Array 1 7208-6171 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_VAIB01000012.1 Mannheimia haemolytica strain UGA-A5-128-1 NODE_12_length_70443_cov_203.031, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	================================	=====================================	==================
      7207	    32	  93.8	    36	C....................C..........	CCTATAACGAGCAATGGCATTTTGATCTACGGTAAA 	
      7139	    32	  93.8	    34	C....................C..........	TTCTTGAATACCTCCGGAGTCAGTTAAGATAAGG   	
      7073	    32	  93.8	    36	C....................C..........	CACCGCTGCTACTTCGGTTATCGGAGTAGTTTGCAC 	
      7005	    32	  93.8	    35	C....................C..........	GTGGCACAGTAACACGAGCAGATGCTGATAAACGC  	
      6938	    32	  93.8	    34	C....................C..........	CAGCAGCCGTTGTTACCGTGGTGCAATGCTTGCG   	
      6872	    32	  93.8	    36	C....................C..........	TACACTTATTGCCATAGGGTAGTAGTAATCTTTTAC 	
      6804	    32	  93.8	    34	C....................C..........	TGCGATTTTTGGATTTTTCGGGCGATAAATGATA   	
      6738	    32	  96.9	    34	C...............................	TCGTGGCTGGTTATACAAAGAAAAGCATTGTTGG   	
      6672	    32	 100.0	    35	................................	TTAAATCTAAAGCTAAAGCTATTTTATTAATTAAA  	
      6605	    32	 100.0	    34	................................	TTTACCGTTTACCGATTGGATTTTAATGCTAGAG   	
      6539	    32	 100.0	    35	................................	CCTAAATTGCCGTAAAAATCTGCCATTAGCTACGC  	
      6472	    32	 100.0	    35	................................	CTCATAACGAATCCAATCCTGTTCGGTTAATCCCC  	
      6405	    32	 100.0	    37	................................	AGGGGCGTGTACCGCAATCAATTTTAATTATAACCAA	
      6336	    32	 100.0	    35	................................	TTTATCTGTTGCGGTCAATTGTATATCTTGAATTT  	
      6269	    32	 100.0	    35	................................	CTCGTCTTGAATTGGAAAATCAAGGGCGACAATAG  	
      6202	    32	  93.8	     0	..........T............T........	|                                    	
==========	======	======	======	================================	=====================================	==================
        16	    32	  96.7	    35	GCAGCCACCTACGCGTGGCTGTGAATTGAAAC	                                     	       

# Left flank :   TGAGGAATTAGCAACTATGCTGATGTTGATTACCTACGACATTTCATTTGATGACCCCGAAGGGCAGGCTCGCCTACGCCGTATTGCTAAGCATTGTTTGGATTATGGTGTGCGGGCGCAATATTCTGTGTTTGAGTGTGATGTTACTCCTGCTCAGTGGGTAACATTGAAAAATAAATTATTGGCAACTTACAACCCAGACTGTGATAGTTTGCGCTTTTACCATTTAGGCAGTAAATGGAGGAATAAAGTTGAGCACCATGGCGCAAAACCTTCAGTGGATATTTTTAAAGATACGCTGATTTTATAAATCGCTAGCCTGTAGTTCTCATAAAAATGTAGCAAGGTTAGCGAATCTATATTGTTCTTTAATAATCAAGGAATTAGAAAAAATAAGGCACAATATATTGGCGATATGCTATACTTTATCCACTCTCTACAAAACGTTAGCGAATAAAGGGCTAAAAAGCCTGATATTTCAATACGTTATCTTATAGGGA
# Right flank :  GGTGTACCCACAAATCCTATGTTTTCGCCATTGGCTGCTACCTTCGCATCAATATATATTGAAATATCAATGGCAAATTTGTATGTTGTTAATTAGACTGATTGCATCTGCTATGTATCATAGTAATGACGAAAATATTCTATTTTGCAAAAAATAATCAGAAATTACCCGCTTGTTCGAACTGAGTTTTTGTTTTCTAAGATGTGAAATGATACACTTTAGATAGTTTTAAAATATAGAGACAGTAAGATGAGTAGTACGGAATTATTAGTGAATGTTACCCCAAGCGAAACAAGGGTAGCGTTGGTAGAAAACGGAATATTGAAAGAATTACATATTGAGCGGGAAGCTAAACGCGGGATTGTTGGTAATATTTATAAGGGAAGGGTGACAAGGGTATTACCAGGTATGCAATCTGCTTTTGTGGATATCGGCTTGGAGAAGGCTGCTTTTTTGCACGCTTCTGACATCGTTTCGCATACGGAATGTGTTGATGAAAA

# Questionable array : NO	 Score: 8.79
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GCAGCCACCTACGCGTGGCTGTGAATTGAAAC
# Alternate repeat :   CAGCCACCTACGCGTGGCTGCGAATTGAAAC

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         R Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     R [6,8] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GCAGCCACCTCCGCGTGGCTGTGAGTTGAAAC with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-1.30,-1.10] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [2-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,9.78   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
//