Array 1 522311-523402 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQYG010000001.1 Listeria cossartiae strain UTK_C1-0002-E1 NODE_1_length_528806_cov_83.771471, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 522311 36 100.0 30 .................................... CGCTCCCCTTCGCTGAATACGTTTCTTTGC 522377 36 100.0 30 .................................... AAGTACTTTTTATAGAAAACTCCAAAATGG 522443 36 100.0 30 .................................... CAGCGATGCAGTGAGGAAGCTGAAAGGCGG 522509 36 100.0 30 .................................... CCACTCCGTTTCCTTTATGCTGTTACTGTA 522575 36 100.0 30 .................................... TAATCCACCACGATCTATGACAAATAAGCG 522641 36 100.0 30 .................................... AAATTGGAATACTTAAGGAATCGCAAGGGT 522707 36 100.0 30 .................................... AAAGAAAATCTTGAGAGTACGGTTACTATT 522773 36 100.0 30 .................................... AGTCAAACGGAGATCAGTTATACATTGCGA 522839 36 100.0 30 .................................... CTTTTAGATGCAGATGGTTTTATCACAGCA 522905 36 100.0 30 .................................... TAGGAAAGTTATTGCTTGACATTACCGTTA 522971 36 100.0 30 .................................... TTAATGTGTCTATTAGTTGTCATGTTGTAA 523037 36 100.0 30 .................................... TTGAGAATCCGATGGTTGTTGATGATCTTT 523103 36 100.0 31 .................................... CATGTGTATGTGTGGCGTGCACACCTGTAGA 523170 36 100.0 30 .................................... TTTTCTCCGTCCATTACAATCGTCGACAGC 523236 36 100.0 30 .................................... ATGTTTCTCTAACAAGTCCCTTCCACACCA 523302 36 97.2 29 ..................................C. ATCTGATGAAGATAACTACGCTGAAAAAA 523367 36 77.8 0 ......A......A......A..G....G...T.TA | ========== ====== ====== ====== ==================================== =============================== ================== 17 36 98.5 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : TTGATAAGTTAACTGCGACAATTAGCGAGTTAATAGGTTACGAGCTATTGGAGCATGAACTAGATTTAGAAGAAGATGAAATCACGGTTATTGAATTATTTAAAGCTTTAGGAATAAAAATAGAAACTAAAAGTGATACAATTTTTGAGAAATTAATTGAAATTGTACAAGTCTATAAATATTTATCAAAGAAGAAGTTGCTAGTTTTTATAAATGTATGTGCTTATCTTACAAAAGAAGAGTTGTTAGAATTAAGAAGGTATATTTCTTTATATCAAGTGAAAGTTTTGTTTATTGAACCTAGAAAAACAGACGGCTTTTCGCAGGTTATTCTGGATTCGGATTATTTTCTGCATGTGGAAAATGGTGTTTAAGGACCGGACGTTCTTTGAAAATAAAATATAGTTTAATTAATTTATTAAAGCAGCATTCAAAATTGAAATCTTGCTATGGATAAGTAGCGCGATTACGGAATCTTGGAGGATAAAAAATTCTACGAG # Right flank : AAGAAATAAAATCTTTCACATCAAAAGTTCTCGGTAGCTTTTAACAAGGACTATAAAAATTCAAAAAGGAGCTAAACCAACCACATGACACAATATCACTACCTCGCTTCAAAGTCGCTCCTACAAAAAAATGAAGATAAGCTGGCTTCCCCTTTCTTCTATATAAATGATCTAGATTTCTTAATCTTAAATTTCGAGGCAAACATCGACTGTGATACAAAAGATTTATTCTCCTATTCAATACACTTCAATCAAGCTTGCGAATTTCAAGTTGGTATAAGTGAAGGGGAATTACCATTAAAAGGCGAAGTGCAAAATAACAAATATGAATCTAAAAGTTTGAAAATATTATATGATTACATTATAAAAGCGAGTAAAGAAAGCGATACACTTGAACTATATACTTCGTGGAACGGCGAGGAGAATCTTCCTTTAACAAATAAAACAGAACTATCCATAGAGAATTTAACTCCTGAGAGCTTGATTTTAAGCGATAGAGA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 127021-126346 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQYG010000004.1 Listeria cossartiae strain UTK_C1-0002-E1 NODE_4_length_399572_cov_75.459765, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 127020 29 100.0 36 ............................. GACTCTGATTTTAAAGAGTACGTAGACGAGATAAAC 126955 29 96.6 37 .............T............... TTCACATGGTATTGATTATAGTAAAATTAATGAAAAG 126889 29 100.0 34 ............................. TAAACTTGCTTGCAATCACTATTATATCATTAGT 126826 29 100.0 34 ............................. TGTCTAAACTTACACAAATGAATAAACAAATATT 126763 29 100.0 36 ............................. GCTTGATACTGAACAAGTGTGATACTGTTGTCATAT 126698 29 100.0 34 ............................. AGTGTAGCGCGAATAATTTTCTTGTATTCTTCAT 126635 29 100.0 37 ............................. TACCCAGAATTAAATTTTTATGATCCGCTTGACTTTC 126569 29 100.0 37 ............................. CACGAATCAATTCGATTAACATGATACGGACGCCCCG 126503 29 100.0 35 ............................. ATATCCGCAGAGAGTTCTAACATGTGCGGATAATT 126439 29 100.0 35 ............................. GTGTACATCCAGTTAGTGGCTTGGTAGATATATCC 126375 29 82.8 0 ...............C.C....CC....C | A [126350] ========== ====== ====== ====== ============================= ===================================== ================== 11 29 98.1 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGGTATGTATGTAATTTTAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCGGCGCTTTTAGTTAAGTTAAGGATGGAGGTAGATAAGTATATTCGAGATGATCAAGATTCAGTGATTGTATTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAAACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGATCTTTAGTAGTGCGAAAAATATTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGGAAATCTGAAGGGATAAGTTATGATTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGTGTAAAATAGAGCGG # Right flank : TTCCTCTCAACATCCAAATTCCAAAAATAAAAAAGACCTGGATCCCAATCCAAGTCTTTTCCCCTACCACCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAACCCTGCTTCACCAAAATCCCTTTAGAAGAAGTCAGCCCGCCAAACAGCGCCGCCACAACTACACAACTCAAAAAGAAAATCTGCACAGTTTCAGCAAATCCTGCACCTGCAAAAAACAACCCCCACACAAGCCCTGCCGCAAGAAACCCATTATAAAGCCCTTGATTCGCAAACAGCGTCTGTACTTTCTTATTCGCAAGTAGTTCCTTCTCTACGCCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGTTCGATCATCACGATGAAGGTTAAAATAAATGCTAAAATGGCCATGAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATAG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 142832-141955 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQYG010000004.1 Listeria cossartiae strain UTK_C1-0002-E1 NODE_4_length_399572_cov_75.459765, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 142831 29 96.6 37 ..........T.................. AAGCTAGTTATAACTCGGTCATCTGTGAATTGGAACG 142765 29 100.0 37 ............................. CAAAGAACAGGTGAAATACCAACACTACCTAAAGTTT 142699 29 100.0 37 ............................. GTTGTAACTAAATTAGGTATTAAAGGTAATGGATCAG 142633 29 100.0 36 ............................. AGCGCTACAAAGTCAGCAGCATTAGCAGTAAGTAGC 142568 29 100.0 35 ............................. GCGAAAGAATCGAAAAAATTAGGTGGAGACTTCGG 142504 29 100.0 37 ............................. GACAAACGTAGCATAGTGTCTGATTCTCGAATCCCTT 142438 29 96.6 35 ..............G.............. GAAATCGCCGGACACGTCCAGTTTGCGCGATTTGT 142374 29 96.6 34 ..............G.............. TCGATAGTACTATTTAACGCTGCCGCTGCACCGG 142311 29 93.1 36 ......A.......G.............. TTTATCGATTTAAGCGATTGTAATTGCGCTATTGCT 142246 29 96.6 36 ..............G.............. GCAATTACAGATATAAACGACACGAAAATCATTACT 142181 29 100.0 38 ............................. ATGCCAATAAACTCACCATATTTCTTGATGTGTTCACA 142114 29 96.6 36 ..............A.............. AGAGCAACCTGGTCTAAAGCAATAGGTGTCACTTCG 142049 29 96.6 37 ..............A.............. TTCGATGGCTATAACGCACGTTTGCATAAAGGCGAAA 141983 29 96.6 0 ...............C............. | ========== ====== ====== ====== ============================= ====================================== ================== 14 29 97.8 36 GTTTTAGATACTTATTGTGAAATGTAAAT # Left flank : GCTACCACGTCAGCTGATATATTATTAGAAAAAGGTGCCGTAGAAGTCATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGTTTACAAAATTCCAATATCAAAGAAGTAATCACATCCGACTCCATCGATCTTCCAGAAGACAAACAATTCGACAAACTAACAACCATTTCTATCGGCCGTATTTTAGGCCGCGCAATCGAAGGCGTTCAAGAAAATCGCTCGTTGCATCCGTTGTTTTAAAGGGTTAATGAAGAAAACAGTAACTTTTAGAGTTGCTGTTTTTTTGCGTTTGGTTGTTTGTCGACCTTTGGTAGTGTGAAAAAGGCTGGGGATCGACAGAAAGGTGAGAATGGTTGGAGTGAGGGGAGTTTGGTGGTTTTTGGTTTTGAAAACCATGTAGAGAAGGATGGATTTTCATTGATTTTTAGTCGGTCGACAGAAATAGGCTTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : CATTTCCAATGCCTATACAAAAAAGCCAACCAACAGGATTTAGGCTTATTTTTTATCCCCCCCGTTAACAATTCCGCAACAAACACATCAAAAACCCCCAATTTCCTCCGAACCTCCAACTACACCACACGCCCAACCTATGCTAAACTTCAAAGAGAAAGCCAAAACCACATACATAAAAGGAGGATTTAAAATTGAAAAAGACCCTAATCCCAATACTACTCCTAACAATTATCCTGGCAAGCTGCTCCTCTCCAAGCGGAAAAGTAACAAAAGACACCAAAATCTCCAAAACCATCACCATCCGAGCAGATTACAATATCCCGAAAAACATGAAAGAAGTAGCAAATAATAGCAATAACATAGTCAAAGTAAAGCTTCTGCAAAATAAAGACATTGGCAAAGAAAGCAACACAATTAGTGAAGTAGAAATTTTAGCTTCCTACAAAGGCGACCTAGAAAAAGGTGATAAAATAGATATTTCAGAACCATGGTACTTA # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATACTTATTGTGAAATGTAAAT # Alternate repeat : GTTTTAGATACTTAGTGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //