Array 1 106577-104716 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQSD01000006.1 Salmonella enterica subsp. enterica serovar Derby strain SC968 NODE_6_length_270069_cov_152.655381, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 106576 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 106515 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 106453 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 106392 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 106331 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 106270 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 106209 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 106148 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 106087 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 106026 29 100.0 32 ............................. TTTGTATTTAAACAATAAGGCGAATTATGAAA 105965 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 105904 29 100.0 32 ............................. AGACGATGGCGGAGGCGCAGAAATCTAACCTG 105843 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 105782 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 105721 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 105660 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 105599 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 105538 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 105477 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 105416 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 105355 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 105294 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 105233 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 105172 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 105111 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 105050 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 104989 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 104928 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 104867 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 104806 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 104745 29 93.1 0 A...........T................ | A [104718] ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 124038-123217 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQSD01000006.1 Salmonella enterica subsp. enterica serovar Derby strain SC968 NODE_6_length_270069_cov_152.655381, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 124037 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 123976 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 123915 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 123854 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 123793 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 123732 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 123671 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 123610 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 123549 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 123488 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 123427 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 123366 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 123305 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 123244 28 79.3 0 ...........C...A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //