Array 1 970398-975051 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030094.1 Prevotella intermedia strain KCOM 2734 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 970398 47 100.0 29 ............................................... ATAGGCTCTTGGCTTGTGTTAGTTGAGCG 970474 47 100.0 30 ............................................... TCTCGTAACACCGCCCCTGCATAGGTGGGA 970551 47 100.0 30 ............................................... ATTGTTCATATAGGCTGACGGCACCATTGT 970628 47 100.0 30 ............................................... ACAGTTAAATTCATTGACAACGCAACGAGT 970705 47 100.0 30 ............................................... TAAATGTCTTGAATAGCTTACCTTTTTTAT 970782 47 100.0 30 ............................................... TTTCCACATTTTGTAGAGAGTATGGGTAGG 970859 47 100.0 30 ............................................... TTAAAGGAAATGCTTATTGTTTCATCGAAA 970936 47 100.0 30 ............................................... TGCAGCATTTGAGTGTAGCATAGAAGAAAT 971013 47 100.0 29 ............................................... TTATGGAGCAGACGTTAATTAAAAAAAAT 971089 47 100.0 30 ............................................... AAAGGTCAATTTTATATTTAAACATTAAAA 971166 47 100.0 30 ............................................... ACCCTTTGCCCGTTTTGTTACTTACTGCAA 971243 47 100.0 30 ............................................... CGACCTTAGAGAGTGCCCAAAAATATGCTA 971320 47 100.0 30 ............................................... TCCCATTAACGACACGTGTCAGACGCTGTG 971397 47 100.0 29 ............................................... GAGGCAGTTGTTGAGTGGTGCGAGAAAGA 971473 47 100.0 30 ............................................... TAGCATAGTGGTCTTTCCATTGCCCATTGC 971550 47 100.0 30 ............................................... TACCATTCGCCGAATGCCTGCACGTGTCAA 971627 47 100.0 30 ............................................... CTATCTGTACGACAGCAACGGCGCACTGAA 971704 47 100.0 30 ............................................... ACCGTCTGACGATAAAGTGTCCGAAGTACT 971781 47 100.0 29 ............................................... TCGTTGGTTCAATTTCAGACACTTAGACG 971857 47 100.0 30 ............................................... GAGTTTTACCCACACGCCGTTGCGTAGCTG 971934 47 100.0 30 ............................................... AGAATGATAAGTTACAGCGTGATAAAGAAG 972011 47 100.0 30 ............................................... CTTGTTGGTTTTACAGCTATTTATCCTAAT 972088 47 100.0 30 ............................................... TCTGTTGCCACTTTAAACGGTGGTTTTTCG 972165 47 100.0 29 ............................................... CCCCATATCTACCGACTTTTTCAATACAA 972241 47 100.0 30 ............................................... TCCGTTGCTTCGTTGAACGCAGGTGGTTTT 972318 47 100.0 30 ............................................... TACCACTTTTGACCCATACACAGGGCAACG 972395 47 100.0 30 ............................................... AGTCCTTAACGAAGTACATAAATACACATA 972472 47 100.0 30 ............................................... CAGCAATGTAAAGATGAGGTTGGCAACAAA 972549 47 100.0 30 ............................................... GGTATCATATTCCAAAAGCACAACTAATCC 972626 47 100.0 30 ............................................... CTTAACGGTGATATGTCTCTTCGCTCTCGT 972703 47 100.0 30 ............................................... TCCCTTGTTCAATTTCAGACACTTAGACGT 972780 47 100.0 30 ............................................... TATTGGCTCTTTGAATGATGGTGAATTATT 972857 47 100.0 29 ............................................... TTAGCGAATATGGAACTTGCCTAATTATG 972933 47 100.0 30 ............................................... TCTTCTGCTTCCTCTAATGCTGCGCAGAGT 973010 47 100.0 29 ............................................... AGTGGTAATAATTCTTTCAATTTTACTGC 973086 47 100.0 30 ............................................... GCGATACAGAAGCAAAGGTACATACGTCGG 973163 47 100.0 30 ............................................... ATTATTGTAGTGCCATTCACCTCTATAAAG 973240 47 100.0 30 ............................................... GCTCACCTCGCAGTATGGCTACGACGCAAA 973317 47 100.0 30 ............................................... AGGTGCGTCGTTACTGTCAATGCTTACTAA 973394 47 100.0 30 ............................................... AGAAGCGGCACACGATGTACGGAACGTAAA 973471 47 100.0 31 ............................................... TAGCGTAGATGTTTGCTTTATAACAGCTTAC 973549 47 100.0 29 ............................................... CCCTCTTCGTTGTACTCTTTTTGCTTAAG 973625 47 100.0 30 ............................................... ACAAGTGCGTCTGTGTCAAAAAAAACGCTC 973702 47 100.0 29 ............................................... GCACGTGAGATTTTGAATTTTGCGGACAA 973778 47 100.0 30 ............................................... GTACGTTCCACTTCTATTTTCGCGTCAGGC 973855 47 100.0 29 ............................................... TTGCTGCTTACGCCGTTGCTCTGCTTTGT 973931 47 100.0 30 ............................................... TTACCTCGTTACTCAATGTTTAAGACCAAA 974008 47 100.0 30 ............................................... TAATCTTCGGGGTTGATAATCGCAAAGAAG 974085 47 100.0 30 ............................................... TAGTCTTCGGGGTTGATAATCGCAAAGAAG 974162 47 100.0 30 ............................................... GGAATGATAAAAGTAATTGACGGCAAGTTA 974239 47 100.0 30 ............................................... TGTCTGCCTTTCCGTATTTATCCTTTGGCA 974316 47 100.0 30 ............................................... AAAGTGTCTTTGTTTCCGCTGCAAGTTCTT 974393 47 100.0 30 ............................................... TACGAACGGGAAAACGAAACATTGTCTTAA 974470 47 100.0 30 ............................................... TTTTCCACCCCTCAAAAGGCGTTGTTCTTT 974547 47 100.0 29 ............................................... TATGTAGAAATATTTACAACAAATATTAA 974623 47 100.0 29 ............................................... TATCAACTTTCACGGAATTCTACCGACAC 974699 47 100.0 29 ............................................... GTTATCATATTACTGTTTTATTGTATCTG 974775 47 100.0 29 ............................................... TTGCAACAGCAGCCAATCTTTATATGATA 974851 47 100.0 30 ............................................... GGTATAAATGCAAGTGCTACTAACCTGTGA 974928 47 95.7 30 .........A.T................................... CCACCGCCGCTTTCCTCAGATACGCATAGT 975005 47 93.6 0 .........A.T..............................C.... | ========== ====== ====== ====== =============================================== =============================== ================== 61 47 99.8 30 GTTGTATTTGCCAATGCAAAGATACTAATTTTAAAGCTAATCACAAC # Left flank : AGCAAAGAAGATTGGTTTATCCAGAATTATAAAGCCTATTAGTGGAAACTTATAGATTTAGTCAATACAGAAGTATGTGGTTAATGGTATTTTTTGATTTACCCACAGATACAAAGAAAGAACGAAAAGCAGCTTCACTCTTTCGTCAAAACTTGCTGAAAGATGGATTTACAATGTTTCAGTTCTCCATTTATATACGCCACTGTGGTAGTAAAGAAAATATGGAAGTACACATTAAAAGAGTTTCCACCTTTATTCCTGCATACGGAAAAGTTGGAATAATGGGCATTACAGACAAACAATTTGAAGAAATAAAGCTATTCTATGGTAAGAAACCACAAAAACCAAATGCACCTGGAGCACAATTAGAACTCTTTTAACCCTTCTTTTAGAAACAATAAAGTTCCATTCTTGACGAGTGGAACTTTATTTTGCTTGCATTTTTCTTTCTCTCTAAGCTTTCGTAACAACACTGATATTCATTACTTTAAGCCATTTGA # Right flank : CTAACGACACTTCCGATTTATTGTTCTAAAATCAAGTAAATGGGGCAATAAATTTAACACAAGCGGAAAGGGGAAAATAGAGAAAAAGAGAGCTGGAAAATAGGGATTGAAAAGTGAAAGTGCCGCTTTTGCAATGCAAAACAATAGGTTTTACCGTGCAAAAGCGGCTCTTTTGGATTGCAAGAACGGCTCTTTTGCAGAGCAAAAAGATGATGATAGAGCGCAAAATATAGCCTATATGCGAACAAAAGTGTTCGTTTTACAGCACAAAAGGTATGGTTTCGTTGCACAACACTACCCTATAAGTTTGCAAGAAGCTATGAACGAAGCACTTATGGTAGCACGCAAATAATGACGTTATTTGCAAATAAATAATTTGAAGTGCAGAAAAGTGCCCGTAATTCGGAAGTTGGGGCTTTGAAATTTAACAGTTTCGGAGTCGTTTTAACGAATATTCAGGCTTTAACAAATGAAGGTATGCAACCACTGAAAATAAAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTATTTGCCAATGCAAAGATACTAATTTTAAAGCTAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 717827-719177 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030095.1 Prevotella intermedia strain KCOM 2734 chromosome 2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 717827 36 100.0 30 .................................... AATTAGGTTTCCCGCTTGCAATTCCAGCAA 717893 36 100.0 30 .................................... AAGCTTTCCCGTTTTTTTATTCACCCACTT 717959 36 100.0 30 .................................... TATTTTCGTCTTATCTCATTAATGGTCATG 718025 36 100.0 30 .................................... AGTTTACTACTGCTTTCTCTCCTGTTTTTA 718091 36 100.0 30 .................................... GTGTTAGGCGCAAGTGTCAATCTAAGGCGT 718157 36 100.0 29 .................................... CTTCTATCTGTTTGCTTAAATTAGAATTT 718222 36 100.0 30 .................................... ACTTTCTTATTGAATGACTTGCATGCTTCA 718288 36 100.0 29 .................................... GAATCTTTCATAGAAATATCTCTATTTAA 718353 36 100.0 30 .................................... CAGTACCAGTGCCCTCTGATGGAGTACCGT 718419 36 100.0 30 .................................... GCTTCAATGCTTCGGTGTTGCGATTGGCAA 718485 36 100.0 30 .................................... TTATTACCCCTTTCGCTTCCATTCTATGAA 718551 36 100.0 30 .................................... ATCTATACTTGTTCACGCAAGAAATAGCAC 718617 36 100.0 30 .................................... TTATCTCTCAATATCTGGATAAAGAGAATG 718683 36 100.0 30 .................................... TGAGAAAGAGGTCGCAACTGATTGACTACC 718749 36 100.0 30 .................................... GCCTCTGCATTCTTAGTAATAAACTCTTTC 718815 36 100.0 29 .................................... GTCTTGCTTGCCATTTGCTGGCACGATGT 718880 36 100.0 29 .................................... ACTACCACCGTATCTAACGTGTAGTTATT 718945 36 100.0 30 .................................... TAATAATTTTTTCATAATTTATCTTTTTTA 719011 36 100.0 29 .................................... TCCCTCCCGATAGTATAGGTTCAGTTTCG 719076 36 97.2 30 .........A.......................... TTTATTTATCGGGTATTTCTGAGCTTAAAC 719142 36 94.4 0 ..........................C.C....... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.6 30 GTTGCATCTGCCTGCTGTTTGCAAGGTAAAAACAAC # Left flank : TTTTGAGAATATTGAGCGTGCAAAGTATGAAGCCATACTGAAGGCGCACCAAAGCATTTATAAATTGCTTAGGTTTATTACAGATACGGAAAACGACGACTGCATAATGGTGTGGGAGCAGCCTAAGGGCGGCGGAGAGAAAACTTATTACTTCAGACAAGCCAATATACGTAAGTTTATAAAAGAGCTAACCGAAGAGATATACAACAAGGGCAATGGCATATTTCTATCAAAAAAGGTAATGCCACTGATATTCGAATATAGAAGTCTTGTCTATGGACTGTTGCTTACTGCGAAGGACAAGCCCGACGAAACGATAGAAATAAAGAATGAGAAGCTTGCAAAAAGAATGATAGAAATTCGTCAGAGCCTCTCAATACAAATCAGAAAAGATATAAATTTAAAACAACGAGATTTACAATTAGATAATAAGAATGCGTAAAATGGTGGTGAAAAGAAAGAAACAAAACATATAAGAATCAGACAGTTAGGTTAGATGC # Right flank : CTTATTAACAAGCAAGGGAGTGGAATTGGGGAAGTAAAAATGGAAGGGGGGAACACGCCTTTCTATGGGTGAAAAAAGATGAGAAAGGTGTAAATATTTTTCACAAGCAAAACTATTGCATAACTATCTCGTTATCAACGCATTGTAAAACCTATTGTTTTACATTGCGAAAGCGTAGGTTTTACACGGTAAAAGCGGCTCTTTTGCGTTGCAAAAGAGCCGCTTTTGGAATGTAAAATCGAAATTATGGTTTTTCTATGGAATTATCTTTACAAAATAGGGGTGGTTTTACGTCGTGGAAGGTGTAGAGGTTGTGGCGTGGTTTCGGACGGCAGCACAATGGCGGCTTTGCCGATAGTGCGACATTGGCAAGGGTGGTTGGGGCTTCTGCATCGGCTCGATGCGGTGGCTCGTTCGGTTCTGTTGGTTTCGGTTGATGTGCAACGACGACATGAAAGCCGCTGTACAGAGCAAGATAAGATGCTTTCTCATATCGTTAT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATCTGCCTGCTGTTTGCAAGGTAAAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //