Array 1 64511-63525 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_PNHP01000004.1 Anaerococcus hydrogenalis strain UMB0204 ERR1203615.17957_1_27.4, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                        	Insertion/Deletion
==========	======	======	======	================================	=======================================	==================
     64510	    32	 100.0	    36	................................	TTGTTGTAAATATAAAAGCAAATTGTTTTAATTCGT   	
     64442	    32	 100.0	    37	................................	TGTCTTAGTCTGTCGTAACAAAACTAATTGATCAATA  	
     64373	    32	 100.0	    36	................................	AACCCGATTGTGAATCAGGCCAAGACGCCGCTGTTT   	
     64305	    32	 100.0	    38	................................	AAATTCTTCTTCTGTAACTTCTTGTCCTTCATATTTGT 	
     64235	    32	 100.0	    36	................................	TATCTTTCTTCAAAAAAACTTTATATCCACCTTCGT   	
     64167	    32	 100.0	    36	................................	TATCTTTCTTCAAAAAAACTTTATATCCACCTTCGT   	
     64099	    32	 100.0	    35	................................	TCCAGTTTGCCAATGAGTGGCCCACTTCCCAACCT    	
     64032	    32	 100.0	    35	................................	CATCATCTCCAACATATTTTGACCACTCGTATTTA    	
     63965	    32	 100.0	    36	................................	AAAGGATTGTTTATGCCGGTAATAAATCGCTGGCTG   	
     63897	    32	 100.0	    39	................................	TGGGCTAAAAGTATTTGTATTTATCTTAGATTTGTATAT	
     63826	    32	 100.0	    36	................................	TTAATCTATCAAAGGTATTGTCATCTTCCGTTTCTT   	
     63758	    32	 100.0	    34	................................	TTCATAATTTTTTCCGACTTGATAAGGCTTATAT     	
     63692	    32	 100.0	    36	................................	GTTTGTTAATAGCCGCCCGCTTCGCCCCCGGCGCCT   	
     63624	    32	 100.0	    36	................................	GGTATTTAGAGGAGAAATAAGCCCATCAAAAATTAT   	
     63556	    32	  87.5	     0	.C.....T...T..........A.........	|                                      	
==========	======	======	======	================================	=======================================	==================
        15	    32	  99.2	    36	GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	                                       	       

# Left flank :   TTTACCACATATCCAAGCACAGCTTTTAAATAGTTATTTAAGAGAAGATATAGAATCCTACCCACCATATCTAAGGAAGTGATAAATGCAAGTATTAATCACCTATGATGTAAAGACATCAAGTAAAACAGGAAATAAAAGATTGAGGCAAGTAGCAAAAATATGCACGAATTATGGACAAAGAGTACAAAATTCGGTTTTTGAATTGAATATATATCCTTCGGATTTAGTTAAAATAAAATCTCAATTAAAAAAAGTTATAGATTTAGAAGAGGATAGCATAAGAATATATAATTTAGGGAAAAATTGGGAGAGAAGGGTAGAATCATTAGGTAAAGATGAAACATACAACCCTGAAAAAGATTTATTAATTATTTGAGATACCTGTTTGAACATACAATAAGTTTACCTATCTCATATATTTGATAAAAATTAGATAAAAATTCGTAAAAATATAAGTATAATTTTTAAAAAAGTCTTGCAAAGACTCAAAATTTGCA
# Right flank :  CGAAATCTTTGTCTTTAGGTGAAATTTTTGATTAGCTTACTCATTTCATTAGATTAGTTGTTTAAGTTGTTTTAGTATTAGAAAATATAAAAATATAAGATTAGTTTGAATCTTAAATTTTTGATATTAATGTAATTATAAGAAAGGGGTATTATGGAATTTATTGAACTTGTTAAGAATCGTTTTTCTTGTAAAAATTTTTCTGATAAAAAGGTGGAAGATGAGAAGCTTGATCTTATTCTTCAGGCTGGGAGGTTGGCTCCTACTGCTAAGAATAATCAAATTCAAAGAATTTATGTTTGTAAATCTGATGAGGCACTTTTAAAGGTCGATGATTTAACTCCATGTAGGTACAAGGCTCCTCTTGTTCTTCTTGTTGCCTATGATGAGAGTGAGGCTTTTGTTTATCCTGGTAGAAAATATAATTCTGGGGCTGAGGATGCTTCTATTGTTGCAAGTCATATGATTTTGGCTGCAGCAAGTCTTGGGGTGGATTCTTG

# Questionable array : NO	 Score: 9.22
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         R Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     F [9,6] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 93% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-5.80,-5.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [4-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [71.7-80.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.74,9.41   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
//