Array 1 128569-126710 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABVOC010000006.1 Escherichia coli isolate BB1444, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 128568 29 96.6 32 ............C................ CGGGTAAAGTCTCGGCTGAGCGCGTATTGATG 128507 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 128446 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 128385 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 128324 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 128263 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 128202 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 128141 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 128080 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 128019 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 127958 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 127897 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 127836 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 127775 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 127714 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 127653 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 127592 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 127531 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 127470 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 127409 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 127348 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 127287 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 127226 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 127165 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 127104 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 127043 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 126982 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 126921 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 126860 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 126799 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 126738 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.5 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 155212-154268 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABVOC010000006.1 Escherichia coli isolate BB1444, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 155211 29 100.0 32 ............................. AGATTTGCCAAATTACGGACCTGATGCTGGGT 155150 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 155089 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 155028 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 154967 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 154906 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 154845 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 154784 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 154723 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 154662 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 154601 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 154540 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 154479 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 154418 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 154357 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 154296 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACATTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //