Array 1 319806-320962 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JADPBL010000002.1 Streptococcus mutans strain D40t1_170626_E1 NODE_2_length_344045_cov_29.785, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    319806	    36	 100.0	    30	....................................	GTCGCAAATGCTAGCCAATGGCAAGGTCCA	
    319872	    36	 100.0	    30	....................................	TAGCATTTAGCGCTTGCTAAGCGTGTAAGG	
    319938	    36	 100.0	    30	....................................	GCTAACGCTTATCAGCTGTTTCACTGGTCT	
    320004	    36	 100.0	    30	....................................	AGATAATGAAAATCAATTCAATGCACCGCG	
    320070	    36	 100.0	    30	....................................	CAATTTCTGGTTTTAACAAGTCGTAACCCC	
    320136	    36	 100.0	    30	....................................	CGGCTTCGTCGGCAGTGCGTTAAAAGGCGT	
    320202	    36	 100.0	    30	....................................	CCGTTTAAATAAATGTTCTTGCGCCCGAAT	
    320268	    36	 100.0	    30	....................................	CGTGAGTCGCAACGAAAAGCGCAAAAAAGA	
    320334	    36	 100.0	    29	....................................	ACGTGATTACAAGCGCATAGAGCCGTTAA 	
    320399	    36	 100.0	    30	....................................	CATAGCGTATGATTTGACGCATAATTATGT	
    320465	    36	 100.0	    30	....................................	TTTTCTTCTTCTTACCATCCTTAACTTCTT	
    320531	    36	 100.0	    30	....................................	GAGAGATAGAGAAAAACAGGATACAGCAAC	
    320597	    36	 100.0	    30	....................................	CAGTCACAGCGCGTGTGCTTGAGCCGATAT	
    320663	    36	 100.0	    30	....................................	ATTTCTGCTAACGCTTATCACTTGTTTTAC	
    320729	    36	 100.0	    30	....................................	TATAGCTAATATGTGTATACTGACAGCGCA	
    320795	    36	 100.0	    30	....................................	TAAAAAGACTACACAAGAATTAATTGATAT	
    320861	    36	 100.0	    30	....................................	GTCACGAGCTACTCTGTCTAAATAGTTTGG	
    320927	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        18	    36	 100.0	    30	GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	                              	       

# Left flank :   GGAAGAGGAAGGATATTGGGTTGAATTTCCTGAATTTGGCGGTGGTACGCAAGGGGAAGATTTGGAAGAAGCCATGAAGAACGCTCGTCAGATGTTAGAAAGTGTGTTGGCATCTTATCTTGATGAAGGGTTGGTTCTACCCATTTCAAGCGATATTCAGAAAATATCTGTTGAAGATGGTTTTGCGACCATGATTCAAGCTGATCCTAGTCCTTATCTCAAAAATAACAAAGCTATTCGGAAAAATGTTACCGTGCCTGAGTGGTTGATACGATTAGCAGACCGTGACCGAGTAAATTATTCTGAAGTATTAACAAAGGCTTTGGAAAAGAAACTACAATTATAAAACAATAAAATCGCTAGAAAGATTGATTTCTAGCGATTTTTTAGGTATAATATAAGCAATCAAAACCTTTTAAAAAAGAATCATTTTGAAGCTGAAATCTGGCTGAGATGAATGGCGCGATTACGAAATGTCGAGACAAAAATTGGTCCACGAG
# Right flank :  CATGTGAAAAGAAAGTAACTACTACATTTGAGTTTTAGAGCCATGTTAGTTACTGATTTACTAAAATGCATTATGCGAAAGATTTTTAAATAAGCAAAAGACACTTGAAGCAATAATTCAAGTGTCTTTTATGGGACTTTCTTTAATTTTTAGGTAATGACCGTTCCGATGACTTCAATTGTATCATCTTCTTTTAAAATGATGTCATCATAATCTGGATTTAATGAGATGAGTCGAATTTCTTTGTTTTTTCGGTAGAGTTTTTTGACATATGCCTCATTATTTACAATAACAACGATAATTTGTCCGTGATGGATAGCTTTAGTCTTTTTAACAAAAATAACGTCACCGTTGTAAAATAAAGGTTCCATACTATTACCATTGACAATAAGAGCAATATCATGTTCTGGAATTGGTATTGGGTATTTAATGGTTTCTTGTTTTTCATGTCCAACCCAGATACCAGTACCAGCTGAAACTTCACCATAAATCTGAATGTT

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:61.11%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-4.70,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.87,0.27   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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