Array 1 36127-35293 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMPA010000037.1 [Clostridium] symbiosum strain 1001270B_150601_E4 NODE_37_length_47131_cov_38.4001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 36126 33 100.0 35 ................................. CAGATACCGCCTGTAGATGCTGATGAGCATGTTGT 36058 33 100.0 34 ................................. AAATACTTACCTATATCGAAATCTGCACAGCGTA 35991 33 100.0 33 ................................. CTTTGGTTTGAAGAACATTTTAATTACTATCCC 35925 33 100.0 34 ................................. ATCCGTCCCAATAGAATATCGGCCAGTTTCAGCC 35858 33 100.0 33 ................................. CGAATGCCGTCAAACTGATACGCGCCCATCGGC 35792 33 100.0 34 ................................. TTCGGCACGTCGTAGAGGACGGTTCCGTTATCCT 35725 33 100.0 35 ................................. CATAACTCAGACGTCCGAGACAAGGGCAAAACAAA 35657 33 100.0 34 ................................. AAAAAAGTCCTTTCCTTCAGCTAATGAACTTCTA 35590 33 100.0 34 ................................. ATTTTCCTTCATGGCAATTTCACTCTGGGCATTT 35523 33 100.0 33 ................................. GATGCAATGAAAAAATATGGCGGCAGCCGGATG 35457 33 100.0 33 ................................. TTACTCAGTTCCCCCTGATTGACGCTACATAGA 35391 33 100.0 33 ................................. GTCGTCGGCCGTTCCCGGAAGGCCGTCAGCTCC 35325 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 13 33 100.0 34 GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT # Left flank : TTGCTGGAATTGTTCCAATGGAAATCAAGTGAGGAAGCGGTAGTAAATAATCTGGATAGAATGAAGGATGAAATTGCTGATATCTTTATATATCTGCTTATGCTTTCGGATGATTTGGGGTTAGATCTTTTCAGTGCGGTTACTGAAAAAATGAATAAAAACAACGGAAAATATCCAAAAGAGTTATGCAAGGGGAAGCGTGATAAGTATACAGCCTATTTAGAGTGAAAATTAAACATAATATTTCATTATTACATTGCTTGTTTGAAAACTGTAGGGTTGACTATGGGTTGATTTGATGGGTATTGATCTTTAGTAAGAAGAACCAAGTGCGAATAGTAGTTGTACATAAAATCCCAGGGAGATTCGCACTACAATTGGCCGGAAAATACTATTAAATTACGCGAGGAAATTTCAACTTGATAAACGATTTGTAGAAGATGTATAATATGAAGCATGTAAATGTGGCATAGATGCAAGAATAATTGTGCATTTTTGCC # Right flank : TTTATAGGTGGAATAACTTTTTTATAGACCTTGTAAATAAAATCGCTTAATTTAGATTTGCTTCACTTAGTCTGTTCGATGACGCTATCAAAGCCATATCAATTCCCCCTCCAAAACTAATTCAAAATAATGATTGACTTTTTAAACTGTAACAATTATACTTACAGTAAAGAGAGCAGAACATACATTTCCCAATAATAATAATATAACTAACACATAAAGAAGTATCAGAACCCACTTATCCATCAATAATATATACATCATTTAAAGGGAAATCCCATCTAATAATTGCAATACCACATTATTTATGAAGATAAATAATCGAAGGCCATAATAAAGATATGCTCAGGAAAGAAGGTATATAAAAATGGTAGCAAACTTAAAATCCAACACAGAACCTAATCCGAAACCAGACGATAGCCAAAACTCGGAGATAAGCAAAAATACGAATAATGATATCATACCCACTCAAAAAACTAACATAGAAAACACGACAAAAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.00,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 37109-36874 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMPA010000037.1 [Clostridium] symbiosum strain 1001270B_150601_E4 NODE_37_length_47131_cov_38.4001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 37108 33 100.0 35 ................................. TTTCATTTCTTCGGCCCGATGTCGGTCCATGTTGC 37040 33 100.0 34 ................................. CAGTTGATTAGCAGTGATATTATGCTTTTTGCAC 36973 33 93.9 34 ......A.....................A.... GTTCCAATATCCGGATATGATTTTCCGGCAACTG 36906 33 93.9 0 ..............C..T............... | ========== ====== ====== ====== ================================= =================================== ================== 4 33 96.9 35 GTCGAGGCTCGTGAGAGCCTTGTGGATTGAAAT # Left flank : ACAAGAAACTTGAGGCTTATTTTAAAAGTAAAATGAAAGCGTAATAAGAGAAGCTGATATTTGGAGATTGGATTTTATCTTAAGCGGCTTTAAATTAGTGTGAAGCGCGGAATTATAATCTGTTATATACTTTGTTCATATAAAAAATATAAACATTTATGTAAATACATTTGAATTCTTCGAGCGTGACAAAACATAATAAACTGCTGGGTACACTGTTAACTGCGACCGCCATTTTAAATGATTGTTTAGGATTGTACGGGAAAATTTAGCACATATGGATAATGGAGGTAATTTAAAAGAGGGTTGATTTTTAGTAAGGAAACTCTGGTGCGAATAATAGTTGCACATAAAATTCCAGGGGGATTCGCACTGCAAACGGCCGGAAAATAGGATTAAAATACGAGAAAATTTTTTGACTTGCTGGATGATTTGTTGAAGGTGTATAATTAAGATATATAAATTTGGCATGGATGCAAGGATAATTGTGTATTTTTGCT # Right flank : TCAACGACTGGAAGTTGGAAGCACTTATGTCGACTATACATCTTTACTACTCACCTCGAAATACTCTATAATTCCCAGTGTTACAAAGAAAATATATTTAAAAGGGAAGGGGAAAGCTTCTATGGCAAAAGATATTAATATTCAGGATTTAATAAACAAGATAAATAAATTTAGAGAGGAAAGAGACTGGAGAAAGTTTCACAATCCTAAGGATTTATCAATCTCCATTTCACTTGAAGCATCAGAATTGCTGGAATTGTTCCAATGGAAATCAAGTGAGGAAGCGGTAGTAAATAATCTGGATAGAATGAAGGATGAAATTGCTGATATCTTTATATATCTGCTTATGCTTTCGGATGATTTGGGGTTAGATCTTTTCAGTGCGGTTACTGAAAAAATGAATAAAAACAACGGAAAATATCCAAAAGAGTTATGCAAGGGGAAGCGTGATAAGTATACAGCCTATTTAGAGTGAAAATTAAACATAATATTTCATTATT # Questionable array : NO Score: 8.71 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTCGTGAGAGCCTTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGAGGCTCGTGAGAGCCTTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.00,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 149485-155456 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMPA010000001.1 [Clostridium] symbiosum strain 1001270B_150601_E4 NODE_1_length_230713_cov_37.3874, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 149485 32 100.0 33 ................................ GATATGGATTCCCGGCAGCCCCACTACATCGGC 149550 32 100.0 32 ................................ GTCCCGTAATCAGATGGACAACAGCAATCAAT 149614 32 100.0 32 ................................ ATCATTCAGATACAGCATTTCCTGCAGCTGGC 149678 32 100.0 33 ................................ TTCCCCGGAGGCAGCCGCCAGATACATGATGCC 149743 32 100.0 33 ................................ CGGCCAGGCCAGCAGAAGCAGCCGCGGCCCCTT 149808 32 100.0 33 ................................ CGCATACCCCTTTAGCCGTTTCTCCTGACCGTC 149873 32 100.0 35 ................................ GATGGTATAGCCAAAAGAACCAGCCACCGGAGCCA 149940 32 100.0 34 ................................ GTCAAACAGCCCCATCTCCGATATTTCCTTACCC 150006 32 100.0 33 ................................ GTCCTGAATCACTGCCTTCATCCTTTTTTCACA 150071 32 100.0 34 ................................ CTTAAATGTCAATTTAACGGATTAAATGGTTCGT 150137 32 100.0 33 ................................ CTTCTAGGTTTGATATAGTTATCTTCATCCGAC 150202 32 100.0 34 ................................ AGTCATAGAGTCATTGACAGTAGCCGCCAGGGCG 150268 32 100.0 34 ................................ CCCTTTGGAAAGGCACCTGTCGTGAGATGGGTGC 150334 32 100.0 34 ................................ ATAACTTAAGTAATCAGCCGTATAGAGTGCTTTT 150400 32 100.0 35 ................................ CGTGTTCAAACGAAAAGGTATCCCATAACCAGTCT 150467 32 100.0 33 ................................ AGTTGGGTGCTGCAAGGTATCAATTTTCCCGGC 150532 32 100.0 36 ................................ GGAATAGGCAGCCAGAATTTCTCTTGCCTGCTGCCA 150600 32 100.0 33 ................................ TTGCTTTAACTCTGCGTCCAGTTCTTTGTTCCC 150665 32 100.0 34 ................................ GATCACGCCATAGTCTACTGTCATATCGCCACAG 150731 32 100.0 34 ................................ TGTCCGCCTTCGCTAGCCATTAGCCCTAGGAATG 150797 32 100.0 35 ................................ TGGATTGTATTGGACGCATGTGTAGTACCGGTATG 150864 32 100.0 34 ................................ CATGATGTAATTGAAAATCTCCATTTGGGATTCC 150930 32 100.0 34 ................................ GATTTCCGACATTGTAGTAGCGTGGCTGGTTTTA 150996 32 100.0 33 ................................ TATGCGTGCTTGTCTACCTTTAACTGCTTGTAC 151061 32 100.0 34 ................................ TTCCGGTTCCGCAGTTCTTTCTATCGTCTTCTCT 151127 32 100.0 34 ................................ ATCCGGGAGGCGCGTTCCAGAGGCAGTATGGAAC 151193 32 100.0 34 ................................ CATAATCGTTTTTAAATGCGCCAAACGGCTGGAC 151259 32 100.0 36 ................................ AGCATCCATACCAAAGCGTGCGCATAAACCAGTAAT 151327 32 100.0 34 ................................ AATTATTCTGAAATGACCGAAGCCCTGCGTGACT 151393 32 100.0 34 ................................ ATCCCAGACTGCTTTTAAGCCATCCCAGAGTTTA 151459 32 100.0 35 ................................ AGGTCTACGCCAATGCCGGCGCCGGGACCTACGAG 151526 32 100.0 35 ................................ CCACTCCCGGAAAAGGTTAATCCAATCATCCAGGC 151593 32 100.0 34 ................................ CATATGTTCCTCCTAAATCGCAGGGAGAATCAGA 151659 32 100.0 34 ................................ CATGCATTCATCGGAGTGATCCAGAATCTCCACA 151725 32 100.0 33 ................................ TTTCGCTGCTTCCGAAACATCTTTCATGGTCAG 151790 32 100.0 35 ................................ ATTACACCCCATTTACTAATCAGCTGTCGAAGCAT 151857 32 100.0 35 ................................ ATAACGTTCCAGATGCCAGCTTCTGGCACCCCGGA 151924 32 100.0 33 ................................ CTTCCTGCTACTTAAATACTTTGGCTTCTTTTA 151989 32 100.0 34 ................................ TTTCTATTTTCGTTTATGTTTATGTCTTTTAATG 152055 32 100.0 32 ................................ CTTAATCCACAAATTTATTTCGGCCACGCTTG 152119 32 100.0 35 ................................ CGGAGGCGGAGCGTCAGTAGCGGCGGCCGGTATGG 152186 32 100.0 35 ................................ ACTGATTTTATGTTCTGCCGTTACCTGGCCCGCAT 152253 32 100.0 35 ................................ CCGGCCTATCAGGGATAGAAAGACAGGGAAGCGAT 152320 32 100.0 33 ................................ ATAGACACCATCAAAGCTACCGTTTTACAGGTC 152385 32 100.0 34 ................................ TTCCTTCTCTCCTGGTCCACCTGTTATCATAGCC 152451 32 100.0 33 ................................ TCCAGAGCCATTGTGGAATCCAGCTGGAATAGT 152516 32 100.0 35 ................................ TTAGGGGAAAGACAGTGCAGGAATCTATCCGCGAG 152583 32 100.0 33 ................................ ATTAGGTAAATCATATCTTCCGACATTAGCTGG 152648 32 100.0 34 ................................ AATGAAGCTCTGTTTGATTTCGTATCCAAAATAC 152714 32 100.0 34 ................................ GCATTGTTAGTTGCATAAATGAAGTTGTAAGGAT 152780 32 100.0 34 ................................ AACTGCCTTTATAGCCTCCTGCGGTATCTGCCCG 152846 32 100.0 34 ................................ GCCGTTCAAACAACTTCGTTACCGGGTTGAATTT 152912 32 100.0 35 ................................ CCTTTGTGGTGTACCTATACCCCGGAACCAACAAT 152979 32 100.0 34 ................................ ATCTCTGACATGTTCGATAACCGGCAAATGACCG 153045 32 100.0 34 ................................ GTCACCGTCAAATTCAAAAAGGAGGGCGAAGGCT 153111 32 100.0 35 ................................ ATCCGGAATCGAACCGGAACCCATGGCGCGACCCT 153178 32 100.0 34 ................................ TACCTGCCGTTCGGCATCTTTAAGGGCATTCAGC 153244 32 100.0 35 ................................ GGACGTGGTAGACGAAATGAAGGCCGAAGCAAAGG 153311 32 100.0 34 ................................ GCGAAGTATTCGATATCAGCAAGGCAGTTTGTTC 153377 32 100.0 33 ................................ AGTCTTATCCCATGTATCTTTATCTTCTATAAT 153442 32 100.0 34 ................................ CCTTGTATAGAAGTGCGTCAGTATCTTTGTTTCA 153508 32 100.0 34 ................................ AGGGAAGACACAAAGTTTTTAAGAGGTGATGGCT 153574 32 100.0 35 ................................ ATGGTTAAGGTTAGATGCACAGCATGTGTAGGACG 153641 32 100.0 35 ................................ GTTTTGGCCTTAATGCGGCCATCCGGAAGAGGAGT 153708 32 100.0 35 ................................ AGTTAAGCGAATAGGAGAAAGTTTTGGAACGAAGC 153775 32 100.0 35 ................................ ATCAATAATTAACATATCAATATTCAGAAAAGTTT 153842 32 100.0 34 ................................ GGCGGATGTAAAGAAGCGTTCGCGGTATTTCTGC 153908 32 100.0 33 ................................ CGCATTCCCGGCCATCATGGATCAGACCATCCG 153973 32 100.0 35 ................................ CTAAGTTACAATTGCGAATTCTTCCGCATATAAAG 154040 32 100.0 34 ................................ AATTAATCCAACATATAAGTCAACTGAATTTTCT 154106 32 100.0 33 ................................ CCCGTCAATCCCGGAGAAGACCATCCAAGAGCC 154171 32 100.0 35 ................................ CGCGAACAGCAATGCTTAGCTGCGTATAGCCAACC 154238 32 100.0 34 ................................ CGTTTCCCGGATTATGAACAAACTCTATCCCCAC 154304 32 100.0 33 ................................ GGTTCTGCGAGCCTTTAAACGGAATGTTATCGG 154369 32 100.0 34 ................................ CTGGGCATACTTATCGGGTATCCGCAGCAAAGCC 154435 32 100.0 33 ................................ TTTGGTCAGGACTATGGCCGACTGCACAGTGGC 154500 32 100.0 36 ................................ CTAGTTGCTTCAGGAAAGCAGCGTCGTCATCGCCTA 154568 32 100.0 33 ................................ TGATTCTTCCCGGCATACGGATTGTGAATATAT 154633 32 100.0 34 ................................ ATACTACTATATGTTCCAAATTGGTCGAGTTGTA 154699 32 100.0 35 ................................ CTAGCCGGTCTTGCACCGGAAACAGCCCTGGGGCG 154766 32 100.0 33 ................................ TGTAGTGGGTTTCATTCCCTGCAGCAACATATT 154831 32 100.0 35 ................................ AGCCAGGAAGAGGCAGAACAGGCAATGACAGCGTT 154898 32 100.0 33 ................................ TGCAGTGGAAGTTTCTGGACGCCGCAACCTGGT 154963 32 100.0 34 ................................ CTGTTTGACAGGTCAATGCTATCCCGGTTAAGCT 155029 32 100.0 34 ................................ ATTTTCTTCATAAATAACTTCATTTCGTAATATG 155095 32 100.0 33 ................................ TTGGCTTTGTAATGTATAGGAAAGTGATTCAAG 155160 32 100.0 35 ................................ CATCAGGTTCTTCGGCTTCTCCCTGATGGCGTAGG 155227 32 100.0 34 ................................ GTCAATCAATTCCCCATCCAGTGAAGCATGCATC 155293 32 100.0 34 ................................ CATCAGGTTCTTCGGCTTCTCCCTGATGGCGTAG 155359 32 100.0 34 ................................ ACGTACAAGGGGCCGTTGACAAGTTTAATCAGAT 155425 32 87.5 0 ..........................T..GGT | ========== ====== ====== ====== ================================ ==================================== ================== 91 32 99.9 34 GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Left flank : GAAATGAGGTGATGGATTTGCTTGTTCTTATAACCTATGATATTAACATTACAGAAGCCGCAGGGGCCCGCCGTTTAAGGCGCGTAGCCAAGCAATGCGTAAATTATGGCACACGGGTACAGAACTCTGTTTTTGAATGTCAGGTGGATGCAACGCAATATGTGAAGCTAAAACATCTTCTGATGAAAGAAATTGACGAAGAAAAAGACAGTCTGCGTTTTTACTCTCTAGGTAATCATTATAGCGGTAAGGTTGAGCATTTTGGCGTGCGGCGCGGGATACAGGTGGATGAACCTTTAATTTTATAAAAGAACCGCAGGGAAGATGTCTTGCCTTATCAGTGCGAACCCGAAGTGAACATGAATTCTGTGGGAGGTTCGCACCTGGATTTTGGTGTAAATTGGCGGGGATTCTGGTTTAGAGATAAAATTAAATATCATATTTGGATGATTTGAATAAAAAGTAATGTAAAAAATACTCTAAAACCATGAATTTTTGCT # Right flank : TTTTATTGGCGCAAAGAGGTGTGGATTCCGGGGATAAGAGATCGGCAGATGAAATCTGTCAGCAGGAACTGAAGAATGCTGTCTGCATCACACTTAAGGAAAAGGGGGCTCAGGAAAAGGGGAGTCTTATGAAAAATGTGATCCGGACGATGGGGTATGTCCGAAGCAGTACTTCCTTAGTGGAGGCTGCTGAAAAGGGGATGAAGTATGGAAGGAAGACAGGGGAGATTGTGCAGGATGAAGAGAAGCAGTTTAGGCTGGGAAATTGACAATCTTGCTAAACTGAAAAGTGCAGTTCGCTAAGGAAGAATGATACCCGGTGTCAGAAAATAGTTTGGAGAAACTGAGTAACAACAGCAAAAACAATCATTCATAGCGATTAAATCACCAGAAGAATTTACCTGCACATTAGGAAATGATTAATAAATTCTTTAGCATTCAATAATACAATAATTCAAAAGATTTATTATAATGTTAGAGGAGATAAAAATCATGGAACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //