Array 1 6455-3907 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOXF01000321.1 Listeria monocytogenes strain 18ZQLM13 NODE_99_length_9957_cov_42.677925, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 6454 36 100.0 30 .................................... GGCGATTCTGTTGAAACTGCAACGAAACTT 6388 36 100.0 30 .................................... CCACGTCAGACCAAGAACTTAAAACTATGC 6322 36 100.0 30 .................................... CTAAATTCATGTTGCGGGATGTTGTGGATG 6256 36 100.0 30 .................................... GAACTTCTTCACCATCCTTCATTTCTGTTT 6190 36 100.0 30 .................................... TCAGACTTCTATATCCACAATAAAAGCCCT 6124 36 100.0 30 .................................... GCGAGTCAATTCATCAAACCCAATCAGAAA 6058 36 100.0 30 .................................... GTGTACACGATAGTCCAAGTCGGTATTTCC 5992 36 100.0 31 .................................... CTCACGTTGTCAAGGTCAAATTTTAGATATG 5925 36 100.0 30 .................................... GAGGTTCGTGGGGGTAATCCCGGCTTGCGA 5859 36 100.0 30 .................................... AGAGGCAACGAGACTACAGACGCACTTAGA 5793 36 100.0 30 .................................... TTTGGTCGAATTCTTCCGCATCTTTAAACT 5727 36 100.0 30 .................................... TTAATGAAGAACTAGAAACAATTGAAAACA 5661 36 100.0 30 .................................... GCACGTATGATCGTCTTCTTTGATGACCTC 5595 36 100.0 30 .................................... TACTCGTATAAAAATCAAGAGAGACGTATT 5529 36 100.0 30 .................................... CTTCCGCGTTACATGTTTGACATCAAGTAA 5463 36 100.0 30 .................................... GGTTGTGCCGTCACCCGTTGGTGGTAGGCT 5397 36 100.0 30 .................................... TTTTCTTTTTCACGATGCGATCGAACGTTT 5331 36 100.0 30 .................................... AGTGCAATATTTAGCGTACACATCTTTTAC 5265 36 100.0 30 .................................... TTGGTCAATAGATGACTGTATTTCTTGCTC 5199 36 100.0 30 .................................... TGAAACACACAACATTTCAGAATGGCTTAG 5133 36 100.0 30 .................................... ACTTACTGAACAACATTGATTACCACAGTT 5067 36 100.0 30 .................................... TAATAAACAAGAAATATTACTTCATGAATC 5001 36 100.0 30 .................................... CACTATCCACTACAGTGATTTGTATTGTGC 4935 36 100.0 30 .................................... GTAATCCCAATTAACCCCGCAGAGGGTGTA 4869 36 100.0 30 .................................... TGTCATGGCGAAAGGTAAAACGGTCGATTG 4803 36 100.0 30 .................................... AGTGTTGGAGACTGCAAGGATTTCCGGATT 4737 36 100.0 30 .................................... AACCTGCAGGTGCTGTGTTCACGTCAGCAA 4671 36 100.0 30 .................................... TGTTGTCAAAGATGGTAATAAATGGGTGAC 4605 36 100.0 30 .................................... CATCGAATTGATACTTTTCGAGTGAAGCAA 4539 36 100.0 30 .................................... GTGGGAAACGTTAAATATTATAAAACAGAT 4473 36 100.0 30 .................................... GCATCGTACCCCAGTTCATGAAGCGCGGTA 4407 36 100.0 30 .................................... ACAAAACTCTCTAATTCAATTGCTCCATCA 4341 36 100.0 30 .................................... TTTATAAAGAATACTTGCGGGGCATAAATG 4275 36 100.0 30 .................................... GTCTAAACTTGGAATATAACTTAGGTCTTG 4209 36 100.0 30 .................................... ACTGATGAAAGTATTTCTCCAATGACAAGT 4143 36 100.0 30 .................................... TTAAATACGATGGAATTAATCTATCGATGC 4077 36 100.0 30 .................................... TCAAAGAGTTTATACCTGTTTTGATTGAGT 4011 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 3945 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [3910,3913,3918] ========== ====== ====== ====== ==================================== =============================== ================== 39 36 99.6 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //