Array 1 100273-101765 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXFJ01000011.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain BCW_2192 NODE_11_length_155784_cov_4.19852, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 100273 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 100334 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 100395 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 100456 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 100517 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 100578 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 100639 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 100700 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 100761 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 100822 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 100883 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 100944 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 101005 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 101066 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 101127 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 101188 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 101250 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 101311 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 101372 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 101433 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 101494 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 101555 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 101616 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 101677 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 101738 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 117898-119679 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXFJ01000011.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain BCW_2192 NODE_11_length_155784_cov_4.19852, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 117898 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 117959 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 118020 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 118081 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 118142 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 118204 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 118265 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 118326 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 118387 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 118448 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 118509 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 118570 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 118631 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 118692 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 118753 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 118814 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 118875 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 118936 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 118998 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 119059 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [119101] 119101 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 119162 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 119223 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 119284 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 119345 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 119406 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 119467 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 119528 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 119589 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 119650 29 96.6 0 A............................ | A [119676] ========== ====== ====== ====== ============================= ================================= ================== 30 29 98.5 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //