0 37 ............................. GACACAAAATCTTTATGTTGTAGGCGGTGGAGCATGT 591 29 100.0 36 ............................. GGTCCAAATACTTTTGATTGCAGTGGGTTCACTCAA 656 29 100.0 38 ............................. ATGTCAGTCACTAAAGTAAAATATTGTTGTTCTGCCAA 723 29 100.0 38 ............................. AAAGAAATTATGACTAGCTTTAGCTTTGAAACATACGA 790 29 100.0 37 ............................. GTAAAAAGAGAATGCAAATCCCAAGGCAAACTAAAAG 856 29 100.0 37 ............................. GATAGAATCGGAGAATGGCTGTCTAATACATCAAAAA 922 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 8 29 99.6 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : AGTTAATATTTATTGTTTGTATAAAATATTTGGTAAAAATAAGTAAGTTTTATATGTTATAATAATTGTAGCAAGAATAATAATCTAAAGTGGCAAGCATGTCAGCTGGTGTTATATCAGTTTATATTTATGATAAAATAAAAATCTCCCAAACGCCAATAAGGATGATTTAAAAAAATAATATTTTCACTTAAAAATAATCACTCTTTATAGGAGTAAATTATTTTCTTGATTTTATTGTACTACAAATTGGTACAGATATTTAAAAATAATATATTCATAATATTATAAATAGTTTTGCAGTGAGCGATATTTTTGATAAAATAGGGCTTAACAGTTGAAACATAAGGCATTGAGGGTATATGATAAATATTATCATTTGCACTATTCGTGGTTCACTGCAAATTTGAGAGAATTGTATAGATGTAAGTGTTGGAAATACTCAATTTATTTTAGGG # Right flank : GACAGATCTAATATCAAAATAAGGTTATGACTTTTAAAAGCATAGCCATATCAATAAAAATTTAATTATCATTTAAAAAATAAATTTTTATTTAAAGAATACACATAAATATTTCCAGACTTAACTCTCTTAAACCATTTTCATATCCTTTAGTAGATACTTTTGTTATTTTTTAATCTTTAGTAACTTATTCTTGAGTGAATCTCTTATTTTTTCTAAGCTATTTCAAGCTTCTCAAAAAATTCTATATTTATATTCATCACATATATAATACAATTAATTCAGTTTTAATTGCCAATATTTAGTTTTTCTGTATCTGATAAACCAAGAATATAATCAGTATATAAACCAAAAATTTTAGCAAATATTATTAACCCATCGTCTCTTGTTGGTCTTTCACCAGACTCTATTCTATTCATAACACTTGTATTTATATTTGTTTTTTCAAGCAATTCTTTTTGAGAACTATTCATATTTTCCCTAGTATATTTAATTCTTTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 18741-19763 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOQI01000063.1 Clostridioides difficile strain 5558-AH/ST67 5558_contig000063, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 18741 29 100.0 37 ............................. ATGATAGAAGGTGAAACAGACCCGGATACCATATTGG 18807 29 100.0 37 ............................. TAAGCAAAAAAAGGAAGAACAATATCTCGAAAAAGTA 18873 29 100.0 37 ............................. TCATATTTTAAACTGTTGTCTTGTTTAATATATGGTA 18939 29 100.0 38 ............................. AAAAAATTTACTAATTCAGTATAATATTTATTATCTGA 19006 29 100.0 40 ............................. TAGATGCTATTTCTCTATTTTCGTGTCTATATGATGCAAT 19075 29 100.0 36 ............................. CTGATAGAATTTATGACTTTGAAAGAGGCAAATTTG 19140 29 100.0 38 ............................. ATTGAAAAAACTGGCTTTCAGCTTGAAATTTTGTGAAC 19207 29 100.0 38 ............................. ACAGCTTCCTTGGTATTATCTGATATACTTTTTCCAAA 19274 29 100.0 37 ............................. TTGATTTCGTATTTACCTGCATTTGAAAAAGGATATT 19340 29 100.0 38 ............................. TCATTTGTATTCCAAAGATGTACAAGTCCAGCTACTAG 19407 29 100.0 37 ............................. TTATTAATTTTTCCGCTTCCGCTTGAAGTTTTGACTC 19473 29 100.0 37 ............................. TCTTTATCAATAGAGATTCCGTTATCTGAATTATATC 19539 29 100.0 35 ............................. ACGTGTAGAGTAGACAATACAGGTTTTTGGGTAGA 19603 29 100.0 36 ............................. TCTAGTTTTTTCTCTTTAGAAAAAATAAAAACAACT 19668 29 96.6 38 ............................T TAAAATTGTGTTTTCTCTTTCATACACCCACTTCATTA 19735 29 89.7 0 ...................T...A....T | ========== ====== ====== ====== ============================= ======================================== ================== 16 29 99.1 37 GTTTTATATTAACTATATGGAATGTAAAG # Left flank : CCTTGAGATTGTAAAGTAACAAAGTGAAAATGTAGAAAGAGAAAAAGAAATGGAAGGAAGAAAAGTATATAGATAAAGAGATATAACACGTATTTTGATTTAACTGTATAAGATGAAAAATTTGATGATTTTGAATAGTTTAAAAAATTGTTAATGAAAATAAAAGACTTGTTGAGCTAAAGTGCGATTACATAGGAAGGATGCAATAAAAAGAAAAAGGAATCATTGGAATAGAGAATATAATAAATACTTATAAGAATGTAGATGCTTTTAGTTTGTAAAATTATCCCATTTTTATTTTATAGTATGAGTTTTATGATATAATAAAAATATAAAAGTTTTGCAGTGAGCGATTTTTGTGATAAAGTAGGGTTTAATAGTTGAAATATAAAGCGTTGAGAGTGTATGATAACTGTTATCAATTGCACTATTGCTCGCTCACTGCAAGTTTAGGAGAATTGTATATGTATAAGTATTGGAAATACTTAATTTATTTTGGG # Right flank : GTTTTTTCTTATTAAATAAAGATTGAGTCACTTTATATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //