Array 1 2126977-2128442 **** Predicted by CRISPRDetect 2.4 *** >NC_005126.1 Photorhabdus laumondii subsp. laumondii TTO1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2126977 28 100.0 32 ............................ ACAAGTAACTATTTTCGTTACCGTAACCTTCT 2127037 28 100.0 32 ............................ ATCAAGTAGTGCTTACAAAGGAGAAGAATGTA 2127097 28 100.0 32 ............................ CGCATACCAAGCATCGAATCCCCGTTTAGATA 2127157 28 100.0 32 ............................ TAAACGATAACCCCATGCTTCTAATGATTGAG 2127217 28 100.0 32 ............................ TTTCCGCTGTACGTTGTACTGCACTATTTAAT 2127277 28 100.0 32 ............................ ATCAAAGCACAGCAACGAACAGGCAAGGAAAG 2127337 28 92.9 32 CC.......................... TGATACGTCCACAGGTAGCTATTTTCGTTACC 2127397 28 100.0 32 ............................ AAGGGAGTGGACCAAAGGGTAAACCTCAGTTA 2127457 28 100.0 32 ............................ AATCAAACTCCAGTCAGTATCGCTATCCGTAC 2127517 28 100.0 32 ............................ GTAAACAAACGAAGTATCGGTCTGCCGCTCTT 2127577 28 100.0 32 ............................ AGACGTGCTCCTTGGGTCCTCTCATTAAGTGT 2127637 28 100.0 32 ............................ TGCATCCATCAACATTAAGCCCGTTGACGATT 2127697 28 100.0 30 ............................ GGTAGCGCCCGATCCCTGATTCAGCTTTAA 2127755 28 100.0 32 ............................ TTACATAGGCGGCGAGTTCTGCACTGATAGAA 2127815 28 100.0 32 ............................ GAGATGAATGACATTGCGCTTCAATGGCAAAC 2127875 28 100.0 32 ............................ TAACACATCAGCAAGCTGTTGCTGTGGCAAGT 2127935 28 100.0 32 ............................ ACACGTCAGTTCGATAATAAAATCCAGGTCAT 2127995 28 100.0 32 ............................ AAAATGAGAGTAAGACGATTAGATAGCGATCA 2128055 28 100.0 32 ............................ TTTCTCTGTATCAATAACCGCTGTTGTGCCGC 2128115 28 100.0 32 ............................ AATGAAATTAATCGTTTCTCTTACAATATTTC 2128175 28 100.0 32 ............................ TACTATGTTGGGATATGCTGCATTATCTAGAA 2128235 28 100.0 32 ............................ TCTTGGCCCACATGCGCCACAACGTGGGATGG 2128295 28 100.0 32 ............................ AGTATGCACCTTGCGGAAAGCGACAAAGTGGT 2128355 28 100.0 32 ............................ AAATCCCCGGTCGCTATCAGTAATTGCATCAG 2128415 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================ ================== 25 28 99.6 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAGGAAGCAGGTCTGGATGTTGTGATGGATCGCTGCCCAAAAATTGAAATTCCAAGATTGGGACTCGAAAAATAATATTTTTCAGCTTGTAGTTATTTGGTTTCTAATTAGTGGATGAAGGGACCCTGGCACCAATATCTAATGTAAACTTAAGGCGTTGGATGAGAAGCGGTGTCCGGGTTCCAAGTGTTCAAAATAATGTTTGAGTTGGATATTGAGTTTACTTTTCTAGACATCTTATAAAATCTATTTTTACAGTTATTACAATATCTTAAGGAAAATTTAGTTGCTCTTATTGCTGCTAAATTTTGCCAGAATCTACACTTTTATTGCTATAAGATATGGTGCTTTTGTTGTGCCCTAGTTTTGACCCTTTTTTATCATCAAAAAACAACCTATTAATTTAAAAGAAAAATAAAACATCTCCTGAAAAAAGGGTTTTTTAATTTTTTATCACTATATTCTTTAACAGTCAGCAACTTAAGGTTAATATGTAACA # Right flank : GCGCGATAACTGCCTTAGGTTGTTAGGTATAATATTGGAGGTTAATTGCGCAGTCTTGGGGCCAGTAGTTGATGGCGGATGGATTCTGCTAGCTCATCGAGAGAAGGTTGCTCTGGATGTTCATCGGATGTTTCATAGGCTAATTGTGCTTCGGCCAGATAAGTATGTACAGGTTGACCATTGTCATCTTCCATCACAACGTGATACCAGGGGGCGGAACGCAGGGTAGCATTGGATGCAATGTCATCCTCTTGGGGTTGTTCCAGCGAGTATTCCACATCAATATCCACGATGACTCCCAAATAACCCAGAAGTTTGTGACGTACTTGTTGGCCGATACCGAATTTGCTGGCGATAATCATAGTCACCTCCAAAGAAGTCTTGTATTGACATTGATATAAGGGCAGTAAGGTGAATTACAAGAGCTGTACCCGGTAGTTGAAGCCATTTTTTGTTTTAAATTGCAAATGTGGCTTCATCTATTTTCAGGTTAGCTGTAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2133410-2133557 **** Predicted by CRISPRDetect 2.4 *** >NC_005126.1 Photorhabdus laumondii subsp. laumondii TTO1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2133410 28 100.0 32 ............................ AACAACAAAACCAACATGTCCTCCACCAATAT 2133470 28 100.0 32 ............................ AAGCATCCCGATCACTTCGGTAATATGAATGA 2133530 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================ ================== 3 28 98.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAATCATTTTTTATCTGTAATGTTTATATTTGCTCTCATAATAACATGTAATATAGATTATATCTTTAATTAAGCTAATTATATTTCTGAAAATATGAATTGGATACTTGTTAAATTGGGTAATACTGAATTTTTCAATATTTAAGTACATGGTGAAATTAATGAAACTGTTGGAATATTGGATGATGTCACTATTGAAAGGGGCTGTGAGATTAAGAGGTACTGATTTTTGTCGATGACCGAATTCAGTGAATGGTTCCAGTATCATTGAACATTTTACAGGCAACAATTCTCACTTACTGCATAGATCTTAGGCTTAGAACAGATGACTTAAGTATGTGATGGTATTTTTGCTGCTACCTTATTTTTACCCTTTTTTTGAAGGGAGTTGTAATTTATTGATTTTATGGATAAATTAATTATCTCTTATAAAAAGGGTTTTTCACTTTTTAGTAGTTATGCTATTTAAAAATCAGCAGGTTAAAGTTAATATGTAACA # Right flank : GCGGCAATGGCTGGAGAAGATGAACAGGAGTTTCGCCAACGCTGTATTAGTGGATTTCAAAAAGCTGATGCTTTAGACACCATGATTGAGGCACTACAAACAACTGCGCAACAATTGAGTCAGGTGGCACGATGAATATTCTCTTAGTTTCCCAGTGTAATAAACGAGCGCTAACAGAAACCCGCCGAATTTTGGATCAATTTGCTGAACGTAAAGGTGATAGAACTTGGCAAACGGCTATCACCCAGGAAGGTTTAAATACTTTGCGTAAGTTATTGCGTAAAACGGCACGTCGTAATACGGCGGTGGCTTGCCATTGGATAAAAAGTGGTGGTCAAACTGAGCTGTTATGGATAGTCGGGAATTTGCGGCGCTTTAACTCACGAGGAGTTGTACCTACAAATACAACACAACGTGATGTGCTGAAAAGTCAGGATGAAAATCATTGGCATAGTGTAGAGGCTATCAGCTTATTGGCAGCGATTGCCGGGTTATTTCAT # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 2142057-2143464 **** Predicted by CRISPRDetect 2.4 *** >NC_005126.1 Photorhabdus laumondii subsp. laumondii TTO1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2142057 28 100.0 32 ............................ CAAGGGCACGATTTCCCTTTGGTTTTATATGC 2142117 28 100.0 32 ............................ GATGTGCGGAACAATTCAGTCTGCAAATACGT 2142177 28 100.0 32 ............................ AATCGAAGAGCTTCATCCTTGTGAGTTTCTTC 2142237 28 100.0 32 ............................ TGTCCAAAGAGTGAAGCCGGTTCCTCCTCCCG 2142297 28 100.0 32 ............................ GGCTGATGAGACAGTCCGATAATAGAACCCAC 2142357 28 100.0 32 ............................ TGGAATGCGACTTCATCACCATTTTCAATCAT 2142417 28 100.0 32 ............................ TTTACCGAAATCTTTTAGAGCGCTAGTTGTTT 2142477 28 100.0 32 ............................ AACATTTAAAACATTATTTATTGTTACTGTTC 2142537 28 100.0 32 ............................ ATTTACGTAATGACCAATGACGATGGACATGA 2142597 28 100.0 32 ............................ TCGTCGATTTGAACGCGACTCAAGCTGCAATT 2142657 28 100.0 32 ............................ ATACCGGATTGTTAGTAAAACCTATCCACTTT 2142717 28 100.0 32 ............................ CATAAGCGGGACTAACCCGCCATTAATCAAGA 2142777 28 100.0 32 ............................ TGTTGAGCAGATGCCAACTCGGGTAGTGTCCA 2142837 28 100.0 32 ............................ GGTCTCGATGTGCTGGTGGGTATCCCGGCTGA 2142897 28 100.0 32 ............................ TCACGTCATTTGTACCAATTTACTGACAACAG 2142957 28 100.0 32 ............................ ATTAGCGCAGATAACCCCAACTCGGAAGCTCT 2143017 28 100.0 32 ............................ TCCTATTTTTAAATAAATCATACACCTATGCA 2143077 28 100.0 32 ............................ GTTGATAGCTGGCGAGATAGCAGCGGTAAGCT 2143137 28 100.0 32 ............................ TGTCGTGTTTCATGTAGTAATCTATTGCAACT 2143197 28 100.0 32 ............................ ATCAGGAGTACGCAAGAGCCGGACACAGATAA 2143257 28 100.0 32 ............................ ACCTATGTGTTCTGCCGACTCTTTAACGTCCA 2143317 28 100.0 32 ............................ AATTAGCGAACAACGTAACATTGTTGATTCTG 2143377 28 96.4 32 ...........C................ ATTACGCAAGCTGTCACTAATGTTGCGTGCCC 2143437 28 82.1 0 .....................AGC.C.C | ========== ====== ====== ====== ============================ ================================ ================== 24 28 99.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAGCGCTGAATGACTTACAAGCATTACCGTGGTTAAAAGGGCTCAGGGATTATACTGAGGTGATTGATATCCAGCCAATTCCCCAAGAAACTAAGTACCGCTGTGTCAGCCGAGTGCAGGTTAAAAGCAGTGCGGAACGACTTCGTCGTCGTGCTATTAAAAAGGGATGGTTAACGGGGGAACAAGCTCGGCAGCGTATTCCTATCAGCAAAGAACAACGTACTCATTTACCGTTCTTGTTTCTCAAAAGTTTGTCATCAGGTCAAAGTTTTCTGTTGTTTGTCAAACAAGGGCCAATACAAGACAAACCGACGTCAGGAATTTTTAGCTCGTATGGATTAAGTTCATCAGCTACCATCCCTTGGTTTTGACCCTTTTTTAGCGGCTAATTATAACTTATTGATTTATTTAAGGGATTAGCCGCTGCTAATAAAAAGGGTTTTTCTGCTTTTTATCATTATGTTCTTTAATAATCAGTAAATTAAAGGTAGTATCTAACA # Right flank : CTCGATTGAGTGCGCTAAAAAAGCAACCTATTTTCTTCTCGATATGCATCAATTGTTATGCTTTTGTGCATATTCTCCACTATTAACCCATTGATGGTCTTTTTCCCAGGTAAATAGCCACTTGCGGGTTGGTCCGGCCATTACGTTGAGATAATAGTTGTCGTAACCGGCAAGGGTTGCTACTGGGTGGTAGCCTTTGGGGACCATGACCACATCCTTGTTGTAAATAGCCATTGATTCATCCAGTGAACGGTCATCGGTATAGACCCGTTGCATGCAGAATCCTTGAGAAGGGTTCAGGCGATGGTAATAGGTTTCTTCCAAATAGGTTTCCTGTGGCGCATTGTCGGTATCGTGTTTATGGCTAGGGTAGGAACTGGTACAGCCTTCGTCGGTAAAGACTTCAACCACCAACAAGCTATCAGCAGGTTTGTTATCCGGTAGAATGTTGTGAACATAGCGTCGGTTGTAGCCATTGCCACGTTGTTCTGCATCAATAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 2392119-2392266 **** Predicted by CRISPRDetect 2.4 *** >NC_005126.1 Photorhabdus laumondii subsp. laumondii TTO1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2392119 28 100.0 32 ............................ ATACAACTAACATAGCGAGATAATCATGACAG 2392179 28 100.0 32 ............................ ACCTTTTAGTTATGAGGGTGTGCGTTTTTATT 2392239 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 3 28 98.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TATTGATAGCGGCCGTGGAATTTTAACTCATCAAGGGGATGCCATTAGAAATATTGTAGGTTCATTTCCTGGGGCAATAGCACTTCATTTTGAGCTGGCAGCAAAAGGGGTTTTTTACGGTAACGCAACTTTTGGCGTGGCTACAGATGGTAATCCTAAATCAGTAGATCATTTTACCCGGGATGCTGTATACACTACATACGGTTTTGGGTTCGACACGTCAAGGGTTGTTCCTGTAGCTTCGGAGAACCGTCCTCGCAACATCGCCTTTAATTACATAGTAAGAGCGGCGTAATGGCTGAACAAAAATACGCTTGATAGCCGGAAATAGAAAGAGAGACGGCTTTCTACTTGGATGGAAAAAATTTTGACCCTTTTTTAACGGTAAATTTTAATCTGTTGATTTTTCAGTAAATATTGTTTATCCCACAAAAAAGGGTTTTTTATTTTTTATAATGGTTGCTCTTTAACATTCAATAGGTTGGGGTTAATATGTAACA # Right flank : AACCAACATTTTCACTTACCAATCTATTTTCAGAACTGTCGGCTCAAGTGTATCGTTGAGAACAATGAATGTGTGTTTTATGAAGATAGAGAGCCTATGACATTCCAGAACACCGTCGCTTAGATATTCGTGTCCAAATGCCAGAAGATTCATCTTGGAATTTAAAATAGCAGGCGTTACAGGAAGAGATAGAAGGAATAAGAGCAGAATAGTTTTCAGATGTTAAATATAAATGGTTTGGGTATGTTTTCGATTCTAAAATATTTAATTACTTATTACTGCTAATTATATAAAAATAGTCAATCTCCTAATAAATAGGAATGCTGTATTACTCTTCTTTCTGAACTAGACTTTGATTTTAATGAATTACAGACGGATTATTTTTACAGTAATTAAATATGTTGATTATAAAAAATATTATTTTGCTTAAGGAGTAAGGATATGAGTCAAAAAAATGATTTTAAAGCTTTTTCTATTAGCGATAATGCTAATGTAATTAG # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 2395199-2395826 **** Predicted by CRISPRDetect 2.4 *** >NC_005126.1 Photorhabdus laumondii subsp. laumondii TTO1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2395199 28 100.0 32 ............................ ACAGCCGGAAAATTAATGGCAAAGCATTAAGT 2395259 28 100.0 32 ............................ CGTAATTTCCTGCTTATCATTACTCTTTAAAG 2395319 28 100.0 32 ............................ TACGTTTGCACTCTTCTATATAGTGAGGGTTA 2395379 28 100.0 32 ............................ CGTAATTTCCTGCTTATCATTACTCTTTAAAG 2395439 28 100.0 32 ............................ TACGTTTGCACTCTTCTATATAGTGAGGGTTA 2395499 28 100.0 32 ............................ TGATGCCGACGAACGGCAACAATGCCGGTGAT 2395559 28 100.0 32 ............................ TTTGAAAACTCCCTGAAGCAATGGCGTGACCG 2395619 28 100.0 32 ............................ AACTTCTCCCGCACACAAAGGGAGAGTGGGCG 2395679 28 100.0 32 ............................ TAGAAATCCTTGAATATAGTCAGACCCGTAAT 2395739 28 96.4 32 .C.......................... AACTTCTCCCGCACACAAAGGGAGAGTGGGCG 2395799 28 96.4 0 ....................A....... | ========== ====== ====== ====== ============================ ================================ ================== 11 28 99.3 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGACGAGGTATTGATAGTGGCCGTAGAATTTTAACGCATCAGGGGGATGCTATCCGAAATATTCAGGGTTCGTTCGCCGGCATGATAGCACTAAATTATCATTTGGCAACAAGAGGGGCTTTTTATGCTAGTCAAGTTCTTGGAATAGCGACAGATGGCAGTTTCAAATCGATAAATATTTCTGACACAGATACTCCATACGGCTTTGGGTTCGAGGCGTCAAGGGTTGTTCCTGTAGCCTCAGAGAACCGCCCTCGCAACATAGCATTTAATTACATAGTGAGAGCGGCGTAATGGCTGAACAAAAATACGCTTGATAGCTAGAAATAGAAGAAGAGACTGCTTTCTACTTGGATGGAAAAAATTTTGACCCTTTTTTAACGGCAAATTTTAATTTATTGATTTTTAAGTAAATATTGTTTATCCCACAAAAAAGGGTTTTTTATTTTTTATCATGGTTGCTCTTTAACATTCAATAGGTTGGGGTTAATATGTAACAA # Right flank : AAGAGGATTAATTGAGCGCTTTTAGTGAATATTTATTCATTGCACCACAGCGATGTTAGGAAAGCATGTTAGGAAGGGGAGGGGCCGGCATAAAAAAAGCCACCTTGCGGTGGCCTTTTCTTTTTTCTAACTCACTGTTTTATCAGCGAATTTCATTTGGTGCCCAGGGCGGGACTTGAACCCGCACAGCCTTACAGCCGAGGGATTTTAAATCCCTTGTGTCTACCGATTTCACCACCTGGGCTGAATTTGGAGGCGCGTCCCGGAGTCGAACCGAGGTTGACGGATTTGCAATCCGCTGCATGGCCACTCTGCCAACGCGCCTTTCTATATTCAACGACTAATTCAGCATCCAACTTCTGAACAGTAAGTTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCAACCTTGGCAAGGTTGTGCTCTACCAACTGAGCTATTCCCGCACCGCTTTGAACTAGCTGATTTACTTATTTGTTTTCGTAAATCTCATGTGCC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 6 2475403-2475730 **** Predicted by CRISPRDetect 2.4 *** >NC_005126.1 Photorhabdus laumondii subsp. laumondii TTO1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2475403 28 100.0 32 ............................ TGTAAGAACGATACCAAAGACAAGTATTCCCA 2475463 28 100.0 32 ............................ TTGTTTATTCTTAAGAACAACGTAGTAGCTGG 2475523 28 100.0 32 ............................ TATTAAAGGGGATCAAAATGAATACATCAACA 2475583 28 100.0 32 ............................ CTTTTGAAGGGCTAAGTGTTGCCGGGCCGATA 2475643 28 100.0 32 ............................ GCAAGTAAACCCGGTGGCTATAATCTCATCTC 2475703 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGTTATTTGGGATATTCGCTTGGTGAAAAGTGGCAGGGAAAAGGGATGATGTACGAAGCTTTACAACCAGCTATCCGTTATATGCAACGCCAACAGGGGATGCATCGGATTATGGCTAATTATATGCCGGATAATCATCGTAGTGGGAAGTTGTTGGAACGATTGGGTTTTGAACGTGAAGGCTATGCTAAGAAATACCTGATGATTAATGGAGTTTGGCAGGATCACGTATTAACCGCATTGACAGATGAAAAATGGAGTGGAAAAAGTTGATTATTACGCTGTACTGTCACCAAATAAAGTAAAGCAAATTGGTAATGATGAATTAAATCACTGTTGAAAATCTGCCTTCTCCACCCCTTATTTTTGACCCTTTTTTGAGAGTGGATTTTAATCTATTGATTTTTAATGGGATATTATTTCTCTTGTAAAAAAGGGTTTTTTCATTGTTTTATCAATATATGCTTTAATTGTCAGTAGCTTAAAGTTAATATGTAACA # Right flank : ATGAGTAAGCTTCAATGAGTTGATTTATTTGACGCACTGACTTCGGTTGGTGCGTTTTTCGAAGTGGCTATTTGGGCTTTCTGTAGTAAGGCTAGTTGCAAGGTACCATCATTTAGGCCAAATACAATGTTACATTGGCAAATTATAAAAGTTAATGATTTCTAGTGTATGAGAATGAATTTATGCATACTCGCCGATTTTGTTAACAAAGTGAATGATTAACCATGGTAGATTCATATAATAAGTACAATATCGCTACTCTGTAAATAAATATTTCCGAGTAATTCATTTATCATGAAAATAATTTTAATGGTTTCTTAGTTACATAAAAATAGGTGTTATTCTAATTGGTTTATTTAATAAGTGCTGAAATTCCGTTTCATAATTATTTGATAAATGCTAACTTTGATTTTATATTTTTGGGATAATAGTAATTGAATAGAAAAAATAGATAAATAAAGAGTGAGTGAAAATAAATATTCATATAACTTGAGTTCGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //