Array 1 16280-18051 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHDC01000012.1 Providencia rettgeri strain GMW72_S1 30_contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 16280 28 100.0 32 ............................ ATCAACAAGCTGCTTATCGAGCATAAAAGATT 16340 28 100.0 33 ............................ GTCAAACCTTTGATTACTCAGCACGTTATTTCT 16401 28 100.0 33 ............................ AGTGTAATCATCTGTCGCTAAATCCAAACGTTT 16462 28 100.0 32 ............................ ATCCTGACTTAAAAAAATTTAACGATGATTTA 16522 28 100.0 33 ............................ TTAACTGTTCTTAGGTTGGCTTAACCAGATTCT 16583 28 100.0 32 ............................ ATCCAGACCAATGTGCAGTGACGATGAAGGAA 16643 28 100.0 32 ............................ GCTGTAATTAGCCAAGTATGCAGAACTGCATC 16703 28 100.0 32 ............................ TTGTGGCATTTCCTTGCCACTGCTCGCAATCC 16763 28 100.0 32 ............................ CATCGTAATGGCGAGTCACTCCAAATTCAACA 16823 28 100.0 32 ............................ AGTACGCCTTGGCGCTTTTGCTCTCACTTCAT 16883 28 100.0 32 ............................ AAGCTAGCATCAAGTAAGATACTGACCGTAAT 16943 28 100.0 32 ............................ TCACAGGAATAGAAATCGAAATCGGTTCACCC 17003 28 100.0 33 ............................ GTTGGCATTTCTTTTAGTTCGACTTCGGAACGA 17064 28 100.0 32 ............................ TTTGCTCTCCGCCATTCCAGCGACTACGGCGA 17124 28 100.0 32 ............................ TTTGGGGAATTGCAGGAGGGATAACACCTTCC 17184 28 100.0 32 ............................ AAGAAGAGTGTAAGCGACGAACTGGAATAAGA 17244 28 100.0 32 ............................ ACTAACTACCGCGGCATTATAACCAAGAGCCA 17304 28 100.0 32 ............................ TAGTTGTATTTTCTCTAAAAGGTGTGCTACGA 17364 28 96.4 32 ............A............... AGTAGGTCATACCACGGAAAATAGCCGCAACA 17424 28 96.4 32 ............A............... AGTTTCAGTGTGTATCGCAGATATTGATTGCT 17484 28 96.4 32 ............A............... GTGACGGCCACATTATACCGCCACGGCATATC 17544 28 96.4 32 ............A............... ACGCTAGAATCAGCTCCGAAAGTTGATAGAGT 17604 28 96.4 32 ............A............... ACTAATTGGGTAGCGAGGCCACTTTCAATAAT 17664 28 96.4 32 ............A............... TCCCCACATTGAAATGAAGAGCATTAATAACC 17724 28 96.4 32 ............A............... ACAAGGTGTTTATGAGGCAGTCGCAACAAACC 17784 28 96.4 32 ............A............... CTACCCACGCCACGCTATTTATGTGATTTAAC 17844 28 96.4 32 ............A............... ATTGTGATCAGTGAGCAACGTACCGGGCAATA 17904 28 96.4 32 ............A............... GCCACCATCGCCCACTGCCATGTGCGTTAACT 17964 28 89.3 32 ..........G.AT.............. TTTCCCCTTGAAGAGCAAGGTACTTTAACTGC 18024 28 85.7 0 ............AA........A.A... | ========== ====== ====== ====== ============================ ================================= ================== 30 28 98.0 32 GTTCACTGCCATGCAGGCAGCTTAGAAA # Left flank : ACCAAATTTCTAATATTGAAGCGAAACAAGGCTTACAACTGCAAGAAATTGATAAATTAGATTTCTTGGCAGATACCCGTTCGATTCAAAATGCAGCTCGTAAAAGTGAGCTGCTTGAGACCAACTGGACGGGTACTACGACGGATTACTATAAAGAAAAGGCGATGTTTGATGCATCCCAAAGTATTTTTAAAGATTTAAACAGTATGTCACTTTTTGGTAACCGTTAATAAATTAAAGGTTTAATTTTACTCACCGCGCTTTGGAGTGATTCGAGCGCGGTTTTTTTTATTTTGAGGTACCTTTATTTACGCACTATTTTCGTTTAGTGCATATTGCATAAATCCCGATTTGTTTTACCCTAGTTTGACCTTTATTTTTTGCTATTTAAAAAATTAATTATTAAACAATAAGTTAGGATACCCTCCCAAAACAAAGGTATTTTGGCGTTTATAAAGCTAGTACATTGTTTTCCTTTGTTTTATCTTATTTAACTAATA # Right flank : ACAGCCAAGGAGTTATTTTTACTGGATATTCTGTGAAACCCCTCGCAAATTTGGCTTTAGTGATAATTTAAGGCTTGTTTCATTGGTTAAAGCTTATTCTAATAAGATTGATTCAAAAAACTTATTATTTAAGGAAGAATTCAACTGCTTATGGATGACTTTTCACCTAGTGACTTAAAAACCATCTTACATTCCAAGCGCGCTAACATGTATTACTTAGAGCATTGTCGAGTGATGCAAAAAGATGGTCGAGTGTTGTATTTCACAGAGGCAAAAAATGAAAACCTCTATTTCAATATCCCTATTGCAAATACAACAGTTTTGTTACTTGGTACAGGAACATCAATTACCCAAGCCGCAATGAGAATGTTATCTCAAGCGGGGGTACTAGTTGGGTTTTGTGGGGGTGGTGGTACACCTCTGTATATGTCTACAGAAGTAGAATGGATGACACCACAAGGCGAATATCGGCCAACGGAATATTTACAAAGCTGGTTATC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATGCAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCATACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCATGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 26689-27558 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHDC01000012.1 Providencia rettgeri strain GMW72_S1 30_contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 26689 28 100.0 32 ............................ CATAACTTCAATCTGTTCTGCTCGAACATCTA 26749 28 100.0 33 ............................ TAGAGCAAAAAATATGCAATTAGCTAAATTAGA 26810 28 100.0 32 ............................ CGTATGCACTTGCTGTTTCGAAGTGATTACTA 26870 28 100.0 32 ............................ TGTGCTTTTGCTGCTTCCACTTGTTTAACATT 26930 28 100.0 32 ............................ GCACCAACTTACAAAGCCGTACCTTTACCACT 26990 28 100.0 32 ............................ ATAAAAACCTGTCGTTGCTTGCCCCGGTAAAC 27050 28 100.0 32 ............................ TGCATGTTGCGCTTCCTTAAACACGTCGATTA 27110 28 100.0 32 ............................ AGCCCAAAGAGGGTTAACCAAACCACTACTGG 27170 28 100.0 32 ............................ AGTGCTATACAACAAAACTGGCTCGCCTATTT 27230 28 100.0 33 ............................ GCTTGCACTGCCTGCGCTATTTTTGGCTTGTTC 27291 28 100.0 32 ............................ GCTATATCCTTGTAGTACTGGAACTTTATTAC 27351 28 100.0 32 ............................ ACTAAATGCCAGTAGGCAGGAGTTTTAAAATG 27411 28 96.4 32 ..........A................. AGAACACTTTAACCGTATCGCTATCAATCGAT 27471 28 100.0 32 ............................ CCCATGTATAAACTCACGGCCTAATAACTTAG 27531 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 15 28 99.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TATTAAATCTATTCAAACCGTGCCAGAGCAAAGTGTTCCTGTCAGTTATATTCGACGACATGTAAAAGGTCAAAACCGGATAGAAGCCGATATGCAGCAAAAGGCACGTTTATGGTCTGAAAAATCAGGTCAGTCAGTGGCGCAGTGCTTGGAAGTGTTATCTAAAAGTCGGCCGAAAGCCAATAACCGTTTACCGTTTATTTGGGTTACAAGTTTACATGCAAAGAATGAGAAAACCGGAAGCCGGCCTTTTCCACTCTTTATTGAAAAAGTGATAGCAACACAAATGCAAGCTGGGATGTTTAATTGCTATGGTTTAAGCCAGCTTTCAAATGACCAAACGTTGGTTGCAACGGTTCCTCATTTTTAACCATTATTTTTTGTTCTTTAAAAAATAACTTTTAAATCAGCATGTTATGATTATTCATAAATTAAAGGGTATTTTATAATAAATACCCTTAACTAATTGTTATAGCATGATTATTATATTAAATTGCATA # Right flank : | # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //