Array 1 93026-94701 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFTU01000005.1 Escherichia coli strain CVAST2484 NODE_5_length_206549_cov_72.5967, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 93026 29 100.0 32 ............................. GATACGCTTCATCGCCCGACGTGGGGAGCATA 93087 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 93148 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 93209 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 93270 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 93331 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 93392 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 93453 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 93514 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 93575 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 93636 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 93697 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 93758 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 93819 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 93880 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 93941 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 94002 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 94063 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 94124 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 94185 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 94246 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 94307 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 94368 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 94429 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 94490 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 94551 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 94612 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 94673 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 110203-111267 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFTU01000005.1 Escherichia coli strain CVAST2484 NODE_5_length_206549_cov_72.5967, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 110203 29 100.0 32 ............................. ATTACATCCGGCAATATCATGCTGATGCCTCG 110264 29 100.0 32 ............................. GGCGGGCCGTTGGCTAAACGCTGCGATCTGCC 110325 29 100.0 32 ............................. GGACGCCCAGGAAAAGGACATTGCAGCGTCAT 110386 29 100.0 32 ............................. GGACGCCCAGGAAAAGGACATTGCAGCGTCAT 110447 29 100.0 32 ............................. AAGGTCGTAAACATTGAAGACGCGATCGCGCG 110508 29 100.0 32 ............................. TAACAGGAATGTTTACGCTGGCTGAGGCTGAG 110569 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 110630 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 110691 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 110752 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 110813 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 110874 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 110935 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 110996 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 111057 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 111117 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 111178 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 111239 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //