Array 1 93441-92192 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJHQ01000008.1 Escherichia coli strain 3759 NODE_8_length_168806_cov_133.849, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 93440 29 100.0 32 ............................. TACTAAAAGTCTGGTTCACGAATATCAAAAGG 93379 29 100.0 32 ............................. ACGGCTTCATGTTCTTGGTGATGGGGTTCACC 93318 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 93257 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 93196 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 93135 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 93074 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 93013 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 92952 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 92891 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 92830 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 92769 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 92708 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 92647 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 92586 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 92525 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 92464 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 92403 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 92342 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 92281 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 92220 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 120789-118990 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJHQ01000008.1 Escherichia coli strain 3759 NODE_8_length_168806_cov_133.849, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 120788 29 100.0 32 ............................. AGCACAAATATCATCGCTCAAACCACTTACGG 120727 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 120666 29 100.0 32 ............................. AAAATAAATGATAATCAGACGGTTAGCAACGT 120605 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 120544 29 100.0 32 ............................. TATTCGTAGGGTTTGCGCCGGAAATAGGCGCT 120483 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 120422 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 120361 29 100.0 32 ............................. CGCCACCAGCGATAGAGCCGCAAACAGAGCCG 120300 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 120239 29 96.6 32 ............................C AGGTCCTCGTCAGATACAGTAGTCACAACACC 120178 29 100.0 32 ............................. CACTGACAGTGAAGCTGAATTACAGGCAGAGG 120117 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 120056 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 119995 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 119934 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 119873 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 119812 29 100.0 32 ............................. TGGCAGGCCGGTAATATGAAAACGACAGAGCA 119751 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 119690 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 119628 29 100.0 32 ............................. CAGTTGAAGCGCTTTAAAAAATTCTGGACGGC 119567 29 100.0 32 ............................. AGATCGACATGAGCCGCCGCGCGACGAATAAC 119506 29 100.0 32 ............................. TACCGATAATCGGTACAAGATAGTATTTACAT 119445 29 100.0 32 ............................. GACTATCGCGGGCTGCTGAAATCAACCGGCGA 119384 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 119323 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 119262 29 100.0 32 ............................. ACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA 119201 29 100.0 32 ............................. AGCAGATACACGGCTTTGTATTCCGTGCGCCC 119140 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 119079 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 119018 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //