Array 1 405095-402606 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018823.1 Aquitalea magnusonii strain H3 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 405094 28 100.0 32 ............................ TGCAAATCGTAGATTTACATCATGGGGCGTTC 405034 28 100.0 32 ............................ TTGTTGGGAACGAGTAACTGGGCAATGGACAT 404974 28 100.0 32 ............................ GCAGTCGCACCTGAACAGCCAGATGGCCCGTT 404914 28 100.0 32 ............................ TGGTTGCGGTAGTCCATGAACATCGAGGCAAA 404854 28 100.0 32 ............................ CTCCCAACTCTTGCAAGACGTGCATCGGTGTT 404794 28 100.0 32 ............................ TGATTACAAGTCTCAAGGACGCGATACAAAAC 404734 28 100.0 32 ............................ AACAGGCGAAGGCTGAAGCAGGGAAGCAGGGC 404674 28 100.0 32 ............................ TTGCTGGGTGCCACAAAGCTATTCGGCATACC 404614 28 100.0 32 ............................ ATTTGAGCCGCCGCGATGATCTCCATGCCCTG 404554 28 100.0 32 ............................ AGTTGCTCAAGTGGCGGCTACTCAAGAGTTTG 404494 28 100.0 32 ............................ TTGCAAAGTCATTCACTATGATCAGTAATGGT 404434 28 100.0 32 ............................ TCTTCCCCTGGCATCGATGACCCTTCTAAATG 404374 28 100.0 32 ............................ CTGCACCAATGGCAGACTGACAGCCTGGATGC 404314 28 100.0 32 ............................ TTTTGGTAGCCGGCGATCACCTCTGACAGCGG 404254 28 100.0 32 ............................ ATATACGCAGCCATGATCGCCAAAGCCCCGCA 404194 28 100.0 32 ............................ ATATTCGAGGCCAATGCATACGAGTACAAAAC 404134 28 100.0 32 ............................ AGGTTTCGCGGTAGTCGCATGGGATGAATGAA 404074 28 100.0 32 ............................ GGTTCCATTGCAGTTGCGACATTTCACATCAG 404014 28 100.0 32 ............................ ATTCAATTTCCAAGTATTTGAGGAAACGGATT 403954 28 100.0 32 ............................ CAATCGCGCGTTGATTGCTGGCCGCATCAAAG 403894 28 100.0 32 ............................ TTGCCATGCCCAATAGCGGCCAGTGGCATGAT 403834 28 100.0 32 ............................ TGACTGCGGCAATCAAACGCTGGATCAAGCGT 403774 28 100.0 32 ............................ TTGTCGATGCCAAATTCCTTCACGACTTCGCC 403714 28 100.0 32 ............................ GTGCAAGGAGTTGATCGCGGTATTGCCCAGTG 403654 28 100.0 32 ............................ CAGCCTTCCAGGCCGCGCAGTTGACGGGCAGT 403594 28 100.0 32 ............................ CTCGCTGGGCATTCATTCTGCTATCTGGCCGC 403534 28 100.0 32 ............................ ATGGTGTGAATTCAACTGCAGCCCTGCCGATC 403474 28 100.0 32 ............................ GTTGAGGTACCCGCTCAGCGCTTGCTTGCTCA 403414 28 100.0 33 ............................ ATAATAAAAAAGGGAGCCGAAGGCCCCCTCCTC 403353 28 100.0 32 ............................ ATAAAGAAAACCCTTGCCTGCATTTTTTAAAA 403293 28 100.0 32 ............................ GGCAAAAAAATCCACGTTCAAGTTTGAAGGCA 403233 28 100.0 32 ............................ ATCGCCGCAGCCGAGGCGCGGGAGGGGTGCCG 403173 28 100.0 32 ............................ ATCCCGCGCGCCATCCACCTGTTTGGCCACGC 403113 28 100.0 32 ............................ AACAGCCCCTGCAAGCGCGACGGGTTTACCAC 403053 28 100.0 32 ............................ ATCCCGCGCGCCATCCACCTGTTTGGCCACGC 402993 28 100.0 32 ............................ TTGTCCTGGACAACTTGACCAGCAGGTGCGGA 402933 28 100.0 32 ............................ TGAGAGGCCTTCATTGCCGCTTCGATTATTTG 402873 28 100.0 32 ............................ TTGATCAGCGCCATGGCCGGGGGTGGGCTCAC 402813 28 96.4 32 .........A.................. ATCATTGTGCTAACTCCAGAATGCTGCGAGTG 402753 28 96.4 32 .............C.............. ATTAGAGTGCCGTCGAATAATCCATGGTTGAA 402693 28 89.3 32 .............C....T.....T... GCCCCGCCCGCACAGGTACAGGATGGATGGCC 402633 28 78.6 0 C............C.......C.CC..T | ========== ====== ====== ====== ============================ ================================= ================== 42 28 99.1 32 GTTCACTGCCGGATAGGCAGCTCAGAAA # Left flank : GTGGGCCAGCGGCTTTGCCGATTACGCGCTGATTGGCAACATCCGCCCGGTACCCGCCACCACCCAAGTCATTCGCGTACAGCGGCGGCAAGCCAAAAGCAACCCGGCACGCGAACGCGCCCGACTGATGCGCCGCAAAAACATGGATAGCGCCGAAGCATACCGCCTTATCCCTGACAGCAAGGCACGACGCCTGCCACTGCCCTACATCACCCTGGACAGCAGCAGCACCGGCCAACGCTTCTTGCTGTTTATCGACCAGCATGTAGTCACACAAGCGGTGAGCGGTGAGTTCAACAGCTACGGCCTGAGCAGCAGCGCCACCCTGCCCAGTTGGTGACACGAGGGCTTGCTGCCGGAGAACGGCGGCAACCCTTTTTTTCACGCGGCTCCGCGATCTTTAAAAATCAATCAGTTACAACACAGCAGCAAAGAAAGGTTTGCGAAGCCAGAATGGCCCACAGCCAGACTGGCCAAGCAAACCAGCGTAAAGTGGTCTA # Right flank : CAACCGCGCCCGGAGACTGGACATGCACCGATGACTCACCGAAGAACGGATTACCGGCGTGCCGCGCAAAACAGAGGCAATGCGCTAGCACAGGTGGGGCCTGCTTGCCGGCAAGCTGCTGCAGTAATCTGTAGCCGCATGTGCTGGCTGGCGCCTCAGTGCGTCTGTGGCTGGGTGACAAAGGTGATGCGGTTGACACCTGCCTGCTGTGCCAGCGCCATCACGGCGGCAATGGCTTGATAAGGCGTGGCTTGATCGGCTTGCAGTTGCAGTTCCGCTTTGGCTGCGCGATCTGCCTGCAGCCGCTGGGCCAGGGCTTGCTGGCTGATGCCCTGGCCGTCCAGGTGAAGGCTGCCGTCGCGTGCCAGTGTCAGTTGCAGTACCTGCGGATGCGCGGTGGCTTGGGTCGCCACCGTGCGGGGCAGATCGATGCCGATGGCCTGCTGAAACAGTGGTGCGGTAATCAGGAAGACCACCAGCAACACCAGCATCACATCCAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGGATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2535040-2532510 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018823.1 Aquitalea magnusonii strain H3 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2535039 29 100.0 32 ............................. CGAGGCCGCGCTGGATTTGCTCACCGTTCAGC 2534978 29 100.0 32 ............................. CCTTGTGCATCAACACTTCCACGGCTTTCACC 2534917 29 100.0 32 ............................. AACGCCTCCTTGAGCCGGTAGGCTTCGCCCAG 2534856 29 100.0 32 ............................. CCACCGGTACCTTCACCGTTGCCGGCACTGCG 2534795 29 100.0 32 ............................. ATGCCAGCGCCGATGATATCGACAACTTCGCC 2534734 29 100.0 32 ............................. GAGGCATTCTTGCGATAACCCGCCTTGAGTGC 2534673 29 100.0 32 ............................. GCTTGCCGTTACATCGACACTAGTCCACCCCT 2534612 29 100.0 32 ............................. TTCTGCGGCAGCTTCACCATCGGCACGTCGTT 2534551 29 100.0 32 ............................. ACGTTCGCGAATGGGTGAGTACAGTTCTTCAA 2534490 29 100.0 32 ............................. TGCCATAGTCGGCCGGGATCACCTCCGGCCCC 2534429 29 100.0 32 ............................. TCGATCTACCTGAACGACACGCCAGTACAAAA 2534368 29 100.0 32 ............................. AGCAGCGTGACCGCCGTAGACGGCGTGCTCAA 2534307 29 100.0 32 ............................. CTGGCAGTCGCTGGTGAATACCGTGCTCACGC 2534246 29 100.0 32 ............................. CCGCCGTCCTCGGTCGCGGTCTTCCGGTCGTG 2534185 29 100.0 32 ............................. TCGTACACGCCCTGCAGGCTGTAATCGGTGAA 2534124 29 100.0 32 ............................. TTCAGTGCCGACTTGGCTGCCTTTTTCATCTG 2534063 29 100.0 32 ............................. GGTAGGGTCGCGTGGTGTGCCAGCACCGTTAC 2534002 29 100.0 32 ............................. ACCGTCGATGATGCGAAGCGCCGCTATCGTGA 2533941 29 100.0 32 ............................. CCACATGTGCTCATGCGGCTGCTACCGACCGC 2533880 29 100.0 32 ............................. CAATGCACCGTCCGGCAACTGCGGCCACCAAC 2533819 29 100.0 32 ............................. GTTCCAGCATTGGGGTCAATAGTTTCTTTATT 2533758 29 100.0 32 ............................. ATCACGGCAGCGATTGCGCCGATACCGGCAAC 2533697 29 100.0 32 ............................. CCTGATCGTTGCCGAATGGGATGGCAGTTTCG 2533636 29 100.0 32 ............................. CAGAAACTGCTCGACGACATTTTGTTGCCTGA 2533575 29 100.0 32 ............................. CTGGCGCATCCTGTCGAAGTCGATGCCTTCGG 2533514 29 100.0 32 ............................. CGCCATGCCCCCGCATCCAACCTGCACGAATA 2533453 29 100.0 32 ............................. CAGCTGCAAGCCAGCCAACAGCAGCGCATCCG 2533392 29 100.0 32 ............................. TGCCGGGGTTGCTTTTACTACTGCCTCAGATG 2533331 29 96.6 32 ............................A GATCGTCGGCATCCAGACTGATGGTGTCCAGC 2533270 29 100.0 32 ............................. CATAGTTAGCTCCTGGCGCTATGTGATGCGTT 2533209 29 100.0 32 ............................. GGATGCAGCAGATCAGCCCACGCTGATGACAA 2533148 29 100.0 32 ............................. TGGAAGAAGGCCGAGCCGGGTCCGAGTAGCAC 2533087 29 100.0 32 ............................. ACTACAAAGCAGCCCGCCGCCTTTTGCGTGAC 2533026 29 100.0 32 ............................. CCGACGACGCCCCCTGCTGCTGGCCGACGACT 2532965 29 100.0 32 ............................. CAAAGGAAAAGCTGGGATGTGAGAGCGACTAC 2532904 29 100.0 32 ............................. ACAGGTAGACAGCGGCAATGGAAAGAACGAGG 2532843 29 100.0 32 ............................. AAATTGCGCCTGCTGATGAGTCATTTTATCGA 2532782 29 100.0 32 ............................. TTTGCCGTGGCCTCGTGACATACTTCGTGATG 2532721 29 100.0 32 ............................. CCTAGTTCTGGAGTGTCAGCCATTACTTGGCC 2532660 29 96.6 32 ...........T................. TAGGTGTAACCAGATGGCAGGGTCGGCGACGT 2532599 29 100.0 32 ............................. GCGTCGTTGATCAGTGCGCGGATCTCGCTGCG 2532538 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 42 29 99.8 32 CTGTTCCCCGCGCCCGCGGGGATGAACCG # Left flank : CCCGACATTGAAGATATTTTGGCGGCAGGCGGGTTGGACCTGCCCAAGATCGAGGGCGTGGTGGAAGCAGCGATACCGGAAGAAAAGGGGCTGGGCGATGCTGGTCATCGTGCTTGAAAACGCGCCGCCACGGCTGCGTGGCCGCATGGCCATCTGGTTACTGGAAATCCGCGCAGGTGTGTATGTGGGTAACTACAGCCGCAAAGTGCGTGACTACCTGTGGGGGCAAGTGGAGGCCGGGATAGAAGAGGGCAATGCCGTCATGGCCTGGCAGGCCAGTAACGAAGCCGGTTTTGACTTTGTCACCTTGGGGAAAAACCGCCGCATGCCGGTGGAGTTTGACGGAGCCCGGCTGGTATCATTCCACCCGCCAGACAGCTTGGATCAGGAATGACCTCCCGTTCTTTAACAAGCTGAAAATCAGCAGTGCAGTGCAGCAAAAAATCGGTAGATTTTTGTGTGGTTGGAATGCTGATTAAAAACAATGACTTATTTTTAGA # Right flank : GGCGAGGTAAAGATGGGCGTCACGGTCACTCTTCCCCCCCACGGCGCTGCTGCCGTTGTTTCTGGCTGCTGGCGGGATCAGGGGCTGGACTGAGCATGTTGGCTGAATTGCCGGACAAGCAGTGCGATGAGCTGCCTTACTGCCGGACTGGGCTGGTAGCCTGTGCGGGTGATAAGGCCCAGGGTGCGTGATATGTGTGGCTGTCCCAGTGCAATGCCGGTCAGGCTATGCATATAGGCCGGGGTGAGCGATAGCTCGGGCACCACCATGGCACCCAGGCCGGCCATGGCCATGCCATAGGCACCGTGCAGATGGCTGGCTTCATAGTGAATGCGTGGCCGCTGCGGCAGGCCGGCCAGGTGGTGGTCCAGCAGCAGGCGGTTGCCACTGCGCTGTGCTACCCCTATCAGTCGTTCTCCTGCCAGTTCTGCCCATTCCACCTGCTGACGGCCTGCCAGTGGGTGGTCGTGGCGCACCACCAGCACATAGCGTTCGGTCAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //