Array 1 162681-161326 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAGSV010000023.1 Salmonella enterica subsp. enterica serovar Typhimurium isolate Vulture-STm-CyP-11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 162680 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 162619 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 162557 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 162496 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 162435 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 162374 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 162313 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 162252 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 162191 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 162130 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 162069 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 162008 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 161947 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 161886 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 161824 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 161721 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 161660 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 161599 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 161538 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 161477 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 161416 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 161355 29 96.6 0 A............................ | A [161328] ========== ====== ====== ====== ============================= ========================================================================== ================== 22 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AAACCGAACCGCTGGCGGGCTGATTGGTCTGCAACCA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 144-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAGSV010000024.1 Salmonella enterica subsp. enterica serovar Typhimurium isolate Vulture-STm-CyP-11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 143 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 82 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 21 21 72.4 0 .....................-------- | ========== ====== ====== ====== ============================= ================================ ================== 3 29 90.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : G # Questionable array : NO Score: 4.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17463-16275 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAGSV010000024.1 Salmonella enterica subsp. enterica serovar Typhimurium isolate Vulture-STm-CyP-11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 17462 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 17401 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 17340 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 17279 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 17218 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 17157 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 17096 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 17035 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 16974 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 16913 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 16852 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 16790 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 16729 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 16668 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 16607 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 16546 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 16485 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 16424 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 16363 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 16302 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 20 29 97.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCC # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //