Array 1 16-1340 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOTW01000052.1 Rugamonas rubra strain ATCC 43154, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================================================================================================================================================================================== ================== 16 32 81.2 34 CC....GGG........C.............. GGTGTATCCTGACGCGGCGGGCGGTGCGCGCAAG T [20] 83 32 84.4 34 ..T...T.T........C.A............ CGCTGTACCAAGTAGCCCGGGTCGCTAGTCCCTG 149 32 90.6 33 ......T..........C...C.......... CTTGAACGCCATCGAGCACCAGCTCGCGTTGCC 214 32 93.8 34 .................C......C....... GGCCAGCCCGCCGGCGCCGACTATGACGCCTGGC 280 32 96.9 33 .................C.............. ATCATAAATCGACAAGAACACCTCGCCGATCTG 345 32 100.0 35 ................................ TTTCCTCAATTGAATCTCCGCGTACACCTCGGGCT 412 32 96.9 35 ......A......................... ATCAAGCAAAGTATCGACGCCGCCGACGCGCTCAA 479 32 93.8 36 ......A......C.................. AAGCCGACCATCGGCCGGAAGATCAACGAGGAGTGC 547 32 93.8 37 ...C.......................T.... GACGGCACCGTAAACGCCATCAGCCACACGATGCGCG 616 32 100.0 35 ................................ GGCGATATTGATAGCACGCAGCGTGCGGCGCTGGT 683 32 84.4 35 ............T...AC.....A....C... TGGATCTCGGCGCCTGTCAGGCCTTTGAAGCTAAG 750 32 87.5 34 ...........T....AC..A........... CGCTGCACCGAGTAGCCCAGGCCCCGAGTCCCTG 816 32 87.5 33 ......T...A.....AC.............. AACCCTTACGCCATCGGCGTCGTGGGCGGTGCG 881 32 90.6 35 ......T.........A.............C. CACGGCATGGACACATTGACCGGCGTCCCTACGTT 948 32 87.5 32 ......T..G.......C.............T TCCACGTCGATGTGGCGGGAAAAACCACCCTT 1012 32 90.6 35 .G....T..........C.............. GCCACCCAGGCCGTCGCCCGCGAGTCGGCGCTGTC T [1015] 1080 32 81.2 197 A.....T...A.A....C..T........... GCGCATGTGGTGGTCGACAAGAGCGCGAAGCTCAAGGGCACTCCGAACAACCCCGAATTCGTCATTCGACATCGGCAGACCGCCGGGTAGGCGAGAATTCATACCGCGCGATACCGTATGTCGCGTATAGAGGAGAGCTCCGGCAAGGCATAAGTTTCCGCCTGCGCGAAAACGGCAGCTTTTAGAGCTGCCCTCAG 1309 32 75.0 0 A.A.G.T.....C....CA............A | ========== ====== ====== ====== ================================ ===================================================================================================================================================================================================== ================== 18 32 89.8 44 GTCGCGCCCCGCGTGGGTGCGTGGATTGAAAC # Left flank : GTCGCGCCGTCGCATC # Right flank : ATCAGGTTCGGCGCAACTGAGCTTGACCGCAATCTAAGGCTGCTATCCGGGCGAGAAATGGCATCATTGCACTTATGACGAATACGGCAAAATCACCCTATCAAAAAAGAATCGACGACCACGTCCACAAGTGCAAATTCACCTACAGGTCAAGAAAGAAAATGGCCAACGGATCATAAGAATCTGCTGCACCTCGCGCCCTCTCATTTCTTCTCGCCCTTCAAGGCCTTGGTCAGCGCCTTGCACAGCGCCAGCGGCGGCGTCTCGCGCGGCGTGACCTCAACGCGCATGCCGCCCACCTGCAAATCGTGCACGCGCGGCGCGACCACCTCGAACTCGCCGGCCAGCAGCTTGCCACGCAGCGGCGCGCAGCCTGCCGCGTCCTGCGGCAGGCTGCCCAGCAGCGTCCACTTGCCGTCCACCCCGAGGCCCAGCAGGGCGGCGCCGATCTGCGGCTCCTTACCCACCACCAGCACGTCCGGCTTGCCGTCGCCATTCAT # Questionable array : NO Score: 7.00 # Score Detail : 1:0, 2:3, 3:3, 4:0.49, 5:0, 6:0.25, 7:-0.92, 8:1, 9:0.18, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGCGTGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.30,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [18-33] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [6.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //