Array 1 16522-16884 **** Predicted by CRISPRDetect 2.4 *** >NZ_SFCD01000019.1 Aeribacillus pallidus strain TD1 NODE_19_length_56106_cov_158.872402, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 16522 30 100.0 37 .............................. ACGCGACGCCCGGCGACGAAAGCGACGTGTCGAAAGC 16589 30 100.0 37 .............................. CACAAAATGATATGTTTTCCCTAAGCTATGACTATCG 16656 30 100.0 36 .............................. AAATGTTCAAGACATGTAGGTTTAGTAGGTTTATTT 16722 30 100.0 36 .............................. GTTTTGACATAATTAATAAATTGTTGGAATTGCTGG 16788 30 100.0 37 .............................. TCCCTACCGCGACCGACCGGTTTGTGTTCGATCGTCA 16855 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 100.0 37 GTTTTTATCTTAACTATAAGGAATTGAAAC # Left flank : TAATTTTAGCTTTAGAAAACAAGCATAATGTTGAGGTTCATAAGTTGAATGGACAACATGGATTCAGTGACCCATTCTCTTTAAAATATAACGAAGCATCAGCAAAAAAAGCTTTTTACCAGATGTTGTTTTTTCTTTTGGAAACATTTAGACGTATTAACTCCGATGGAAAATCGGACTAACTTCTTTATCTGTGGTGAAGATCCCTTCATGATTGACTAATTGGCAGGCTAGCTGGAGAAGGCAAGGGTTAGTTTCAAAACAATGACGATATTTTTTCTGGTATGAATTTTGAAACAAACGCAGTACATCACATCACCCAAGTGTGAAAAAAAGTCGTCGACCTCCAATCGTGTAAAAATCCCTGGAGATCGACGACAGCTGTTTTTTGAAGGAAACAGCAGAATAATGGGCCATTGCGAAAATTTTCCATGTTCGTTATAATTAAAACCAACATCCGCCATTATTTAGAAAACATACTAACATCAACGTTTTTTTGG # Right flank : CGATTTTCCAAAACGAAACACAACTGAAATTGACGACTTTTCCATTATTAAAATTCAAAACAAGGGTCCCACGAAAAGAAGGGTAAAAATTCAGCTTAACTAACCTGTTGAGTAGGTCCATTACATATTAATTTGAATACCTATGTTAAATGTATCTCTATGTTTTAGTTTGCGGTGAAATATACTTAAAGTTACGGATGCTTTAATCAAAAAGGAGTAGAGTTGTTCCACTATGGGCAGGTTAGTCGAACCGAAGAGTTCTGAACGACTTCATCGGCGACGGCTGTTAGTGAATTAAGTGGAAAAGGGGCTGTACAGATGTTTGGAATAACTGGTTACGGAATTTATTTACTTATGGCCATATTTATGAATTTAACCCCTGGCACTGACACTATGTATATTATTAGCAGAAGTATATCACAAGGCAGAAAAGCAGGTATTTACTCTGTACTTGGAATTTCAACGGGTTCTTTCATCCACACTTTATTAGCTGCTTTTGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 39-538 **** Predicted by CRISPRDetect 2.4 *** >NZ_SFCD01000043.1 Aeribacillus pallidus strain TD1 NODE_43_length_29396_cov_136.338366, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================ ================== 39 30 96.7 37 ...T.......................... TTTACTAATGCAAGCTCATTTTTGCTCATCCAAATTC 106 30 96.7 35 ...T.......................... TGTGGCACATGACGGTTTTTTGTTCTTCTGGTACG 171 30 100.0 36 .............................. GCAAAAAGAACGAATGATGATGGGTTTGATGAGTTC 237 30 100.0 36 .............................. TATAACGTTTATAATCGTTTTATACGTTAGTAACGT 303 30 100.0 39 .............................. ATGATATGACTTTCTAGATCCCCGAACCAAGTCATATCC 372 30 96.7 34 .................G............ ATGTTTTTTGGCATTCCTCAATCGCCATTTCGAC 436 30 80.0 44 C..T.............G.........GGA ATTGAAACCCTGTCTTATCAAGAAAAACAGCCACTGGAGACTTG 510 29 86.7 0 ...T.............G.......-..G. | ========== ====== ====== ====== ============================== ============================================ ================== 8 30 94.6 37 GTTCTTATCTTAACTATAAGGAATTGAAAC # Left flank : ATTAAAAATGAAATGCTTATTTAACAACATTTTTTGGGG # Right flank : CCCCTGTATCTAAGAAAATATGCTAGTCTACTAATAAGTGAAGCTATGAAAGAGCGCTAGACGAATACCAAAGGAGCGCATGAAATGACGTGTAAAGAACCTAAATTTACAAAAAGTCCTTTCTTCGTTGATGAACCGGGTAACTGGCACCTAAAGCCTGGAGCGCCGGAAGACATAGTAAAAGAGTTTAATGAATATATGGAAGCCCAAAAAATGTGTGTAGAAGCTCCGAAGTTAGACGAAGCAGAGTTAGAAAAAATCCTTTCAGAGCTAAAAAAACTTTGAACGACTCTTTTTTCTACTGGCTGCTTCCCGTACAAGTATCAATAGGGTCTTGGGGCAGTTGTGATGGAAACGCACAGAATTTCACATTCAGCGCTGTAAAGCAGCTGGTTTAATCTTAACGAAGCTTTGGCATTGTCAGGGAAACACATCATTTAAATTGGTGTGTATTCTTTCATAATACATTAACAAATCCTTCGGGTAAGAAATGTTAAAGT # Questionable array : NO Score: 8.68 # Score Detail : 1:0, 2:3, 3:3, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTATCTTAACTATAAGGAATTGAAAC # Alternate repeat : GTTTTTATCTTAACTATAAGGAATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 1 19678-19313 **** Predicted by CRISPRDetect 2.4 *** >NZ_SFCD01000042.1 Aeribacillus pallidus strain TD1 NODE_42_length_30396_cov_121.342078, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 19677 30 100.0 36 .............................. GAACACTTGTTGACGAATCGTTGAAAATTAGCGTTT 19611 30 100.0 37 .............................. AGAAATTAAAAACACTTTATGACGAAGCAGAACATTG 19544 30 100.0 40 .............................. AAACAAAAAAGAGATGGGAAAAATAAAAAACGGGAGCCAG 19474 30 100.0 35 .............................. ATTTCTTTTGATTTTCTTTTACCATCCTTACGTAA 19409 30 100.0 37 .............................. ATCTCCGACTGTCTAAACTTCCCGCGTCGGAGATCCC 19342 30 83.3 0 ................AA.....C.T...T | ========== ====== ====== ====== ============================== ======================================== ================== 6 30 97.2 37 GTTTTTATCTTAACTATGAGGAATTGAAAC # Left flank : TGCCGGCTATGTATGCGCCGGAGCGGACGAGTTGACCCAAAAAATGCTTGAGAAATATATTGTTCATATAATTTTTGGATTTAACAATCAATTCTTGTATAAATTTACATCTGGTGTATAATCAATTTGAGATTCAAAGGCAATCACCATATTACAAAATCAATTGATGAAAATGTTCCAAAGAAAGAAAGAAGAGATCGAGAAAAAGCTGGTGGAATATTCGTCTTAATACAGAAGCAGCAGTAAAAAATATTCTGGGAAAAAACACGGATTTAAACAAAATTGAATTGTCGATCTGCAGACAAACGTTATGTTTTAAAAATAATGAAATTTGTCGTCGACCTCCAATCGTGCAAAAAAACTGGGGGATCGACGACTCTTTCAAATCTCCATTGAGCCCGCACAAATTAAAGGATTGATAAAATATAACTCCTTCGTTAAAATGAAAATAACCAATCAACCATTTAAAACGAAATGCTTATTTAACAACATTTTCTGGG # Right flank : AAGGCACTTTGTTTTGAAAATGCATAGTTCCAGCGTGTTTTTTATTTTTAACTGAGAAAAATATTAAACAAAAAAGCACGGCCAATATCAATACGGTCGTGCTTAATCTATTTTTATGGTCGGAGGAACGTATTGTAGATCCGGACATCAATGCGTGAGCAATGCCTTTGTTGAATAAACATTTGTTTTGGCCACTCCTTGTGCGAGATAAATCAGTTTGAAGACTTTAGCCGATTCGACTTCTTTTTTTCAAATTTTGTTGCGAAATTTGGGAACTACACAACGCTGCACATAGGTTTTTGGATAAACGGTTTATTGGTCTCTTCTATACTGGAAAGTACATTGAGTGACCTAAAAACACTTAATCTTAATTGGCTAATCTAGTTAACTTAAAAAAAGAAGAGTGCGAGTACTCCCTAGTTTTTATTGCTCCTCACGAAATTCCCTTTCAATCTATTGACCCAAAACCCTCCTTTAAAGTATTTCGGTTCGTATGAAAT # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.19%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 30174-29941 **** Predicted by CRISPRDetect 2.4 *** >NZ_SFCD01000042.1 Aeribacillus pallidus strain TD1 NODE_42_length_30396_cov_121.342078, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 30173 30 100.0 37 .............................. AAAGAATCTTTGCTTGCATCCAACTCGAACCTAGGAC 30106 30 100.0 36 .............................. TCTACACTTTCTAACACCTGTATACCATTTAGAACC 30040 30 100.0 37 .............................. TATCCTCTTGTATACACTTCCTCTACTTGTGAAAAGA 29973 30 90.0 0 ...................A.....TT... | AAA [29948] ========== ====== ====== ====== ============================== ===================================== ================== 4 30 97.5 37 GTTTTTATCTTAACTATGAGGAATTGAAAC # Left flank : GGATTTCATTGTCGGCAGGCAAACTTTGAAATCTGTTTTAAACGGAAATAAAAAAGAGTCGTCGACTCCCAATCGTGCAAAAATCCCGGGGATCGACGACTCTTTCAAATCTTCATTGAGCCCAAGCAAATCAAAGGATTGATAAATTTTTACTCATTGGCTAAAATGAAATTAACCAATCAACCATTTAAATCGGAAAGCTGATCTAACAACATTTTTTTG # Right flank : CAAAAAAGCACGGCCTATGCGGTCGTGCTTCATCATTTTTATAATCGGGGAAACGGATATAAGTTAAGTTCGGAACATCAATGAGCCAGCCGATGTTTTTTGTGAAAGTGATGTCGGAGCGGGGGGGCATGGAACATCAAAATAAACGAGAGAATATTTTATGGTTCTCGTCAGATTAGGCAGTGCTTATTTCATAAGGTCAACTGCTTCGAAATAGTTGAATTTATTTGAGCTTCTTCAAATTTCAAAAGCAATCTCATTCTCTGGTCAATCTCAATTCTTTTTTGGCTTCTTTGTCGACTACAATTTTCTCATGGATATATCCGAATTTACCTTTTGAAGTTCCGCAAACAGGACATTTTTGAAGTGAAAGAGGTAATTCCAAGCCACAGCTATTCAGCAGATCTTCATTGGATAAAATGTCCACTGCGGTTCCATCTGCAGCTATTTCTCCTTTTTTTATCACAATAATCCTTTTACAGGTTTCAAGTACCATGTCC # Questionable array : NO Score: 8.74 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 8428-8264 **** Predicted by CRISPRDetect 2.4 *** >NZ_SFCD01000044.1 Aeribacillus pallidus strain TD1 NODE_44_length_28571_cov_118.064069, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 8427 30 100.0 37 .............................. AAAATCATTTCAACTGCATTCTAGAAATACAAAAGGA 8360 30 100.0 37 .............................. TTTTCAAAGTCGATGTCATCCCATGTCAACGCCAACG 8293 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 3 30 100.0 38 GTTTTTATCTTAACTATGAGGAATTGAAGC # Left flank : AGCTCTGCCTTTGTGCGGAGAAAAAGGGGTTGGTTTGCCTATTTTTAAGGGAACCTATAATAGATATAGATAATGTAAAAAATAGAGGGTGAATCTGCCAACTTTTTCTTAAATCGATATTCGATAAGGAATGTTTCCTCGTATTTTTATCCCATCGCCATGTGTTTGACCTTTTTCTGTCATTTCATGAAGGATGGACAGGTTTCGGTAAGTATGCCATTCTTTATTTGGAGGCCGGAATTGTAATTAAGTAAGAGGTGTTAAATCAAGTTCCAAAATGATAGAATTGTTGATCGGTACATGTGGAACACCTGTTTTAAACATAATAAAATTTGTCGTCGATCTCCAATCGTGCAAAAATCTCAGGGGATCGACGACTCTTTCAAATCTTCATTGAGCCCATGCAATCAAAGGATTGATAAAATGTACCTCCTTCGCTAAAATGAAAATAACTAATCAACCACTTTAAACCAAATACACATCTAACAACCATTTTTGGG # Right flank : CCTGTTGTGGATGGCGCAATTTCCGCCCAAAATATGCTTTTATTTTAAACTATGAAGAAAAACTTTAAACAAAAAAGCACGGCCAATGTGAAGTGAGCCATGTCAAGTAGACAGGAACATTTTATCCATCTTTCAGAATTGAAGTATTTTCATGATATACAAGCTATACTTTTTCAAGAAAAAGAAATCACATATCTATTTTTATAGCGATCATCTCTACAATCCAGCAGGAAATTATGCACAGACTTGTGAAAGATAACGGCCAATCTTATAAAAAATGTATTCAAAAGTGATAGCTTCAAAACTATGAAATTCGTAAGTACAAAGTAAAAGAAAGCGAAAGAATGGAACACCATGAAAGACGAGGAAGGTCGTCCGGATCGTACCAATCGGGAAGAAAGAAGTTAAACTGCAGCCAATCGAATGCTAGACGAAAAAAAACTGTAGAGCGCATATGAATCCATATTCAAAAATCCTTCAACGCTTAAATGTTTCATTTC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATGAGGAATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 58-551 **** Predicted by CRISPRDetect 2.4 *** >NZ_SFCD01000114.1 Aeribacillus pallidus strain TD1 NODE_114_length_6968_cov_131.433386, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 58 30 96.7 34 ............................G. ATCTCTTCAAGTTCTAGTTCCTCATCAAGGCTTG 122 30 96.7 35 ............................G. AAACCTTCAATCAAAACATTTAAAACGTCTGACAT 187 30 96.7 37 ............................G. GTTTGAAAGCCTGCTATTTTTTCATCTGATGGATGTC 254 30 100.0 34 .............................. TAATAAGGTGGGATACCTACACTTTCCTCAAGCA 318 30 100.0 39 .............................. CATCATTGACTTTGTACCAAATTCTTTCAGAAGCATTTC 387 30 100.0 37 .............................. ATGAAATTTTAAGTTTTGTAACATTGTTGTAACATAA 454 30 96.7 38 .................A............ TTTTGTTTTCTATCGTCGAGGTAAATCTTGATGGCTAG 522 30 83.3 0 .................A..A.C..A..T. | ========== ====== ====== ====== ============================== ======================================= ================== 8 30 96.3 36 GTTTTTATCTTAACTATGAGGAATTGAAAC # Left flank : TAAAAATAACCAGTCAAGCATTAAAAATGAAATGCTTATTTAACAACATTTTTTGGGG # Right flank : CTCATTCATTCGGACTGGTTCACAACACGTAGGGCAACGTTTTTCATAATTTATTTACTACCCTTTCTCCTTGACAGATGTCTGTAGGAGAAAGGGTTATTTTATTGGCGAACATGATGTAGAAGATTCCTTTTTTTCTCGTTTTGGATTAAATGGACTTGTCATATGATCGTTTGTGACTGATTTTTGTCATAAAACGATCATTTTTGAATGTTTTTGATAAAAAATGATAGATTTTCGAAAGTGCTTACACTATAATGAAATTAGAGAAAGAGAAAACATCCAGATGGGAGTTGATAAGGTTGCTAACACCAGAGAGACACCGGATCATTTTAGAGCTGTTGGAACAAAAGGGAGTCGTCAAAATTCAAGAATTGGTGGAGGCAACCTCTTCGTCAGAATCTACGATTCGAAGAGATTTAAGCCAATTAGAAAAAGAAAAAAAGTTAAAGAGAGTTCATGGCGGAGCTTCCTTATTTCAACAAAGAAGTGAAGAGCTG # Questionable array : NO Score: 8.76 # Score Detail : 1:0, 2:3, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 52319-52088 **** Predicted by CRISPRDetect 2.4 *** >NZ_SFCD01000012.1 Aeribacillus pallidus strain TD1 NODE_12_length_62454_cov_143.657158, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 52318 30 100.0 38 .............................. TCGTTGGATTGCGATGCATATGGGGCTTTCCCATTCGC 52250 30 100.0 38 .............................. CCGAATCTAAAAGGTATGTTCTGGCTCACCGATGTACC 52182 30 96.7 36 .........................A.... TGTATCAGACCGCAAGAAAGGCTGAAGCAACTCTTC 52116 29 80.0 0 ..........A.C.C..A..-.T....... | ========== ====== ====== ====== ============================== ====================================== ================== 4 30 94.2 38 GTTTTTATCTTAACTATGAGGAATTGAAAC # Left flank : TATCAAGCGGCAACATTAAAATTTATTAAAATGATGTGAAAAAGCGTTCATTGATTAACTAGGGAAGCAAGAATGATGTCTATCTCTTTAATAAAATACTTAACAAGTGCCGCACTCTTAAATATTAAAAGTCAATAGAAAAAGGAAGCAGCCTAAACCTTCTATATTCGTGTTTTAGGCTGCTTTTTAAATAAAATTCCTCGTCTTATCATTTGTATAGCTGAGCACCAATAATTTGATGATGTATAAAAGTTTGTGTAAAGCATTTTGCTAGACCAAAAGGAAATAGGGTATTCTCTGATTTGGACAAAAACACATTCCAGAGAAAGGAGAACCCTGCCTATGGCTAAAAGTATACCGAATTTTTTTGATTAACGACACAAAAATTGCAGAAAATAAACGAAAAACAGAGAATTGATAAAAATTCCTGTTTACGCTAAAATTGAAATAACAAAATTTTCATTATTATCAAAATCTAGTCATATCAACAACTTTTTGGG # Right flank : AATAATCTCGATATCACACGATAAAAGAGTAAGAAAAGCTCATAGACAAATAGATGGAAAGTTTTTTTGTACAGTAAATAATCCACCTGCAGGAGGGCTTCCTGGTAATCCGTATGGTTGTAGGTACGTTACGATACCAAGCATTTGATGATGAAGAATTAAGCGAAAAAGTTGAATGTAAACCGTTAATAGCATTGTTGAAGTGAAAGAATTTTTCCAAATCAGTTTATTAGGGCGAAGAAGAAATATTTTTGGATAAAGAAGCGACTTTTAAAATAAAGCAGATTATAGTGATCACAATTTTTTATGTGAGATGGTCAAGAAAATGAAAGAGGATAGTAAAGAACCTGTTGTTACTAATAAAAATAAACCTGTTGATGATCAAAAAGAAAAACAAAATGAAGATACAAGATCTGATCGTTTTTCATAGAAGATAGATGATGTTGAATTCCATTAATTTTTCAAAAATTGGCGCTCCTTTTAGGAGTGCTTTTTATTTT # Questionable array : NO Score: 8.57 # Score Detail : 1:0, 2:3, 3:3, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 54546-54382 **** Predicted by CRISPRDetect 2.4 *** >NZ_SFCD01000012.1 Aeribacillus pallidus strain TD1 NODE_12_length_62454_cov_143.657158, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 54545 30 100.0 36 .............................. ATCCTGTCTTCATGAACAGAATGACATTGTCTTTGG 54479 30 100.0 38 .............................. ACGACTAGATGATCTAAAACCGGAATACCTAGGATTTC 54411 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 3 30 100.0 38 GTTTTTATCTTAACTATGAGGAATTGAAAC # Left flank : GGTGGATGGTACCCAGAAGACACAGTTTTCTCATCCATATGATGAAGCATTTCCACATTTAGTGGAGCTTAATTTTCGCAATAAGTATGAAGCCTATTACGGAGATCCGCCACAAGAGAGATTGTTTATTGAACCTTTACATGTTACTAAGAGACATAAAGTCGTCACGACTTTTAAAAATTACTATATCACTGCATGGCAGGGAAGGTATCGTTTGCGGTCTTCTCCGAAGTATCTTACTTTCCTTTTGCAAACTGGAATAGGGGGACGAAATTCTCAAGGGTTTGGAATGTTCCGTGTTATTCGTGAATTTTAGTAACAGGGAAATATTTGTCGTCGACCCCCAATCGTGCAAAAATCCCTGGGGATCGACGACTCTTTTAAATCTTTATTGAGCCCACCTAAATCAAAGGATTGATAAAACTTACCTCCTTCGTTAAAATAAAAATAACCAATCAACCATTTAAAACCAAATACTTATGTAGCAACAATTTTTAGGG # Right flank : ATTTTACATTGACAGTGTTTTCTGACTCCAGCGCAACATGTTGATTCTTATGGATTTTAATGACCAGGATGATGATGAAATTTTGCTTGACATCCTGTAGGAAAGTACTAATAGTCGAAAAATGGGAGTACAATATCACTTGGCTTTAGACGCATCAAGACCATATTTTTTATTGTACGGATTAGAAACTTACGGTATACGGGGTCTTCCCTCATTACAATCACGTAGTGGGGGACAGGCCCCATAATCATTTCATCATAAATAAGTCTCAAGACTTAGTTGAATATACATTTGAGGTCCATTTTGGAAAATGACTTTTCTCTGTATTCTAAGGAAGAGAAAAGTAATTGAATTTGTTTTTCCTTTAAATTCATTTAATCAATCCAGCTTGAAGTTTTTGGATAATAGCTGTTTATGAGGCTAAAAATCTTCTCTAAAATAAGAACGCGAAAAGGCTGTGGATTTGGAGAGTCATTGCTTTTTTTGTATTTGTTTAGGCG # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.19%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 5320-4823 **** Predicted by CRISPRDetect 2.4 *** >NZ_SFCD01000128.1 Aeribacillus pallidus strain TD1 NODE_128_length_5492_cov_90.998713, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 5319 30 100.0 37 .............................. TGTATGACGCCGTAGCGACTGTCCCAGCCGAAATAAA 5252 30 100.0 36 .............................. ATGCGTGATACTGAACTACAAAAACGCTGTTGGTAC 5186 30 100.0 36 .............................. TTTTTCGTTTAGATATATCGCTATTTTTCGATCGCT 5120 30 100.0 37 .............................. TCCAGGGAAAGTCTGTTTTTGCGTTCAGACGTTGAAC 5053 30 93.3 37 ................GA............ GAGGATGAAGACAAGGATTATAAAACAGACGATCCTG 4986 30 93.3 35 ................GA............ ATAAGACTACGCAATTCATTCATCGCCCTGGATTG 4921 29 86.7 36 ..........-.....GA...........A CCTCTTAGATTGGCGTTCCCTGTTTCAGCTAGGTGC 4856 30 86.7 0 ..............G.T..A.....T.... | TAAA [4830] ========== ====== ====== ====== ============================== ===================================== ================== 8 30 95.0 36 GTTTTTATCTTAACTACGAGGAATTGAAAC # Left flank : AAATTTGTCGTCGACCTCCAATCGTGCAAAAATCCTAGGGGATCGACGACTCTTTCAAATCTTCGTTGAACCTTGACAAATCAAAGGATTGATTAAATGTAACACCTTCGCTAAAATGAAAATAACCAATAAACCATTTAAAACCAAATACTTATCTAACAACAATTTGTGG # Right flank : CAAAAAGCACGGCCTATACGGTCGTGCTTAATCAATTTTTATGGTTAAGGAAACGGATGTAGCGCTGAAACATCCATGAGCCAGCGATGCCTTTGTTGAAACATTTGTATTGACCGCTCCTTATTTATGTGCGATGAAACAGCTTGCACGTCTCTGTATTTTTTGCTTGCAAACGATAGAAAGAAATGAAGAAGCCCATTCTTCATTCCGATCACGGTGGCGTTATCTGATGAAGCGGTATCAACAAGTTTTATAAGAACAAGGGATCACCCAAGAAGAAGGTTATTAACTTTCTGGTTAATATATATTGTCCACATGAGCGCTTACTAGGCGCTCATTTTATTTACTGATAAGCGATCAGATCAGGAAATTCATTTTATTTACAAAATTAATTGTGTGCATACCACAAAAAATACTAAAAAAAATAATCATTACAAACAAATAATGTAAAAAATACTCCAAATTACCTATAAATGTGATAAAATGATAATTAAGGTAAA # Questionable array : NO Score: 9.07 # Score Detail : 1:0, 2:3, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTACGAGGAATTGAAAC # Alternate repeat : GTTTTTATCTTAACTAGAAGGAATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 28-396 **** Predicted by CRISPRDetect 2.4 *** >NZ_SFCD01000140.1 Aeribacillus pallidus strain TD1 NODE_140_length_2585_cov_111.889328, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 28 30 100.0 36 .............................. TATCCATTGTGACATTGCTTGTTCCCGGCGTTTGTC 94 30 100.0 40 .............................. GTGCTTGTGTCATAGCATCTACCATGTCGTCATGCTTTCC 164 30 100.0 37 .............................. TATACTTGTTCAAGATCGGACATCAGGTTGGCAAGCC 231 30 100.0 38 .............................. TTCGTTGAAGATGATCACCTGAAACGGGTTGTAAAAAT 299 30 100.0 38 .............................. TGTCCCGCCGAACTGAACCTTCCGGCAGGGAAAATATT 367 30 83.3 0 ......................G..TTC.T | ========== ====== ====== ====== ============================== ======================================== ================== 6 30 97.2 38 GTTTTTATCTTAACTATGAGGAATTGAAAC # Left flank : AATGCTTATTTAACAACATTTTTTGGGG # Right flank : TCTTAAATTATGAAGAAAAGCTTTAAACAAAAAGCACGGCCTTTTGATATGATCCCCTTATAGTAGACAGAAAAAAGAAAGCCCATTAATCTGTCTACTATGGAGGGGATTTTTCTATGATATGATGGAAAGTTTAAAAAGAAAGCTGTGGATTTATATTTGAAAGAGGGTATGGGATACAAAGCGGTGGCAAAAGAATTGGGAATAAGTCATTCCATGGTACGTCTTGGCTGAAACTTTTACATAACTGAACCGGATTATTCTAATCGATTTACATAAGCATTTGATCATTCTTCAGTATTTTTGGTTGAGGTTGTCTTCCTGGATCATAAATATGGGGTTGCATTTTTTTGCTTTATCACATATAGTAAGTAGTAAGTGATAAGTAGTAAGTAGAAAGTAGGGAAATCGAAAATACATTTTTAAGGAGGTAAGTCAATTGTTAAAAGATTTAACTATTCCTCAAGAATTTGTATTATTAGCTTTAGACCGTGAAACAA # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.19%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 171-1130 **** Predicted by CRISPRDetect 2.4 *** >NZ_SFCD01000106.1 Aeribacillus pallidus strain TD1 NODE_106_length_7911_cov_114.792261, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 171 30 96.7 38 ............................G. GACCCTTTTATTTGGTTTTCTTCGAAAAAGTAAGATAT 239 30 96.7 36 ............................G. TCTTCTTCTTTGTCGGACATTTCGCACATAATCTTA 305 30 96.7 37 ............................G. ATTTCATAAATTCTTCTCTGGAACGTCCTGATCGTTC 372 30 93.3 35 .................G..........G. GTTAGTGGCGGCGACACATATCCGTTGTGGGGTTT 437 30 96.7 38 .................G............ CATTTGTGTGTATGTCCTTTCATTGGGGATCCACATCT 505 30 100.0 38 .............................. ACTTTTCATTTTAATTCCTCCCATTCGCTCGTGATTTT 573 30 100.0 35 .............................. AACTATACGCACTTCAAAAGCTCCAGAGGGACGTT 638 30 100.0 36 .............................. ATGGATCCACCAACTCCACTTGCGTAACCGGGCATA 704 30 100.0 34 .............................. ATCATCAAGTTCGCCGAACCCGTCTCCATAATCT 768 30 100.0 39 .............................. CGAGAAAGAACCAAGCCATTACGCAAGATGAACCACACC 837 30 96.7 36 ............................G. TGTTTAACCGCAACCTCCACGATATTGGGAAGAATA 903 30 96.7 35 ............................G. GCTTGGAAAGAAGCAAAAGCAATCGCAGCAAACGA 968 30 100.0 37 .............................. ATACAGTCTACGCAACAACTCATTATGTGATAGGGAA 1035 30 100.0 36 .............................. AGTCTGGAAGGAAACACTTGACACAAGCCACCTTGT 1101 30 90.0 0 ............C...C.........C... | ========== ====== ====== ====== ============================== ======================================= ================== 15 30 97.6 36 GTTTTTATCTTAACTATAAGGAATTGAAAC # Left flank : TTTGTCGTCGACCTCCAATCGTGCAAAAATCCTAGGGGATCGACGACTCTTTTAAAATTCAATTGAGCCCACGCAAATCAAAGGATTGATAAAATTTGACTCCTTCGTTAAAATGAAAATAACCAATTAACCATTTTAAACGAAATGCTTATTTAACAACATTTTCTGGGG # Right flank : CACCAAACTAAAGGCCTTTACGTTTGATGCCTACCAATTGCTCCCATTATAGACCCCGCTGTTAAAAATAAGGAATAAAAAACTTTGAGGCGGTCATATGATACATTTGAGATATAAAAATATTGTGCCGATATGATGTTAAAAACAGTAAAATTGATGCAGGTATTTGCTTATGAAATATGATTAAGGTGTTTCCTTGTCTTCTAAATACAGGCATGGCATCACGATCCCCATAAATGTAGATGTAAATCCTGCTGGGAAGTTTGAATATTGGTCATTTCCTTCATGATTAGACGGATGCCCCCCATTCCAATGATGAAAGAGCTGTTTAAGGCGCCACACCCTGTTCCAGTGAAAGATGCGCTGCAAATTAAAGGTTTGGATGCCGGTACGGTTGCCGCTTTGACAGAAAAAGATTGTACAAAATGGCATCAAAAGAATGCCACTGGATGTACTTGTTAGCCAATGGCGATTCAGCTCCAAACCTTCTTGTTCTGGCC # Questionable array : NO Score: 8.90 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.57%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 26-251 **** Predicted by CRISPRDetect 2.4 *** >NZ_SFCD01000161.1 Aeribacillus pallidus strain TD1 NODE_161_length_825_cov_136.938961, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 26 30 100.0 35 .............................. ATTGACAAGAAGGAGGAATTCACCAAGCTTTTGGC 91 30 100.0 35 .............................. AATGGATTTGTTCGTGATAACCAATCCGATGAATA 156 30 100.0 36 .............................. TACTTTGCTAGGTTCACGACGAAAATTTTAATCATT 222 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 100.0 36 GTTTTTATCTTAACTATGAGGAATTGAAAC # Left flank : TGCTTATTTAACAACATTTTTTGGGG # Right flank : CTAAGATGGGCAGTCAGATAGTGATATGCCCCTTAAGGTAGACAGATTAAAATATAAAAAATCTGTTTTATCTTAGGGGAGTTTTTCTATGTATAAGAATATACTACAGAGTTCAAACTTGAAGTTTTACATGCATATGAAAACCAAGAATGTACTATTCAAAAGTTTGTAAAAGGCATCAAATTACTAAATATTCTTTAAGGCAATGGATAAATGAATTTGAGGAATTTGGAATAGAGGGTCTAGAACGTTCAAATTCTTGGAAAGGTTTTAAGGAAGCAGCTGTAAAAGATTATTTATCTGGTGAGTTCTCACAGTACGAGATTGTCAGGACATATGGTATTAGTAGATCGGTACTTCAACGATGGATTAAGAAGTATAATAGCCATAGAGATTTAAAGGATACGTCGAAAGGAAAGACAAGCTCTATGACTAAAGGAAGAAAAACGACTTGGAATGAACGGATACAAATTGTGCTTAATTGTTTAGGGAACGGAAAA # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 1836-77 **** Predicted by CRISPRDetect 2.4 *** >NZ_SFCD01000108.1 Aeribacillus pallidus strain TD1 NODE_108_length_7574_cov_166.242186, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1835 32 100.0 34 ................................ TTTTAGAGAGTTTGTTTTTCATAAAACCACCTCC 1769 32 100.0 35 ................................ ATGCATAAATGCGTTAAACTGTCGCGCTGGTGAAA 1702 32 100.0 35 ................................ AACAAATGCAGGTGGAATTATTTTGAACACTACGA 1635 32 100.0 35 ................................ TTAAACTTGGTTGATGCAGGTCCGAAAGCATTAAG 1568 32 100.0 35 ................................ TGTGGCCTCATGCGCAGCATAAAGTCCTAGTCCCA 1501 32 100.0 35 ................................ CACACCATCCACCCCTATGCCTTAGGTTCGTAAAT 1434 32 100.0 34 ................................ ACAATTATGAGATTTATTTTTACGATCCGGGAGA 1368 32 100.0 35 ................................ AGCGAAGAATAGAGCGACTGTTGTAACACCTAACC 1301 32 100.0 34 ................................ AAGAACGAAATGTAGAATTACAGCTCATGTGCAA 1235 32 100.0 34 ................................ CTCATGACGTTTGAGGCGTTCCTCTTCACAATGG 1169 32 100.0 35 ................................ TTTGAAAAAAATGAAAAGTTTGCATATTGAAAAGC 1102 32 100.0 34 ................................ CATCACCCAGACTTCCTTCCGGCATCCCAAACAA 1036 32 100.0 34 ................................ ACTTAATAGTGATACTCAGGAAGTCATTGCTTCT 970 32 100.0 34 ................................ CGTCATATACCGATTTTCAATCCCCGCAACAGCT 904 32 100.0 34 ................................ AACGTCGAATCGGCGTAATCAAAATGGAAGCACT 838 32 100.0 34 ................................ CCCAGAAGCTTTCCGATATTTTCGTATTTTCGCG 772 32 100.0 36 ................................ AACAAATGTAGCTGACGGATCTTCATGTGTGTAGTC 704 32 100.0 35 ................................ GATGAATTTTTGGCGGTCTATATCCGAAGGAAGTT 637 32 100.0 35 ................................ GTCGCGGCGTTGTTGTTGATATCGCTCACTGCCGC 570 32 100.0 34 ................................ AGTTCGTCCGCTTCTGCTTGCGTTGCAGCTTTTT 504 32 100.0 34 ................................ ATTAGATCGCAAACCACATTTCAACATAGTCAAC 438 32 100.0 34 ................................ AGTGACGATTGAATCTGGGTCTTTGGTTAGTAAA 372 32 100.0 34 ................................ AACGTCGAATCGGCGTAATCAAAATGGAAGCACT 306 32 100.0 33 ................................ GAGGAAGCACCTGACGAGATCAAAGGTGTACAG 241 32 100.0 35 ................................ CTCGAAAAGGGTCATCTGACAGTCGACAAACATTT 174 32 100.0 34 ................................ TCGCTACTATACCACGAATTGTTCGATCTGTACC 108 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 27 32 100.0 34 GTCGCATCCTTTATGGATGCGTGGATTGAAAT # Left flank : TTGGATGAGTATCCACCATTTTTATGGAAGTAGGTGTAAATTTTGTTAGTTTTAATAACTTATGATGTTAGTACTGTAAGCAGTGCAGGACAAAAAAGATTAAGGAAAGTGTCAAAAGTATGCCAAAATTATGGCCAACGAGTCCAAAATTCAGTTTTTGAATGTAACGTCGATGCAGCCCAATTTACAGCTTTAAAATTAGAACTTACCAATATTATTGATGAAAATAAAGATAGTCTCAGGTTCTATCAACTAGGAAACAATTATAAGTCTAGAGTAGAGCATATAGGTGTGAAAGCATCACTTGATTTAGAAGATCCTATAATTTTTTAGTGCGAATGTATAGTGAGCTTGAAATTCTTGATACATTCGCACCTGATTTTTTTGAAATTATTGCCATATTTTATTTTTTTTTGAAAAAAGTTCTTTATTTTTATAAAGAAAATGGCGGTTTTTTGTCAAAATTACATCAATTTAAGTAATTTTGAGGAAAAATCGCT # Right flank : TTTGTAGGGGAGGTGAGTGCTTTGATGTTAGACTAAAAAGTAGACACAGATTATTATAGTAATAATAGACTGAAAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTTTATGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched TTCGCATCTTATATGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.70,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 252-22 **** Predicted by CRISPRDetect 2.4 *** >NZ_SFCD01000185.1 Aeribacillus pallidus strain TD1 NODE_185_length_277_cov_164.900901, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 251 32 100.0 34 ................................ TTTTAAATCGTATCTAGTTCCGTTTTGCCTTACG 185 32 100.0 34 ................................ AAGCTGAACGACTAGCTTATCAACAAAGGAAAGC 119 32 100.0 34 ................................ CTCTATTTTTTGTTTTGTCGTACTCTGCAGGTAT 53 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================== ================== 4 32 100.0 34 GTCGCATCCTTTATGGATGCGTGGATTGAAAT # Left flank : ACAACGGAACAGCGCCCGGCGATCC # Right flank : TATGGAACTAACGAAAAGAAAG # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTTTATGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched TTCGCATCTTATATGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.70,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [23.3-15.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 256-24 **** Predicted by CRISPRDetect 2.4 *** >NZ_SFCD01000189.1 Aeribacillus pallidus strain TD1 NODE_189_length_257_cov_161.539604, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 255 32 100.0 35 ................................ ATGGAACTAACGAAAAGAAAGGAGGCGCAGCATGG 188 32 100.0 33 ................................ CCCTACACCGCCATTAAAATCATGTTGCTTGTC 123 32 100.0 36 ................................ TACTATATTAGATTGGCTTGAGAAACAGTCCATGAT 55 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 4 32 100.0 35 GTCGCATCCTTTATGGATGCGTGGATTGAAAT # Left flank : A # Right flank : TTCTGAACTACAACGGAACAGCGC # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTTTATGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched TTCGCATCTTATATGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.70,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [18.3-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //