Array 1 276234-274757 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXAZ01000010.1 Salmonella enterica subsp. enterica serovar Typhimurium strain LT2 KO_STM3537 BCW_7503_1__paired__contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 276233 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 276172 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 276111 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 276050 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 275988 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 275927 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 275866 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 275805 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 275744 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 275683 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 275622 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 275561 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 275500 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 275439 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 275378 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 275317 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 275255 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 275152 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 275091 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 275030 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 274969 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 274908 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 274847 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 274786 29 96.6 0 A............................ | A [274759] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 294347-292366 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXAZ01000010.1 Salmonella enterica subsp. enterica serovar Typhimurium strain LT2 KO_STM3537 BCW_7503_1__paired__contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 294346 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 294285 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 294224 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 294163 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 294102 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 294041 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 293980 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 293919 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 293858 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 293797 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 293736 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 293675 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 293614 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 293553 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 293492 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 293431 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 293370 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 293309 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 293248 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 293187 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 293126 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 293065 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 293004 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 292943 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 292881 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 292820 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 292759 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 292698 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 292637 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 292576 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 292515 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 292454 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 292393 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGAGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //