Array 1 107959-106116 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRZO01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain G247 NODE_1_length_442680_cov_98.185376, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107958 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 107897 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 107836 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 107775 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 107714 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 107653 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 107592 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 107530 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107469 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 107408 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 107347 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107286 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107225 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107164 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107103 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107042 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 106981 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 106920 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 106859 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 106797 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106694 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106633 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106572 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106511 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 106450 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 106389 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106328 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106267 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106206 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106145 29 96.6 0 A............................ | A [106118] ========== ====== ====== ====== ============================= ========================================================================== ================== 30 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125583-124090 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRZO01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain G247 NODE_1_length_442680_cov_98.185376, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125582 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 125521 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 125460 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 125399 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 125338 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 125277 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 125216 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 125155 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 125094 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 125033 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124972 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124911 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 124850 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 124789 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 124728 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 124667 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 124605 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 124544 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 124483 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 124422 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 124361 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 124300 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124239 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 124178 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 124117 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //