Array 1 38-214 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPMY01000079.1 Candidatus Accumulibacter phosphatis strain SBR_S PAO7_binned_c79, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 38 36 100.0 34 .................................... CACAGACTTTATACCACCATGCAAAAGTAGCTTG 108 36 100.0 35 .................................... AGCCCTTCATTGACGACTGTACAGCACTCGTCAAG 179 36 91.7 0 .................................CGG | ========== ====== ====== ====== ==================================== =================================== ================== 3 36 97.2 35 GTCAGTAACCAGCCCTGAAATCAAAGGGATTGAGAC # Left flank : CGGTCACCCAGCGCGGCAAGCTTTCTTTGGCGCGGGCG # Right flank : GACGATTGCCGCCGCTGCATTTTTCCGCCTGTATCGATCAGTGATTTTCGGCAAGCTTGCCGGACCTGACAGGAGTGCCACGGAGGCCTATCGTGGCGACATGAACGATGTGGCGCGAACGCTGTACCTGGTCTGCTACGACATCTGCGAGCCGAAGCGGCTGCGGCGGGTGCACCGGTATTTGATGGGCTACAAGGTCGGTGGTCAAAAATCGTTCTTCGAGTGCTGGCTGACCGCGGCTGAACTTCGTGAAGTGCGCAACACGCTGGCCGAATTGCTCGCTTTAAGTGAAGACCGGGCACACATCTTCCAGCTCGATCCGCGCATGCGGCGCGACATGTTGGGCCGGGCGACGCAGCCGGTGACGGATGTTTTTCTGATCGTTTGAGGGGGGAGAAACGATGACCAGTCTGTATGTTGACCGGCGCTGCGTGACGCTGAAGGCGGACGGCGAGGCGCTGGTGTTCTACGAGAACGGCGAGCGCATCGGCACGGTACCG # Questionable array : NO Score: 5.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGTAACCAGCCCTGAAATCAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 134753-134573 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPMY01000005.1 Candidatus Accumulibacter phosphatis strain SBR_S PAO7_binned_c5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 134752 37 97.3 34 ....G................................ AGCATGTCCCGCCCTCCTTGCCGTGCGTGCCGGT 134681 37 100.0 35 ..................................... AACATTAATGTCCGCAGATTACGCAGATTTCCGCA 134609 37 91.9 0 .....A....................T..C....... | ========== ====== ====== ====== ===================================== =================================== ================== 3 37 96.4 35 GACACGCTCCCCGGCGACGGGGAGCGAGGATTGAAAC # Left flank : AAGACTAGGAGTTAGGATGCGCATGATGAAGGTGAGGATATACAAGGGTGACCACAGGTTCATGCGTCAGTACGCCCTTGACAACGACACGACGATGGGACATCTCATCCGACAAGCCATAGCAAGGGTGCTTGCTGGGGAATTTGAGGTTGTGGACAAGCATGAGTCGGTGTCGTCAAGCATCAACATCCCCGAGAGCGATGAGCAGCAATTGAAGGACATCGCCATGAGAGCGGGGGTATCTGTTGATGAGGTCGTCAGGCAGGCAGTGAATGACACACTGGGGAAGCTAAAGGCAGCCATAGAGGCAGGTGAGCACATCCTCAAGAAGGATGAGAAGACAGTGGAGACGGAGCGCGCCATCGCAGAACGGGAGCAGGCCATGGTGATGAGGCACACCGGCGTACCAAAGGAGATCAGGAAGAAATACAGGAAGATCATGAATGATGCTGACGTGGAGTAGTTCACACACAACCTCCCACCACTAACTTACTCTATGG # Right flank : TATGGATTGCCGCAATCGGCGCGAGCACATCGGCACTCAACGTCATGACCCGGACAGTCAAGCCTGACTCTCAAAGACTCAATTTCATGACTCAGAGCGTCAAAGCTGACTCTCGAAGACTCAACTTCATGGCTCGGAGAGTCGAAGCTGACTCCCAAAGACTCAACTTCATGACTCGGAGAGTCAGCTGTGAGGCGCAAAGACTGAGTCTCATCTCTCGGGCGGTCAGCTGTGAGCGCCAATTACGCAAAGTCATCACGGCGCGAGTCAGCACTGATCGGCGCAGCGTCGCCGGCAAGGCGCTGAGGCTTGCGCGCCGGCTTGCAGCAGCCGGTGCGCCCCTTGCCGAGCGGCGCAGTGTTTAGCTGACGGGTGCCTTGCTGGCTTTTCTCCGGTGACCGTAGCGTTGGGCCATCGATTCGCGCATCGCATCGAGCGCCGCGCCCTTGCCGACTGCCTTGGCCAAGGCATAACCTTCCAGCGCCGAACTTAGAATATCA # Questionable array : NO Score: 3.99 # Score Detail : 1:0, 2:0, 3:3, 4:0.82, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GACACGCTCCCCGGCGACGGGGAGCGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [3,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-16.70,-18.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : NA // Array 2 135649-135322 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPMY01000005.1 Candidatus Accumulibacter phosphatis strain SBR_S PAO7_binned_c5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 135648 37 100.0 35 ..................................... CGCTACCTCGAAAACGCATCCCGCTTCGAGATCAG 135576 37 100.0 36 ..................................... GTGCCGGTGCTGTTGCCACTGCCGGTTGGGGCGCCG 135503 37 100.0 34 ..................................... CTAGGGTGGCGGGCGCTTATGACCTTGGAGCAAG G,C [135484,135495] 135430 37 100.0 35 ..................................... GCCTGCTCATACTCGGAAAATGACACGACTCGTAT 135358 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 5 37 100.0 35 GACACGCTCCCCGGCGACGGGGAGCGAGGATTGAAAC # Left flank : A # Right flank : AAGGCGTGCGCATCGGGTGCAGGCTATACGCTTGACAGCGCACTAAGGGCAGTTGTGGTGGACCATTTGAAGACTAGGAGTTAGGATGCGCATGATGAAGGTGAGGATATACAAGGGTGACCACAGGTTCATGCGTCAGTACGCCCTTGACAACGACACGACGATGGGACATCTCATCCGACAAGCCATAGCAAGGGTGCTTGCTGGGGAATTTGAGGTTGTGGACAAGCATGAGTCGGTGTCGTCAAGCATCAACATCCCCGAGAGCGATGAGCAGCAATTGAAGGACATCGCCATGAGAGCGGGGGTATCTGTTGATGAGGTCGTCAGGCAGGCAGTGAATGACACACTGGGGAAGCTAAAGGCAGCCATAGAGGCAGGTGAGCACATCCTCAAGAAGGATGAGAAGACAGTGGAGACGGAGCGCGCCATCGCAGAACGGGAGCAGGCCATGGTGATGAGGCACACCGGCGTACCAAAGGAGATCAGGAAGAAATACA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GACACGCTCCCCGGCGACGGGGAGCGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [3,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-16.70,-18.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [40.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : NA //