Array 1 6691-5401 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARRG010000009.1 Listeria seeligeri strain FSL L7-1560 NODE_9_length_98488_cov_82.009542, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6690 36 100.0 30 .................................... TGCGCTAGCGGATATAACGGCAAGCACCGC 6624 36 100.0 30 .................................... ATTGGGCATGTGCGCAGTTTGCGTTTTCGT 6558 36 100.0 30 .................................... TACTTAATGCAATCATTAACTACCGTTTTA 6492 36 100.0 30 .................................... CGACTGCGGAGTCGCCCGCGGATTGGGACG 6426 36 100.0 30 .................................... AGGAATTAGCGCGCTAAATAACGAGTTGCG 6360 36 100.0 30 .................................... TCAAAACATTATTATGTCGTCCGAGTACAT 6294 36 100.0 30 .................................... TTATTTGCTGATACATGATAGATACTGAAC 6228 36 100.0 30 .................................... TGGAATTTGATGGGAAACATCAAGTAATAC 6162 36 100.0 30 .................................... TGCTATTTTTGCAGATGCTGCACTACTTAG 6096 36 100.0 30 .................................... CACAAGCACAAAAGGATTTAGTGCTTAATA 6030 36 100.0 30 .................................... CTTTGATAAACAAGAACAATTAGTCTATTT 5964 36 100.0 30 .................................... GAAACGTCGTGAAATGCTAATTAAGGTAGC 5898 36 100.0 30 .................................... TCGCTTACCTCGTTGTTCATGTCCCACAGT 5832 36 100.0 30 .................................... TACCTTTTGCTGCTTCATAGCTTGTTTCAT 5766 36 100.0 30 .................................... GTAAGTTTGTGCATTTAACAGCTTTGTATA 5700 36 100.0 30 .................................... ATGATTCTGCAAAAAAAGAATTAGAGGACT 5634 36 100.0 30 .................................... TGGTGCAATAATAATTTCTTTGTCCCAAGT 5568 36 100.0 30 .................................... ATGCTTTGGCCAATCAAGCTAATTCTTATA 5502 36 100.0 30 .................................... AAAAGATAGTTTGGACTTTCCGGAATTTTA 5436 36 94.4 0 .....................A...A.......... | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : TGATAAGCTGACTGCAACAATTAGCGAGTTGATAGGTTACGAGCTATTGGAGCACGAGCTGGATTTAGAAGAAGACGAAATTACAGTCATTGAATTATTCAAAGCTTTAGGGATAAAAATAGAAACAAAAAGCGACACCATCTTTGAAAAAATAATTGAAATTGTACAAGTTTATAAATATTTATCAAAAAAGAAGCTGTTAGTTTTTATTAATGTATGTGCTTATCTTACAAAGGAAGAATTGTTAGAACTAAAGCGGTATATTTCTTTAAATCAAGTGAAAGTTTTATTTATTGAACCTAGAAAAATAAAGGAAGTTTCACAAATAGTTTTAGATTTAGATTATTTTTTACATGTGGAAAATGACGTTTAAGAATCGAATGCTCTTTGAAAATAAAATATATTTTATTTAACCCATTAAAACAGCATTCAAAATTGAAATCTTGCTATGGATGAGTAGTGCGATTACGAAATCTTAGAGGATAAAAAAATCCTACGAG # Right flank : AGAGAGGGTGAACTACAAAAGTAATATCCTTTACATCTGTTTTTTTTCTATATATAGTGGTAAAACTAGTTGGTTTATGTTATAAATTTTCTACAAAAAGATCACCTCGTTAGTTTGTTGTTTTGTCACTTCTATTCTAACAAAGGTGGTCTTTTTTGTGTATTAAAAAATGGATTTGATTATTCCTCTCAAAAAGAAATTCTCAAATCCATTTTTCTACTTACTAGGATTTATGTCCCAGCCTCTTTTTCTATACGGACTGCTGCTTAAAACAAAACACCGAAGCAATTATCAATAACACAATCGCGGGAAAAGCTAAAAGCGCAGTAATGGCAAAGCATGCGCATCCGATTATTCCTAAAATATGACCAATAATAGAAATCCCGGCTTTTTTAGATTTAACTAAACCGATAATATGAATAATAAGTCCAATAGCGGCCATTGCATAAAAGAAAGCACCGACTCCGCTTGTTTGTGATCCATCTCCGCCTGAGAAACTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 84909-85321 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARRG010000004.1 Listeria seeligeri strain FSL L7-1560 NODE_4_length_242102_cov_74.927400, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 84909 29 100.0 35 ............................. AAATTAACAATTAATGAAAGCATCATGTCTACATC 84973 29 100.0 37 ............................. CTCGACGTTCCCATAAAATTATCAAAAGTCGTTCTTT 85039 29 100.0 36 ............................. AAGTATCTCCCACTTTATAATCCCGATCGTTCTTTC 85104 29 100.0 34 ............................. CTGTGTCATGAATAGCAGAATAAGAGGCCCTCGC 85167 29 100.0 34 ............................. CTTGGTTGGTGGGACTATAATAGTATGTGCCTAA 85230 29 100.0 34 ............................. TTTTTTTCAGATATATGCAACAAATGAATTTCTC 85293 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ===================================== ================== 7 29 99.5 35 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTCATTGCCTGCGCAACCCATTCGGTTATGGCCGGAAGCGCAACTGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCCGATTCCATTGATCTACCAGAAGATAAACAATTTGATAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTATTTTAAGAAAATCTATAAGCAGAGACTCAAAATTGGGTCTCTGCTTTTTTGTGCGTTAACATCTGTCGACCGTTAGTAGCGTAGAAAACAAGGGGAATCGACAGAACATTGAATTCCTTTGTGGGAGAATAGGTTTGGTAGGTTTTGAGTTATGAAATTAAAGTTTGGTGCTTTGATTTTAAGAGGTTTTTTGGAGGTCGACAAAAATAGGCGCTTGAGGTAAGATTGGAGTAAGAGGAAAAGTGAACGG # Right flank : TGTCTCCCAGTCCACTTGCTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAACCATCAGAAAAACACCAAAGAGGAGGAAACACTCATGAAAAAAGTATTTATCCCGCTACTTTTTCTACTAATCCTACTAGCTAGTTGCTCCGCGCCTGATGAAAAATTAACAAAAGACACCAAGATTTTTAAAGAAGGCGTCATCAACGCGGATTATCAGGTTCCAAAAAACCTAGCAGAGCTTGAATCGAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAATTGGTAAAGGAAATAACACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCAAATCAGGTGCGACAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGAGAATACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTCAAGAGTATATCTTGTTTTTAAGTGGAGGACATGACGCGGATAAAGTAAGTTCTAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 91556-92038 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARRG010000004.1 Listeria seeligeri strain FSL L7-1560 NODE_4_length_242102_cov_74.927400, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 91556 29 96.6 34 .......C..................... AAAGCCGAATAGGCTTATTTTTTTACGACAAATA 91619 29 100.0 37 ............................. CCCGGATAGCAATATTGTCCGTGACGCTTTGAATTAT 91685 29 100.0 35 ............................. TCGTTCTGTTCAGCGTGTCAATACTCGACTTGAGC 91749 29 100.0 35 ............................. TAGCATTTGCTTTAGTTAGTAAATTTTGCTGAAGA 91813 29 100.0 37 ............................. ACTACTGATTGCGCCTTCATGGTATGATCGTATAAAG 91879 29 96.6 36 ..........................C.. CCTGTCCCACCGACGACGAGCGCATGCGGATTAGCA 91944 29 100.0 37 ............................. GTGATCACAGCGTTCTTATTGCCAGCTGGTGAGCCCC 92010 29 72.4 0 .......C.G.....CA.....CA...CC | ========== ====== ====== ====== ============================= ===================================== ================== 8 29 95.7 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : AAAAAGTAACCGTTCCATCTTTTTTCTCTTTTGTATCCGCTTTGCTCGTTGTTGAATCATTCCCACAGCCCGCAATCAAAAGTAAAGCGCAAAACATCACCATCAATTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATAAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCTGAGTGAGGTATTTGTTTATAGGATAATTTTAGCATAGATAGTAAGCGTTTACAAATTTGCGCAATTTCTGTCGATGTATGGTAGCGTAAAAAGTACTGGAGACCGACAGATTTGCGGGATGCATTGGGAGAGAATGAAAGTGGGGGATATTTGGGTTTTGAATAGTAATATTAGGAAGTTAAAAAGTCGATTTTGAGATAGGTCGACAAAAATAGCCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : CCCACCCACCCTCAACCTCCCATTTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAAGAGTGGGGCTCTATAACTATAATGAACATAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGGAAAAATAGAAAACGGAAAAATGGAAATATTTAATCATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCAGTTGTGTTGTGGGACTTTTAATGCTTTTAGTGGGGTGTGGAAGTGAAGAAGCATCGAGTTCAAAAGTAGAGTTTTACACGGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGGGGCGTTGGGTTTAAAACTGTAGGATATACGGATGTGACATCTTATGAGACAGCGGTCCAACAATCACTTGATAGCGAAAAAGCACCAGGATTATTCACTTGGTGGAGCGGGAAT # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //