Array 1 87029-87449 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JADEVR010000001.1 Salmonella enterica subsp. enterica serovar Typhi strain OM1902 NODE_10_length_177554_cov_10.984594, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
     87029	    26	  89.7	     0	..........................---	-                               	Deletion [87055]
     87055	    29	  89.7	    32	CC.A.........................	ATCCCCGCGGAGGTTGCGCAACCGGTGTTTTA	
     87116	    29	  96.6	    32	...........A.................	TAAAACTATAACCAACATTAATCTTTTTTAAT	
     87177	    29	 100.0	    32	.............................	CGCGCCAAAGAGGGCGACGTAAAGGCGTATCT	
     87238	    29	 100.0	    32	.............................	GCGGTAAAAATCACGGTCGGCATACATCGTGG	
     87299	    29	 100.0	    32	.............................	CAATTCACGCGGCGGCGATTGGCGATTCGCGT	
     87360	    29	 100.0	    32	.............................	ATCTGTCTGATATCCGACACGGGTTGCTGTCC	
     87421	    29	  93.1	     0	...........................AC	|                               	
==========	======	======	======	=============================	================================	==================
         8	    29	  96.1	    28	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACACCCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA
# Right flank :  CGTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACACGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCCCCAACAATCAGGTTATTGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTC

# Questionable array : NO	 Score: 5.59
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.44, 8:1, 9:0.98,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [5,4] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-13.50,-12.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [5-2] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.51,0.41   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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