Array 1 54086-54846 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMVM01000016.1 Pseudomonas stutzeri B1SMN1 contig00016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================= ================== 54086 29 100.0 32 ............................. TAAGGTTCGAGGTGCATAGGCCGCAGGGAGGG 54147 29 100.0 32 ............................. GTGACTATCGAGCAAAACAGGGGGATTAATCC 54208 29 100.0 32 ............................. AGTGCCCCTTGAAATACCCATGATTACCAGAT 54269 29 100.0 33 ............................. CTCCGGCGTGAGCATTCTGTTATGCGCAAGAGC 54331 29 100.0 32 ............................. TAAGTACCGCCCAAGCGGGTGAGCAGTGCCCG 54392 29 100.0 32 ............................. GGTTCCCTGGATTCCCACCGGCACCGGAATCC 54453 29 96.6 93 .......................A..... CTTATATATCCAGGGAGAAAATCAGGGTTCTGGTGTTGTCCACCTGCGTGGAGGTATTCGGTAGCTGCGCCCGTCATCGCCGTTGATGAACCC 54575 28 75.9 32 ..G..C......-C..TA.....A..... TCCTGTAGCGCACGTCGCGAAACCGCAGCAAC 54635 29 79.3 32 .....C..T...CAA..........A... TATTTTGGGGATTTGAAGGGGTATTGACGGTT 54696 29 100.0 32 ............................. TACACGTCAGCTCGCTTTCAGCAGAGGCCGCA 54757 29 93.1 32 ..G...............A.......... GGCTGTGGGGATGAGAAATGAGCAAGCGCGAA 54818 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ============================================================================================= ================== 12 29 95.4 38 GTATTTCCCGCGTGCGCGGGGGTGAGCGG # Left flank : GGGTACTGCATCGCAAAACTGGATGCAGACAAGCCGGATCAACACTGCCGAAGCAGCACGGCACCGTAGCGAAGGATTCTTGCTATTGCGGGCAGCGAAACCCAACCCAGCTGGAGGGCCATTCAAGAACTCGCTGTACCACTACCCGTTGGTCTGGGCCACGCTCACTGCATATTGCGTTGGCGATCAGGCCAGGATTGCTGACCTTCTTTCTCAATGTCGGCAGATCGGAGGTCGGCGCGGCGTAGGATGCGGTCGGGTAGCCGGATTCTCGGTGGAAGTCGTTCCAGAAGTCGAATGTACCTGGGCCTTGCGGGCAATGCCGGATGACAGCGAACAAAGCATCCTCTGCGGAGAGTATGCACTCGCAATGTCGGCTCTCCAGAGTCCATATTGGGATCGCAGTCTGCACAAGCCGGCGCTTGTGCCCACCAGTTTGGCTTAACCATGCAAGTTACCAGATGTAGTGTTCGCACTATGCGGAAGATCAATATCTATGT # Right flank : GGATTCTGACGAACGTCATATGAGTCAGCCGATGGGTTCCCCGCATGTGCGGGGGGTGAGGTTGTTGGATTCTTTGCAGGTCAGCGTTGACACAGGTCTGGCTGACGTATAGCTACACCAACGGATCAGGCAGGAGCAGTACATGCACCCATCTATCGGTCGGCTAAACGGTGGCAAGTTCTACAGCTACCTGAATGGCTATCACGCCGAGCCCTTCGTCGGCTCACTGGAAGAAGTCGAAGTAGCGATGGGCCTTCGGACTCAACCGACGCCATCACCTGCTGAGCCCGCCGCTGCCAAACGCAAGTGCTTCGACGTGACCATGCGCTTTCAGTACCCGGCCTGGGACGAGGTTGATGGGATCGTGTATCGGTCAATCGAGGCGGACAGTAAAAGCGAGGCGAACGCCATGGCCAAGAGGATGGCAGACCAGGATGGCCACCTCGCAGGCGGCAAAGGGCGCGTGACGTTCAGTGCATGCGAGCAGTAACCGCCTAGCT # Questionable array : NO Score: 2.58 # Score Detail : 1:0, 2:0, 3:0, 4:0.77, 5:0, 6:0.25, 7:-0.44, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTTCCCGCGTGCGCGGGGGTGAGCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 1 396747-394057 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMVM01000001.1 Pseudomonas stutzeri B1SMN1 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 396746 32 100.0 34 ................................ TTTGCGCAGGTCGTACCAGACCAGCCATAGCCCG 396680 32 100.0 36 ................................ CTGTGCAGCGCGTCCAACCGCGCCCGGCTCCTGTTG 396612 32 100.0 38 ................................ ACATTCCAAAATTTGAGGTAGCGACATGGCCCGTAAGC 396542 32 100.0 34 ................................ CACTTCTCCCAATAAAAAGGGGCGCGGTTTGACC 396476 32 100.0 34 ................................ TGCTTTTGGAGGTGCCGCATGAACCCTCTCCAAC 396410 32 100.0 34 ................................ ACCTGCTGCTCAACTCCTCCTCGCCCGTTCCGTT 396344 32 100.0 34 ................................ CTGGCCGGTGACGGCGCCCTGGTAGATATCGACG 396278 32 100.0 35 ................................ TGGCATACGGTGTCGCCGGAGATCGTGCCGATCAT 396211 32 100.0 34 ................................ AAGAGCAAGTACGCCGACTTGGCTGAGATCCTGA 396145 32 100.0 34 ................................ AATAGTAGCCTTGTTGTTGACGGCATCCTCCGTC 396079 32 100.0 34 ................................ AAGGCAAGCCGCCAGATCCTGGACGACTCGTCTG 396013 32 100.0 34 ................................ TTCTAGAGACTGTCGAAACCTACGAACTGGATGC 395947 32 100.0 35 ................................ ACCTAACTCATGAAGCGCCGTATCGCGATGAAATG 395880 32 100.0 34 ................................ ACCGAACTGGTGGCGGAGACGAAGTGTGAGACGG 395814 32 100.0 34 ................................ TTAGTCTCTTCCTCAACCAGCCCCATTCCACCGA 395748 32 100.0 37 ................................ TCCCATACGCCATGCGGCAACACCCCGCGCTGGCGCT 395679 32 100.0 34 ................................ ATGGTGAAGTCGCGATGCAGTTTCGAGTGACACG 395613 32 100.0 34 ................................ TGGCCGTCTCGCACAGCCTTTGCCAGCGCCTCGA 395547 32 100.0 33 ................................ ATTTCGCCGGGGTCGCCCTTGAACTCGCTAGAC 395482 32 100.0 34 ................................ AGGTCAGCCGCTTCGGTAATCCTGAACTCCGCCC 395416 32 100.0 34 ................................ TTTGATGGTGTTCAGGGTTTTGCCGTTGCCTTGC 395350 32 100.0 33 ................................ AGCGCGTACAGGCCGCAGACGGCCGCCCCGATC 395285 32 100.0 35 ................................ ATCGACAACGGCACCATCCGCAGCACCGCGGCGCC 395218 32 100.0 35 ................................ TGGATCGTCGACGCCGACGCGGTGCCGGCCGATCG 395151 32 100.0 35 ................................ TGGGCAGTGGACAAGCCCATGCACCCGTCCCTGGT 395084 32 100.0 37 ................................ ATCGCGGCGAGCATCGACCAGGACAGCCGGATCCGCT 395015 32 100.0 35 ................................ CAGTAGGCCCTACCGTCCTTGATCCCTGCCACATA 394948 32 100.0 35 ................................ CTGTGCCTCTGCATCTGCTTTCTCCGTTGCGGCCT 394881 32 100.0 37 ................................ ATGGGATCACCGCTCGAAGGATGTGAGGCCCGACCAT 394812 32 100.0 34 ................................ CTCGAGTCGGGCACGCTGCTGGCGGTCTACTCGG 394746 32 100.0 35 ................................ AACGATAACCTGACTCGCATTGGTGAGGCCTCTAG 394679 32 100.0 33 ................................ AGGATCGTATTCGCCAGGGCTCGCATGGCCTCC 394614 32 100.0 33 ................................ CTCTTGCGGTTGATTAAAAATGCGCCCCACTGC 394549 32 100.0 34 ................................ GTTCCGAGCAGAACGACATTGCCCGCGAAGCCAA 394483 32 100.0 33 ................................ GATCTGTTCATCGCGCCAGGCGTCGCCGTGGTG 394418 32 100.0 35 ................................ TAACCGCCCAGGGGTTGAAGCGCGCCGACGCGGAG 394351 32 96.9 34 .................A.............. CCCGCACCTCGCCCTTTTCCAGGGTGGCGCGCAC 394285 32 100.0 34 ................................ TTCGAGAGTGGGCACCGTCGCGCCTCCTATGTGA 394219 32 100.0 34 ................................ GGGGTCCACGCGACGGTACGGCCGTTGGGATACA 394153 32 96.9 33 .................A.............. CTTGTGGCTCTGTTGTTGGCGATCAGGGGGAGC 394088 32 93.8 0 .........................A.A.... | ========== ====== ====== ====== ================================ ====================================== ================== 41 32 99.7 34 GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Left flank : CACCGTTCTTATGGAAATAGTTGAAGCCGATGATGATCCTGGTCAGCTATGACGTGAGCACGCAGGAAACCGGTGGTGACAAGCGCCTACGTCGCCTTTCCAAAGCCTGCCGTGATTTCGGGCAGCGCGTGCAGTACTCGGTTTTTGAAATAGAGGTCGACGCCGCTCAGTGGACCGTCCTTAAACAGCGCCTGTGCGATTTGATCGACCCCGAACAAGACAGCCTGCGTTTTTACTACCTCGGCAGTAATTGGCAGGCTCGCGTCGAACATGTCGGTGCCAAGCCAGTGCTCGATTTGAATGGACCGCTGATTTTTTGACCCAATTGCGAACCCAAAGCGACCGATGAAACCCGAGAGGTTCGCATGCTACTAACCTATTGAAATCTTTATTTATTTTATTTCCCGGCCGCCGCCTGGACCCACAGATGTGCCTCGTCGACGCCGCTTCGCAAAATGCCCAGTTTTTCTTCACCTAGCACAACGGGTTATAAACCCGTG # Right flank : ACCTTAATGGCATTCCTGGCGCAAACCGGCCAGCATCGAGCTCCACGAAGACACCCACAACACCGCGGAGGGCGCCGGCGCCGCCGCACTGGCTGCCGCCATTCAGGAACGCGCGCTTAACACGGGGGAACGCATTGCCGTCGTGCTCAGCGGCGCCAACATCGATCGCCGTGTGCTGGCGGAGATACTGGCTGACCACGTGCGGTGTTCCGACTGACGTGTGCGATGCCTGCAAGGCAGAAGGCTGCCTGTTAAATCAGGAAACGAGTCCGTCGCCGCAGGCAATTCCCGTCTGGCCTGCGCAACGCCATACTCGCGCCCGCCCGGCTCAGCGTGCGCCTGCGAGGCGCCGGCCGGGGCATCGATCGACAGACAGGTAGGCATCATGCAGGTAGCACATCCGGAAACGAGCCGCAGTCGTCTCGGCCAGTTCATCGAACGGCCAGCGTTCCAGCGCGGCATTCTGCTGCTCATCGTGATCAACGCGGCGATTCTCGGCA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.90,-10.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //