Array 1 116920-116157 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXFO01000002.1 Salmonella enterica subsp. enterica serovar Alachua strain BCW_2186 NODE_2_length_604883_cov_6.28409, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 116919 29 100.0 32 ............................. ACGAGTCGCAGGAGGGCGAAACCATATTATCC 116858 29 100.0 32 ............................. ACCCATATCAACGCACCGAAATTACGGACGGC 116797 29 100.0 32 ............................. ACGACTGAATTAAAACCATACGGCGGCTCATA 116736 29 100.0 32 ............................. ACGGGGAGTCAGTCACATCCATTGAGGATGCG 116675 29 100.0 32 ............................. CCTCCAGGATACCCCCACCGATGAAGGTGGGG 116614 29 100.0 32 ............................. AAATCATTCATCATCGCGATAGCGATCGAATC 116553 29 100.0 32 ............................. GCGTTGGCGTCGCCCAACACCATCGCCGGGGC 116492 29 100.0 32 ............................. AATGCTTTGGCAAAATCAATTCCCCCAATTGA 116431 29 100.0 32 ............................. TCCGGGCGTACAGATATCATGAGTTCTGACGA 116370 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 116309 29 100.0 33 ............................. GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC 116247 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 116186 29 96.6 0 A............................ | A [116159] ========== ====== ====== ====== ============================= ================================= ================== 13 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTACCGCCAGCGATACCAGAACCTGAATCCCTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTGGAGATTCGTGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGTATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGCGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 134731-133178 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXFO01000002.1 Salmonella enterica subsp. enterica serovar Alachua strain BCW_2186 NODE_2_length_604883_cov_6.28409, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 134730 29 96.6 32 ............................A TTACCGTATGACAAGCGGGTAAAAAAAAGCCC 134669 29 100.0 32 ............................. AAAACATGCATATGGGCTGGTAACGGCTTTGT 134608 29 100.0 32 ............................. TCGTGACCATGAATAATGACGTCATCACCGCG 134547 29 100.0 32 ............................. TGCACATTATTTCAGGGCGAAATCTCGTCCGC 134486 29 100.0 32 ............................. ATGCTGGCGCATCATGTAAAATCGCGTGCCAA 134425 29 100.0 32 ............................. TCGGTTATTGAGGACGTCACCGACGACGCACT 134364 29 100.0 32 ............................. ACATTGAACCTCCTCAATAGGGCAGGTCGTTC 134303 29 100.0 32 ............................. GAACGACGACCAGATTAACGCCGGTCTGGAAA 134242 29 100.0 32 ............................. GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 134181 29 100.0 32 ............................. GCGCGGCATAACAGCACGGGCACGCCGCCAGG 134120 29 96.6 32 .................A........... ATAAATTATCGGGAAATCATAATCAGCGCCGC 134059 29 100.0 32 ............................. CCATTTTTGATCATCTCCTCCAGCCTGCTGAG 133998 29 96.6 32 .............T............... GCGCAGTATCAGGGAACGGCCGTTATTACGGT 133937 29 100.0 32 ............................. GCAATGGCAAGTAGTTCTCAGATGAAAGTCAG 133876 29 100.0 32 ............................. CCAACGGACGAGATCCTGGACTGCGACGGGCT 133815 29 100.0 32 ............................. GAAAGATTCACATTTAAAACTAGTGATTTTTC 133754 29 100.0 32 ............................. CGGGCGTTAACGTCCGAAGAGGTTCGCGAAAC 133693 29 100.0 32 ............................. TCTGGTGATTTGAAAGACTGGCACGCAGAGGA 133632 29 100.0 32 ............................. AAGATACAAAAAAGTACACGTAAAGTGCACGT 133571 29 100.0 32 ............................. CCATAAGAGCATCCCCGCCATCCGGAGGGGAA 133510 29 100.0 32 ............................. AAAAAAATGCGATCGGTACTCAACCCGGCCAC 133449 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT 133388 29 100.0 32 ............................. TGGTCGCAGCCTGGCCTGTTGCCGTAGAATCG 133327 29 96.6 32 .........T................... AGTTACTGATGCAGACTGCGGATCTTAATCGG 133266 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 133205 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCTAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //