Array 1 33560-34547 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTNV01000008.1 Pseudomonas aeruginosa strain AZPAE15025 AZPAE15025_contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 33560 28 100.0 32 ............................ ATGGAGGACGGCGCGATCATCTGCTGGCCGGA 33620 28 100.0 32 ............................ CGGTCCTGCCAGTACTGCGGCAGGATCTGGTC 33680 28 100.0 32 ............................ AGCCTGGCGCCCTTCGAGTCCATCCAGCCCGG 33740 28 100.0 32 ............................ CATCCAATTCGCCGATCCGGCGCAAGCGCCCG 33800 28 100.0 32 ............................ ACGAAGCAGATCGCCGAATGCGGCGTCAGCGC 33860 28 100.0 32 ............................ GTGGGTGCAAATCGCGATTCTGGTCGCGTCGT 33920 28 100.0 32 ............................ TGAATATCAGCCTGCAAAGCGTCGTCGTAGTA 33980 28 100.0 32 ............................ AAGCCGGGCCGATGTTCGAGCCTGGCTGCGTG 34040 28 100.0 32 ............................ TGGACAATGCGCAGCCCAGGCGCTGGATTTAC 34100 28 100.0 32 ............................ ATGCGAGGCTGATCGAGGTGCGCGGTTCTGTT 34160 28 100.0 32 ............................ GTGCGCGGATGGCTGGTATCTCGAGCACGATT 34220 28 100.0 32 ............................ AAGGTGACGATGCACAGCTGTTGCGCGCGGTT 34280 28 100.0 32 ............................ ATCCTCGAACAGCCCGGGTTCGGTCGCCTCCA 34340 28 100.0 32 ............................ AGGAGTTTGCGGCCCCGCTCCCTGCGGCTCTC 34400 28 100.0 32 ............................ TTCACGGCGGGCTTGATGTCCGCGTCTACCTG 34460 28 100.0 32 ............................ TTGCCGAGTACGATGCCTGATACATGAATCCA 34520 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 17 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCAAAAGACCTTTCGCGCCCGAACGGCACGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCTCGCTTGGAAGCTCACGCTCCTCACACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 43945-43071 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTNV01000008.1 Pseudomonas aeruginosa strain AZPAE15025 AZPAE15025_contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 43944 28 100.0 32 ............................ GCCTGCGCGTTGTTCGCCCGCGCCTTCAACGA 43884 28 100.0 32 ............................ ATCACCGGCGCGCTGGCCTTCGGCGCCCAGGC 43824 28 100.0 32 ............................ TTATCAGTAAATACGTGGCGACTTGGCCACCC 43764 28 100.0 32 ............................ TTGCTGCGTGTTGCAGCGACACCCGTTCAACA 43704 28 100.0 32 ............................ ACTGGAGATACGTGCACAGATCGGACGACACG 43644 28 100.0 32 ............................ ATATCAGTTTGCATGGTTTGCTCCTACCAAGC 43584 28 100.0 32 ............................ TTGCATCGCACCCTCCTGCTCACCGACCAGGC 43524 28 100.0 32 ............................ TGAACGTTCACGCATCACGCGCCTTTCCGGCC 43464 28 100.0 32 ............................ AGGCAGACGAGTACGCGCGGTCTCGCGAAGTG 43404 28 100.0 32 ............................ AGAACATGGCCCGGCTCCCGACGTTGCTGCGG 43344 28 100.0 32 ............................ ATGACGCAAGACGAGCTTGTCCGCCTTCTGGC 43284 28 100.0 32 ............................ GTTTGCAGGAAGCGGCGCTATCGCACCGAACT 43224 28 100.0 32 ............................ ATAGCTACGCCGAGCCAGTTGTAAGCTGACGC 43164 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA ACGGAT [43140] 43098 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 15 28 98.1 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAACACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGGTCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGGGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCACCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //