Array 1 243643-241860 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMRA01000003.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SL_69_S11 contig00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 243642 29 100.0 32 ............................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 243581 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 243520 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 243459 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 243398 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 243336 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 243274 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 243213 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 243152 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 243091 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 243030 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 242969 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 242908 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 242847 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 242786 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 242725 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 242664 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 242603 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 242541 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 242438 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 242377 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 242316 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 242255 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 242194 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 242133 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 242072 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 242011 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCATTATTTCGC 241950 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 241889 29 96.6 0 A............................ | A [241862] ========== ====== ====== ====== ============================= ========================================================================== ================== 29 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 261694-259775 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMRA01000003.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SL_69_S11 contig00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 261693 29 100.0 32 ............................. TACGCCCCGTTTTTCTCAGCGACCTCACACGA 261632 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 261571 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 261510 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 261449 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 261388 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 261327 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 261266 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 261205 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 261144 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 261083 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 261022 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 260961 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 260900 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 260839 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 260778 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 260717 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 260656 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 260595 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 260534 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 260473 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 260412 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 260351 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 260290 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 260229 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 260168 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 260107 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 260046 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 259985 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 259924 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 259863 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 259802 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 32 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //