Array 1 65895-64501 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTKE010000003.1 Listeria welshimeri strain FSL W9-0540 NODE_3_length_384081_cov_71.400462, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 65894 29 100.0 35 ............................. AACGGAAACGCTGTAGTAACGTTTACATTAGCTGT 65830 29 100.0 35 ............................. TTTGTTCGATTTCGCTAATTTGGTAGTTTGTAACT 65766 29 100.0 38 ............................. GTCGGAAACGTAAATCCTTCTGGCCAAGGCATGAACGG 65699 29 100.0 37 ............................. TTGTTTGCTAAATTTAACAACGCTTTTTCGGTACTTG 65633 29 100.0 36 ............................. AACGTTTACCGATGGGGAACATATAGTGATCAACAA 65568 29 100.0 36 ............................. CTTTCTGGCGCAACTTTTAAAGTGAAAGACAGTGAA 65503 29 96.6 34 .........G................... TTGAAGGAGGAGAAAGAAAAATGAGTTTTAATAA 65440 29 100.0 37 ............................. CTTGTTTTCCAAAGTTACATGTCCGCAGGTGAAACAC 65374 29 100.0 36 ............................. TAGACTGTTTATAGTTTGCATATATTCCATTTTAGG 65309 29 100.0 36 ............................. TCTTTAGACTTTGCGGCATCCAAAACAACTTGTTCG 65244 29 100.0 36 ............................. ATTGTAATCGCTGTTGCTGCAGTAATAGCCATTTTC 65179 29 100.0 35 ............................. AGATATGTGGGACTATAAAAACGAATTGGAGGCGA 65115 29 100.0 34 ............................. TTGGCTGTGGTAACACATGTGTTTTCTTTACAAG 65052 29 100.0 37 ............................. GTTGAAGTCATCATTAGTGATGACTAATGCAGGTCTC 64986 29 100.0 35 ............................. TTATCTTTTTCTAAATCGGCAATACTATAGTTATG 64922 29 100.0 36 ............................. AAACTTATTCACTTAAAAGAGCATATCAATCAACTT 64857 29 100.0 38 ............................. AAGAAATTCGTTAATCATTTAACGGCTAAAACCCTTGA 64790 29 96.6 36 ...........................G. GTAAAACAAATTAATTAGTTCATGCAAGGTGCAAAT 64725 29 100.0 37 ............................. TGGGTAAGAAAGAAAAAGAAAAGTTCTGGGAAAAAGC 64659 29 100.0 36 ............................. TATTCTCTTTTAATTTCTAAAAATATAACAGCGTTT 64594 29 100.0 36 ............................. GAATTATTTGAAACTGATACCGCCGGAACAGTCCAT 64529 29 89.7 0 ................A......C....C | ========== ====== ====== ====== ============================= ====================================== ================== 22 29 99.2 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCAATAGAAAATGGTGGAGCGAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAGGGTGAAATAACACCTGCTCTTTTAGTGAAACTAAGAATGGAGTTAGATAAGTATATTCGAGATGACCAAGATTCAGTAATTGTATTTTCTAGTAGACAGCAAAAGTGGCTAGAAAAAGAATTTTGGGGGTTAACGGATGAAAAAAATTCTAATTTCTTTTGATGTTCTCGATCTGTCGACCCTTAGTAGTGCGAAAAATAGTAGGGTTCGACAGATTGACGGAGATGACTGGGGGAGAATGATTTTAAAGGTTTTTAGTGAATATCCGAAGAAATAAGTTATAATTTTTATGCAATTTTTCAGAGGTCGACAAAAATAGTGCCCTGAGGTATGATGGGAGTAGGAGTAAAAAAGGGCGG # Right flank : TCCTCCCCTCAACAATACACCTCCAAAAATAAAAAAATAGACCTCAACCTCAGTCCAAATTTTTTTCAATACTACCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCACCGCCAAACAGCGCCGCCACAACCACACAACTTAAAAAGAAAATCTGCACAGTTTCAGCCATCTCTGCTCCGGCGAAAAATAATCCCCACACAAGTCCTGCTGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAACAGCGTCTGTACTTTCTTATTCGCAAGTAGTTCCTTCTCCACACCGAACGTCCTCGATGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATAATATAAATATGTTCTATCATTACGATGAAAGTTAAAATAAATGCTAAAATGTCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATGAATTGTAAATTTTTCATGAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //