Array 1 194954-196446 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEUY01000001.1 Salmonella enterica isolate STY153, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 194954 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 195015 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 195076 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 195137 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 195198 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 195259 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 195320 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 195381 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 195442 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 195503 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 195564 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 195625 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 195686 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 195747 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 195808 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 195869 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 195931 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 195992 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 196053 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 196114 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 196175 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 196236 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 196297 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 196358 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 196419 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 212578-214542 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEUY01000001.1 Salmonella enterica isolate STY153, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 212578 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 212639 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 212700 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 212761 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 212822 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 212883 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 212944 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 213006 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 213067 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 213128 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 213189 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 213250 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 213311 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 213372 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 213433 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 213494 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 213555 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 213616 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 213677 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 213738 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 213799 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 213861 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 213964 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 214025 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 214086 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 214147 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 214208 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 214269 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 214330 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 214391 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 214452 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 214513 29 96.6 0 A............................ | A [214539] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //