Array 1 418638-420132 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031505.1 Dickeya fangzhongdai strain LN1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 418638 29 93.1 32 ............AG............... TGAGGTATACCCGTCAGCCAGTTGGCGTTGCC 418699 29 93.1 32 ............AG............... CGTTGTCATGAATCTCTGGTGGTATTCGTCAC 418760 29 93.1 32 ............AG............... GGCAGACCCGCCAGCTGGCAGGACTCCGGGAT 418821 29 93.1 32 ............AG............... AGCTGCCGGAATTACAGCCGGACGGACACGGC 418882 29 93.1 32 ............AG............... CTAACCAGCGCATCAAACTGGTTCTGCGTCAG 418943 29 93.1 32 ............AG............... CGGTTTACCTGTTGCCGTACAGATACCGCTGT 419004 29 100.0 32 ............................. CATACGTTGATTCGGTTATTACCGGGGCTGTA 419065 29 100.0 32 ............................. TACGCCAAATACAATCCAGAGTACCAGCATGC 419126 29 100.0 33 ............................. TATGCTAGGTAGCTGGTACTCATGGCAATGAAC 419188 29 100.0 32 ............................. GGCCTTGCTGCGTACGCCCTCACCGAGGCTGT 419249 29 100.0 32 ............................. TGCGCTAGACACAGCACAGTAGCGGTACAGCG 419310 29 100.0 32 ............................. AGCGACCGCGCAGGCCGTAGCCACCTCTGCCC 419371 29 100.0 32 ............................. CCTTCTTTTGAACAACGCACGCATCAATCCTA 419432 29 100.0 32 ............................. CTCATCGCGGCCGACCAGGCTCGTCTGAAAAC 419493 29 100.0 32 ............................. CTGACCGGTATCAAGACGGAAAATCAGGAAAA 419554 29 100.0 32 ............................. GATTACGAACGGCACTTATTCCGAGCGGGTAA 419615 29 100.0 32 ............................. GATGCAGCAAGACAGATATATATTTCTTCCGA 419676 29 100.0 32 ............................. CTACTCCTGGCGAACTTCCTCTTCCTGTAACA 419737 29 100.0 32 ............................. CGTAACATCCTGACCAGCACCTTTATCCCGCA 419798 29 100.0 33 ............................. AGATTCACGAGCTTAACGGCAAAACTTACCTGC 419860 29 100.0 32 ............................. GTTGATGCCATCATTGCAGAAAACGTGTCGCT 419921 29 100.0 32 ............................. CACGTCAACAACGGGTTGTCTGTTCCACCGAT 419982 29 100.0 32 ............................. ACCGGGGCGCGGTGCGTTCAGTTTCTCAGCAT 420043 29 100.0 32 ............................. CGGGCGGCCTCTTTGCGCATCAGCTCAATGAT 420104 29 96.6 0 .........................C... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGATTGAAGACGTGCTGGCCGCCGGCGAGATCGCGCCGCCACAGGCACCGCCGGACGCGCAACCGCCGGCCATTCCCGAGCCGACGCCGTTTGGCGACGCCGGTCACCGGGGGCATGGCGGATGAGTATGCTGGTGGTGGTCACCGAGAATGTGCCGCCGCGCCTGCGCGGTCGGCTGGCGGTCTGGCTGCTGGAAGTGCGCGCCGGCGTATATGTGGGCGACACCTCGCGTCGGGTGCGGGAGATGATCTGGCAACAGGTGGTGGAACTGGCGGAGCAGGGCAACGTGGTGATGGCCTGGGCCACCAATACCGAATCCGGTTTCGAGTTCCAGACCTTCGGTGAAAACCGCCGGATGCCGGTGGACCTCGACGGACTGCGGTTAGTCTCATTTCACCCTGTTGAAAATCAATAGGTTAATGTTCTTTAACAACCGGGTAAAATCGGTGGAATTTTCCTGCCTTTAAAATGCCTTATAAAACAGGTATATACTTTTAGA # Right flank : GTTGATTAAGATAGCCTGATCGGCGGCCGGTTACGAAAAGCCACTACCCAGGTTTGGGTTAAAACGCGTGCCAGTCGTCCTCGCTGCCTGATGCCTTGCCCGAGGATGCCGCCGGTTTTAACGCCAGTGTTTTCGCGGCGGGTGGGGCTGAAAGCCGGGGTTTGTTGCCGGGTGCGCTATAAGCGCGGGGGCTGGTTTCTTCCTGATGGAAGATGCTGACCACCTGTTTTAACTGTTCGGCCTGCTGTTGCAAGGCTTGCGTGGCGGTGTTGCCTTCTCTGACCAGCGAGGCATTTTGCAAGGTGGTTTGCTCCATCTTATTGATCGCCATATTCACCTGTTCGATGCCAAGCGACTGCTCCTGACTGGCGACGCTGATTTCCCCCACCAACTCGCTCACTTTGCGCACGCCATCCACAATCCCCTGAATTGAGGCGCCGGCTTTTTCCACCAGTTGGTTCCCGGCGTCCACCGTTTGTACCGAATGACCGATAAGCTCT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGAGAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 768117-769184 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031505.1 Dickeya fangzhongdai strain LN1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 768117 29 100.0 32 ............................. CGTTACACCCGAACCACCGCCTGTACTGTGGC 768178 29 100.0 32 ............................. TTGGTGCCCGTAGAACCCACGGAGGAAATGGT 768239 29 100.0 32 ............................. ATGTTATTGCTCTTTTTGGTGATCCATCAACA 768300 29 100.0 32 ............................. GTTCGTCGAAAATTACGCTGACAGTTCTGGTC 768361 29 100.0 32 ............................. GTAGCTCAAGTGACCGAGGCTGTTCGTGAGAT 768422 29 100.0 33 ............................. CCTGAGATCGTCTTTACTCATCGCCCTGCAGGC 768484 29 100.0 32 ............................. GGGGTTAATTTGAATGAGGTAATTACATTAAT 768545 29 100.0 32 ............................. AATAATGAATAATCTTCGATCACTATTCATCA 768606 29 100.0 32 ............................. ATTCGGATGCCGTTGCCAGCATCCGAAAATGA 768667 29 100.0 32 ............................. TTCTGACAGGTTGAGCGCAACCATGTCACGCT 768728 29 100.0 32 ............................. GGACTGATAATGCCAGCGCAACAGAGCAGGAG 768789 29 100.0 33 ............................. TTCTGAACGTCAGTAGGTTTAATATTTTTATCC 768851 29 100.0 32 ............................. CTCATCGCTCAGCTTTTTCCAATGCTCTTCAG 768912 29 96.6 32 .............T............... ATGGCGACCAATCCAACGGTTGCATTAGCTCG 768973 29 100.0 32 ............................. CGTGCTGTGACGCTGAATCAGAATAAAGTTGT 769034 29 96.6 32 ..........................T.. ACTATAAACTGATGCTATAACTGGTGAAAAAT 769095 29 100.0 32 ............................. CTACCGCGATTTTCTGCGCCTTGAACTGATAC 769156 29 89.7 0 .............T...........G..T | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTCTGAACAGGGGCATAAAATCGGTAAGCGTCGGAGGCTGGTGCTGCACCAGCCTTTCTTTTTGCATTTTGCTTAGCTGTTTGACGCGATATTCCCATTTCAGCGCGGTGGAACGATCGCCCGCCACGCAGTGATACGCTAGCGTCAGCGGTCCTTTGCCGCGCAACGCGCGCGCTCCTTTCCCGGCCTGATGCTGCGCCAGCCGCCGCGTCACGTCGGTGGTGATGCCGGTATAAAGCAGCCCGCTGTCGGTGCGCAGCAGGTACAGAAACCATGTGGTCTCACTGTTTTTCACGTCATTTCCTTTTCGTGGGTCAGCGCTTATCTTACGGTGATATCTCGATAAAGGCTGCCTGTGCTGCCGTATTCGTCGGTGGCCGATGGTGGAAAAATTTGAGGCTTTTATTTATCAATAAGTTAGCGCTCTTTAACAACATAAAAAAGTTGGTGGAATTTTTCAGGTTTTAAAAGTCATTAAAAAACAAGTATATAGTTTTAGA # Right flank : TGCATTATCAGGCTTCATATAATTCGATACAGTGCTTACCTTCTTTGGTGTTACAATATTCACACAAATGATGATTTATGTGCATTTAATTTCTTTTTGATGTGAATAAAATCACATAACAGAGTGCGTTATCAGGGTGAAATGCCCGGAAACGCAATAGTGTGGCTGAGAGCGGGAGTGTTGTATGAGTGATTTGACTGCGGCGGCGCAACGCGCGCTGGGACTGATGGATTTAACCACCCTGAATGACGACGATACCGATGAGAAGGTGATCGCCCTGTGTCGTCAGGCTAACAGCCCGGCGGGAAAAACCGCCGCCATTTGTATTTACCCGCGTTTTGTGCCGCTGGCGCGCAAGGTGCTGCGCGAGCAGGGCACGCCGGATGTCCGCATCGCTACCGTGACCAATTTCCCGCACGGCAACGACGACATTGACATTGCGCTGGCGGAAACCAATGCGGCTATCGCTTACGGCGCCGACGACGTGGACGTGGTGTTCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 4064720-4065108 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031505.1 Dickeya fangzhongdai strain LN1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4064720 28 100.0 32 ............................ ACATAGTCATAGGCCCCGAACGCGGTTTCGCT 4064780 28 100.0 32 ............................ CATTCGATGATCTCAGTAAGTTGGGCGTTATG 4064840 28 100.0 32 ............................ GTTGCCCTCGGCCAGACCATTCGGCTCATTAA 4064900 28 100.0 32 ............................ TACGACACCAACATCTGGCCGGCGCCGATCAC 4064960 28 100.0 32 ............................ GCAAGCCCAGTGTGCCAGCCAGCAAAAAAGCC 4065020 28 100.0 32 ............................ CGACCACTTGGCACGATTGCCACGTGATTACA 4065080 28 75.0 0 ............AC.......A..TCCC | A [4065101] ========== ====== ====== ====== ============================ ================================ ================== 7 28 96.4 32 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : CGGAAATCCCACCCATAGCAATATCGCACTTGCCGGACTGAAAATCCGGCATCAGGGTTTTCCAGCTGGTTTTTATCCACTCTACTCTCACGCCCAGGCTTTTAGCCAGCGATTGCGCCATAGCGATATCGATCCCTTCGTAATCGCCATTGGCGCTCAGCGACGTGTACGGCTTATAGTCGCCGGTGGTGCACACCTTCAGCCCCCCTTGTTCCTGCACCTGATCGAGATGAGACGCGGCGCCGGCGCTGCCGGCCAGCCCCAGTAACAGAATGAATGAAAACCGTTTTTTCATGATAGTTCCTTGCAAGTCACGCCTGTCTGGCAAAAGCGTCACTGTAGCACGCCGCTTCCTCGCCCACCGATTTTGACCCTTTTTTTTCGCCCGTTTATAACTATCTGATTTTTAAAGATGATAACGATCGGCTTTAAAAAAGGGTTTTCAGACAAAAATCCTCGTTTCTCTTTTAAAATCAGCCCACCAGCGATAAATTGCTACG # Right flank : CGCTGATGCCGTTGCCCCGGCATCAGCGGATTCAGGTTTATTCAGCCACTAGTGCGCGAACCGCCCCTCTTTTCTTTTTGATGGCATAACCGGCGGCCAGCGCCAGCAGCCAGAACGGAATCAGCCACACGGAGATCTGGATGCCCGGCGTCATCGCCATGATCACCAGAATCCCGGCCAGAAACAGCAGGCACAGCACGTTGGTAAGCGGGTAGCCCAAACTTTTGAAGCGGGTTTGCTGTTGCGCGCGCTGTTTGGCCTGACGGAATTTCAGATGGGTGATGCTGATCATCGCCCAGTTGATCACCAGCGCCGACACCACCAGCGCCATCAGCAGTTCAAACGCCTTGCCCGGCATCAGGTAGTTGAGCAGCACGCACAGCGCCGTCGCCAGCGCCGAGACGCCGAGCGACACCAGCGGAATGCCGCGGCGATTGACCGTCAGCAGTGCGCGCGGCGCGTTACCTTGCTGCGCCAACCCAAACAGCATACGGCTGTTG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 4070621-4069871 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031505.1 Dickeya fangzhongdai strain LN1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4070620 28 96.4 32 ............G............... ACGACATGGATGCAACATACGCACAAAACGTA 4070560 28 96.4 33 ............G............... ACTGGGCTAAATTTTGTCTCCCCGATATTGTCA 4070499 28 96.4 32 ............G............... TACGTGCAGCACCGGACCCAGGTCAGCCAGGC 4070439 28 96.4 32 ............G............... GGAGTACACCCACGCACCGAACTGGTCCAGAA 4070379 28 100.0 32 ............................ GCATAGGATATTAGTCACATGAAAACCATCAA 4070319 28 100.0 32 ............................ GCCGCCGGCGTGGTCGGTGCGGCGCTGCCGGA 4070259 28 100.0 32 ............................ GCCGCCGGCGTGGTCGGTGCGGCGCTGCCGGA 4070199 28 100.0 32 ............................ CAATCCTCAACTTCGCGTTTTAACTCCCTGAT 4070139 28 100.0 32 ............................ ACTCAGGATAAGCCATGACGCTTTGTCTTATT 4070079 28 100.0 32 ............................ AACATCCATCGGGATGATCGCTGCAGCGAATC 4070019 28 96.4 32 ............G............... TTGTTGTGCGGGCTGCGTTGTTGAGGCCGCCA 4069959 28 96.4 32 ............G............... AGTCAGGAGTTACACAAAACTGTTCTGAAAGG 4069899 27 82.1 0 ....T........C.........-..CG | GG [4069876] ========== ====== ====== ====== ============================ ================================= ================== 13 28 97.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGGAACTGGCGGCGCTGGAGCAAACCGGCTGGCTGAAAGGGCTGCGCGACTATACCGCCATTACCGAGCCGCTACCGGTGCCGGCGGGGGCGAAGCACCGCATCGTGCGCCGGGTGCAGGTGAAAAGCAGCGCTGAGCGACTGCGCCGCCGGGCGGTGAACAAAGGCCGGATGACTGAGGATGAAGCCGCTGCCCGCATTCCCTATGCGGTGGAAAAACGCACCTCGCTGCCGTATCTGCCGCTGCGCAGCCTCTCCAACGGACAAGCGTTTTTACTGTTTGTCGAGCACGGCCCGTTGCAGGACAAACCGGTCGCCGGAGCGTTCTCCAGTTACGGGTTAAGCGCCGCCGCCACCATCCCGTGGTTTTGACCCTTTTTTTGCGGCCAGAGCTAACGTATTGATTTTAAATACCGAAATCTGGCCGCCAGAAAAAAGGTTTTTTTCGTCAAAATAGCGTTTTTTCTTTAATAATCAGGTGATAAGCGATAATTCACTACA # Right flank : GGGTTTCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGGTGAGCCGCACGGACGCGGCGAAAGCCTGTGCCGTGCTGGGAGCACGTCACAGGCGGCCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTAGCGGCGTAGTTTAGCCTCCAGCCAGTGGTCAAGGAGAGGCGGCGTTTGAGCCTATCCTTGTCGTGCGTGCGATGATGTGGCAAAGAAGCGACACGGTTTATCCCGCACGAAATGACTCGCTACCCCGGCATATATTCACCAGTAACTCAAACTCCCGCTGTTTTTCAACAGCCCCATTCCCGCACAGGAATAAAAAAATCCCCCACCCGTTACCGGCTGGGGGAAAAGGCGTAAAAAAGTGAAAGGAATAACTTACTGTACGGCAGCGAAGGCGGCAGCCACGCGCTGCACGTTGTGATGGTTTAAACCGGCGATGCAGATACGGCCGCTGGCGATAAGGTACACGCCGAACTCTTCGCG # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 4079174-4080104 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031505.1 Dickeya fangzhongdai strain LN1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4079174 28 100.0 32 ............................ TGGAAGATATCCGCGCCGCCTTACAACAGGCA 4079234 28 100.0 32 ............................ TGGAAGATATCCGCGCCGCCTTACAACAGGCA 4079294 28 100.0 32 ............................ AAAGGTAGCACCGAGCACGCCATAAAGACGGA 4079354 28 100.0 32 ............................ GAATTCCCTGATACAATATCAACCTTATTATT 4079414 28 100.0 32 ............................ ACCCAGCGCCATTGATGCCCCGCCCATGATCA 4079474 28 100.0 32 ............................ GCTGATACGCTGATCCGCCGAGAAATCCCGGA 4079534 28 100.0 33 ............................ GAAAGAAATTACCCCCGAAGTCAGTAACTACAT 4079595 28 100.0 32 ............................ GTATTCAACAAACCGGGTGGCGGTCTGGTCTA 4079655 28 100.0 33 ............................ AGCGGCTTGAATCCGCATTTCGGGCAAATGTAA 4079716 28 100.0 32 ............................ GTTCTTGAAATGGATGCATCGACACAGAGGGC 4079776 28 96.4 32 ........T................... ATTGCGATGATTTTCACCAGGTTGCTATCCCC 4079836 28 100.0 32 ............................ TATGCCGCACAAAGACAAAGGCCATGCTGGTA 4079896 28 100.0 32 ............................ TTGCCATCAGCAATCTGGTCGGCAGTGTTCAA 4079956 28 100.0 32 ............................ TGACTGAAGAAGCCACCATACCAGAGCAGACA 4080016 28 92.9 32 ...........GA............... TCTTACCCTCATTCAGTGGTTTCATTCATGCC 4080076 27 82.1 0 ....................A..G.CG- | GG [4080097] Deletion [4080103] ========== ====== ====== ====== ============================ ================================= ================== 16 28 98.2 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : CGTCACCGAGGTGCCGGTGCCGAGCATCACCACGCTGGTATTGGCGATAGGGATATTCCAGTACAGCGACTGATTTCCTTCTTCAGTGACATATTCCACCCGTCCGCCATTCACCAAAATACGGCAATGCTGGAGGTAATAAATATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGACGGGCTGAATACGTTATCCATAAAACAGACTCTCTGCCGCAGTGATAGACAAACACCACCCGCGTAATAAAACGCAGGCTAATAATGAATTAGAAAACACGTAATCTACTGGAAAGTAACGAAAATCAGCCTAGCACAGCCCAAACGGGAAAGTGAATGACGCCAGAAACACTTTTCCCGCTTCGATACCCTTTTTTCAGCCGCCTTTTTCGGCATTGAAAAATCAATAAGTTACCGAGGGCCGAAAAAAAAGGGTCTGACGGCGAAAATCGCCAATTGTGGGCCGAGATACAAAGGGTTAGAGTCAACGAGCTACA # Right flank : GGGGTTGCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGGTGAGCCGCACGGACGCGGCGAAAGCCTGTGCCGTGCTGGGAGCACGTCACAGGCGGCCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTAGCGGCGTAGTTTAGCCTCCAGCCAGTGGTCAAGGAGAGGCGGCGTTTGAGCCTATCCTTGTCGTGCGTGCGATGATGTAGCAAAGAAACGACTCTGTTTATCACGCACGAAACCCTTCACAGCACCGACATGTTCTCTCTATCCTCATCCGGCAGTATTCCCTCCCCCACTCGGGGAGGGAAATATCACTCAGAACGACGTCCAGTCGTCATTGCTACCAGCGGTGGCGGCGGCACGTTTTTCAGTCGCAACCGGGCGAACGGAAGCGGCAGACGGCAGCGCGTGGGATAGCGCCGCCGTCCGACGGGCCGGCGACGGCGCTCCGTTGCTGCCCTGCGGCGTCAGGCGGAACGCGCTGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //