Array 1 20195-18497 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABJUZ010000012.1 Anoxybacillus flavithermus strain WS5284 12_63489_22.5833, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 20194 37 100.0 35 ..................................... TAAAAAATAACGACTGGACAATAAAACAAGCAATA 20122 37 100.0 36 ..................................... AGCATCATCGCGTTGTCTTTTATTAGTTGCTCTATT 20049 37 100.0 35 ..................................... ATAAAGACGTTTATTCTTTACCGGGCGTTTGGCTT 19977 37 100.0 40 ..................................... GATGATAAATTTTTGTGCTTATTGACGGAACAAGTATATA 19900 37 100.0 35 ..................................... GCATTTATGAGCCTTCTCAATGTTTTTTTAGCCCT 19828 37 100.0 34 ..................................... GAGTGTTCGTTTTCAAGCGAACATCTCGGTCAAA 19757 37 100.0 40 ..................................... AAGTCCTCTTTTTTTATAATCTCCTCCGCTGGCTTAATAA 19680 37 100.0 37 ..................................... ACGGTGCGATGCGTCATCTACAAGAACGGGATGAAGA 19606 37 100.0 35 ..................................... TTGATTCAGCTTCAACAAGTTTATCCTGATCAGAT 19534 37 100.0 35 ..................................... CATAAAAGCGGAACATCAGACACCCGCGTACCCGC 19462 37 100.0 35 ..................................... AAAGGTCGCGTCGTTGGATTGACGATCAAGTCTCA 19390 37 100.0 33 ..................................... TATGTATAATTTGCGTGTTGGCATTTCTCCTAC 19320 37 100.0 38 ..................................... GGTAGCTGATCGGGAGGTTGACGCTGAAGTTTTGCGGT 19245 37 100.0 33 ..................................... CGTACGCTTCAACCGTTCGATCTTTGCATAACT 19175 37 100.0 33 ..................................... GCCAGGCTGGTGGCATAATATCAGCAGTCTTGA 19105 37 100.0 36 ..................................... ATACTCATACAACTCTATGACATGCCCTGCTCTTAT 19032 37 100.0 34 ..................................... GACCGCTTGTCCAGCCAATCGTTCAACGTCTTAC 18961 37 100.0 35 ..................................... CAGATCAGCATGCGGAACATAAGGCACGTTGAACG 18889 37 100.0 33 ..................................... TCATCCCCTTTCGCTCCACGCCGCGCGCATGGG 18819 37 100.0 37 ..................................... AAGCATACGGCAAACAATATACTTATTGAGGATAGGA 18745 37 100.0 34 ..................................... ATCATAATCCCTCCCTACATAAACATCATGCGGC 18674 37 100.0 32 ..................................... GATACACGTACATAATAGTGATAACGATCAAA 18605 37 100.0 35 ..................................... ACAAACGGAGAAACCAACTTCTCCAGCGCGGAACC 18533 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 24 37 100.0 35 GTTGCACCCAGCATAAAAGCTGGGTGAGGATTGAAAC # Left flank : TGACATATGATGTTGAGACATTGGAGTCAGATGGTCAAAAACGATTACGAAAAGTAGCAACTATTTGTCAAAATTTTGGACAACGTGTGCAAAAATCTGTTTTCGAGTGTAATGTCAGCCAAGCGCAGTTGGAAGAAATGGAACATCAATTGTTGAAAGTTATTGATCTAGAAAAAGATAGCTTACGAATATATACGTTATATGGTCAACGATCCAAAGCAGTTCGCTCCTATGGAAAGGACCATTACATTGATTATAATGATCCGATTATTTTGTAAGAGTAGAACATATACAATATGTGTAGCAGTTATGAATTTTGGTGCGCGAACATAAAGCAATAGTAAACAATCAGGAGGATCGCGATGAGTAAAAAAGGCTTAGTAAAGCGAAGATCCAAAAATTCATCAGAGACTATCTTTAGCCACAATGCACACCAGACAAAACAGTTCGCGTTTTTATACTTTTACACTTGCTTCACGCATAGGATTGAAGCGTAGGCA # Right flank : TGCAGAAGGAAGTATTGCGTAATAACGTATGTGCTGAAACTGTCGTGCGCATGACGATGTTGATCGTGGAACAATTATCAAATAAGTACATGCAACTGTATAAACATAAACAATATGATCCCATTCGGCAAGGGGATTTGCTTGTACGGGAGTTAGAGGAATATGTGAATATTATAAAATATGGAATTTACAAGTAAAGGCGGGGCTTTTCCCGCCTCATTTATTTGTAAGAAAATTATTGAAATTTTCTGTTTTTATATGATATGATATTCTCAAGGAATTTGAAACTATGTTTCGTAATACGCAACAAAAAAGAAAGGGGAATAATGATGGGGGAATATGTACAAGTTGGACGTTTGCAAGTCGCTAAGTTGTTTTATGAATTTATCGTTGAAGAAGTATTGCCAAATAGCCAAGTAGATAAAGATAAATTTTGGAAAAACTTTGAGCAACTCATTAATGAGTTAACACCAAAAAATAAAGCGTTGCTTGCCAAACGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCCAGCATAAAAGCTGGGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.20,-12.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 1 12341-13042 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABJUZ010000007.1 Anoxybacillus flavithermus strain WS5284 7_72724_27.4706, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 12341 30 100.0 37 .............................. CCTATCATTGTATTAGGTGCTACGTTAAATGTTATGA 12408 30 100.0 40 .............................. TGAACCTACTCATTCTTTTTCGCCTTCTTCCGTATCTTTT 12478 30 100.0 39 .............................. CGAAGTACATATATCATCGCTTCTTCCTCCTTGTCGTCG 12547 30 100.0 36 .............................. TATAAATCACTTGCTTGTACGTCTATGCGTCCCTCA 12613 30 100.0 38 .............................. TTCATTCCCCTTTCTCATAACAATCGCAATATCAATTC 12681 30 100.0 35 .............................. ACTTTCATAGGGTTATTTTTTATCATTGCGTTAGA 12746 30 100.0 37 .............................. CTCATTGTTTTAAAACGGAATATCTTTTGATACACTA 12813 30 100.0 34 .............................. CGTCAACAATTTTTTTCTCCGTGATCGCTACAAA 12877 30 96.7 40 ...........G.................. ACAATACGAGCAGCACGATATTTACCAGATTTCACAAGAG 12947 30 96.7 36 G............................. CCTAAATGTATATAAAGAAACTTGTGTCCATAATCA 13013 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 11 30 99.4 37 ATTTGTATCGTACCTATGAGGAATTGAAAC # Left flank : TATTGTTTGGCTTTTTTGAAACATATGTGAAATTATCAGACGAAGAAGAACGAAGACTGCGAAGCGAGGTGAATGAAATGGAGACGAAAGAAAAAGAACAAGTGATGGAGTTGATTATTTCGTATGAACAAAAGGCGTTGGAAAAGGGAAGAGAAGAAGGGATAGAACAAGGAATCAAACAAGGAATCAAACAAGGGATGAAGCACCTTGTACAAACGATGGCCAAAAAAGGGATGAGTGTAGAAGATATCGCAAACATCACAGACCTTGCGGAAGATGAAGTGCGTGAGTTGTTAGAAAAGGAATAAGTAATTTGCGCATAATTTCACAACCGTCGTCGACCTCCAATCTTGCAAAAACCCCAGGGGATCGACGACAATTTGTTTTTTGCAACTTTTTTAGACGTATCAACGCATCAAGACGATTGACAGAATTTTCGAATGTATGTATAATGACATTGTATAGCTTTTCCAAGTATTGATTTATCAGCACTTTTTGGG # Right flank : CACCTTTGTAAAAATTCTTCAATTACTTGAGCTTTTTCGTTTGGTTTGTATCGTACCTACAAGAACCAGTATGTTAGGGTCTGGATTTTTTTGTATATACCATTTTACTTTTTCTTTAACATTTGTTATAATATAAGGTAGAGAACATCTTTCTTTCCGATTATGGTAAAGTGAGATGTTTTTTTCGTGGAAATATTGATTTCACAAAGAAATGGAGGGATTTCTGATGAAGAAATACGCCATTGTGTATTGTGAACATCAATTTGGTTCCATGGATGGAAAAACAGCGAATGGGCTTGTGCGCGATTCAGGGCTGTATGAGATCGTTGCAGTCATTGATTCGACAAAAGCTGGTCAAGATGCCGGAGAGGTGCTTGATCAAAAGAAAAATGGCATTCCGATTTGTAAAAACCTTCAAGATGCAATAGCCTCCGCAAAAGAAAAACCGAACTACTTCATCTTAGGAATTGCTCCAGCGAACGCTTTTCTCAAAAAAGAAG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTGTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 9017-8076 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABJUZ010000020.1 Anoxybacillus flavithermus strain WS5284 20_37890_25.2697, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================================================== ================== 9016 30 100.0 38 .............................. TATTATATCATCGGTTTTATTTTTTGTCAATGTATTTT 8948 30 100.0 37 .............................. ATATGATCGCGAATGGTCGTCCAGTCGGTGAACTTGC 8881 30 100.0 39 .............................. TCGCCACAGTCATGACATAGCAAACGATCCGCGTCATGC 8812 30 100.0 40 .............................. TCTTCTAATAAACTTAAAATTAAATCCCTGCGTTCTTTAG 8742 30 100.0 35 .............................. CTCCATAACATCATCCGAAACATTCATTTGTTTAG 8677 30 100.0 37 .............................. TTCGTAATGTTTCCGATGGGTTTGAGAATGTCGGCTC 8610 30 100.0 39 .............................. ATGCTTTCAGCAACCCAATGACTGTTTGTGCTGTAGCTG 8541 30 100.0 38 .............................. TACCTATACTCTCCGGGATCGCCGCCGGGTTTGCGGTA 8473 30 100.0 36 .............................. AGATCATATCCCGCTTAGCTATTACTTTTCTCCGCA 8407 30 100.0 39 .............................. AGCGTAATGTTTAACGCTTTTTCCTTCTCGAGTGGGAGA 8338 30 100.0 38 .............................. ACAATATCAAGCACCGTCATTGTCATTCAGCTGCCTTT 8270 30 100.0 38 .............................. TTATAAAACCTGGAAGCGTTTCACGCCGACGATTTGTC 8202 30 96.7 68 .............................T ATCAATAAAAAATACCTATGAGGAATTGAAATATCAATAAAAAAATGTTAGCCAAAAAACATTTTGAT 8104 29 83.3 0 ....T............A....-..A...A | ========== ====== ====== ====== ============================== ==================================================================== ================== 14 30 98.6 40 GTTTGTATCGTACCTATGAGGAATTGAAAC # Left flank : ACGTTGGATGGAAAGAAAAAAACACAGTTTTTTGATCCGGACGACGAAGTGTTTTCACATTTAATAGAACGGAATTTTTATAACAAATATGAAGCATATTACGGTGTTCCACCAAGCGATCGGCTACTCATCGAACCTGTCGATGTTCGAAAATGCGATCGGGTCGTAACGAGCTTTAAAGGCTTTTACATTACAGCGTGGAAAGGGCGGTATAAGCTCATTTCTTCTCCGGAAAATTTAACGTTTTTGTACCGTGTAGGTATCGGTGGACGAAACTCACAAGGATTCGGCATGTTCCGCATCATAAAAGAAAAGTGAAACATTTCACAGCTGTCGTCGACCTCCAATCGTGCAAAAACCCCGGGGGATCGACGACAGTTTATTTTATGCGAATTTTTTAGTGATATCAATAAATACAGAGTATTGACTGAATTTTCGGATGGATATATAATAGAGTTGTATAGCTTTTCCATATGTTGATTTATCAACGCTTTTTTGGG # Right flank : AGCTGTTCCGAAGTGTTGTTCGGAACAGCTTTTTTGTTGTCTATACGTTCCAGAGACCTTTCTTTTGTTGGCGTGCTTTTCGTTCGGCTATACATCAGTGTATGAACATTTGTTATAATGTATTTACACGATTATTTCCTTTATTGACAATGATAGATAGATAATCCTTTTTCACTTTTATTTTTTTAGATATTTAAAAACGTGATAGTGAATTTTGTCGAATTTATTCACACAAACGTTATATAATAGTAGTAAAATAAAGGAAAGATAGAAGCTGCAGGAGGTAACACCATGGATTCTATCCAATTTCAAGATAAAGTGTCGTTTATATGGACAAATGCAGATTTATTGCGCGGAGATTATAAGCAATCGGAATACGGAAAAGTGATTCTACCTTTAACGGTGATTCGGCGCATTGATGCGGTGCTAGAGCCTACGAAGGAAGCGGTTCTTTCCCAATTGGAAGAATTAAAAACGATGGGAATGACGATTGAAGACGG # Questionable array : NO Score: 9.02 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:-0.16, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 18637-18006 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABJUZ010000020.1 Anoxybacillus flavithermus strain WS5284 20_37890_25.2697, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 18636 30 100.0 39 .............................. GAAGCTTTTGACTATGACTTTGACTTGCTGATTGATTTT 18567 30 100.0 38 .............................. TCAATTACATACAGTATTTTAGCGTTAATCTCTTTTCG 18499 30 100.0 35 .............................. ATAAGACGGGAGGACAAGTATTTTTCTGCGCGGAC 18434 30 100.0 37 .............................. TAATCCTTTTTTCGTCTGTTGCGTCAAATACGGGCGC 18367 30 100.0 36 .............................. CTTTAATACCTAGACCATTAATCATTTTCTCAATGT 18301 30 100.0 37 .............................. TTCTCCAAAGCAAGTATACAATCTTCAACATCAATCA 18234 30 100.0 37 .............................. TTTGCCTAAATCGACAAACCAAGAACCGACATTTGAA 18167 30 100.0 35 .............................. TGAATAAGTGGATAACATCATCGTCACTCTCAAGT 18102 30 100.0 37 .............................. ACGACATTTGTTCAACTTTTTCATACCATATTTACAA 18035 30 80.0 0 ......................G..TGCCA | ========== ====== ====== ====== ============================== ======================================= ================== 10 30 98.0 37 GTTTGTATCGTACCTATGAGGAATTGAAAC # Left flank : GATGCTATGGATGACATTTATCCTTTACTTGTCCGCTTGTTTCCGATGAAAAAAATAAAGGACAATCAAGTCGATGAATTTGCTCGCTATTTAATCATTAACTACCATTTTGGAGTTCATATTATTCATCGTGATTATGTAAGAATATGCTATGAAATTCGCTCTAGAGATCGTCTTGTTTGGGTAAATATAGAAAACAAAAATAAGAATTCATGCACATATGTACAAGGTGATTTGAATTTATTTGACGAAGTGTACCATATTTATATTGAATTTGAACGTATCATAAGTAAAGTACTGTAAAATCTACTTATTGTGAATTTATTCACAACTGTCGTCGACCTCCAATCGTGCAAAAACCCCGGGGGATCGACGACAGTTTATTTTATGCGAATTTTTTAGTGATATCAATAAATACAGAGTATTGACTGAATTTTCGGATGGATATATAATAGAGTTGTATAGCTTTTCCATATGTTGATTTATCAACGCTTTTTTGG # Right flank : TTGTGATCAGTTTTATATTTACTTTGTAATGTTTTGTGTTAGGGGTAGTTTCCTTAATTTCCTACTAATCCTTTTTATTTTTTAGAGCGCTGGTCAGCTATCCTCAACCTCTGTTTTTATGTTACTTATTTCAAAGAGTTATATTAATTTAGAAGGAATATATTCCTTTTATGTCGTATTTTATGGTAGGTTAGTTTATTTAGAAACGAGGTGTGATTTTGCTAGCAGAAGCAGTTGTTCGAGTAGGCGAGTCGCTTGTGAGTAGTGATTTACCTTTAACGGAGCGTATTCGTTTGTTAACGGATGTAGATAATGAAGCTTGCAAGAATTTTTTTGAGCACGTCTGGGTTGTGGAATGCATAGAGGAACAAGTGAACGTTCGTTTGATGAGAATAGGAGAAAAGGTGAAGGAAGGTAAAAAAGAAACGTTTGTTGTTGATAGAGCTAAAAACGTTGCCTTTCCTATCATTTATCCTAATGGTGGGAATCCGCTAAATGCC # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 33900-32379 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABJUZ010000020.1 Anoxybacillus flavithermus strain WS5284 20_37890_25.2697, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 33899 30 100.0 38 .............................. TTGTTGGCCATGATAAATATTCACTAGATGGCTTTTAT 33831 30 100.0 35 .............................. CTTCGGATGCTGTCATAACTTACGCGGTATATTAC 33766 30 100.0 35 .............................. ATGCAACTGGAAAATGCAAATTTGCGCCCTCGTAC 33701 30 100.0 39 .............................. GTAGTCGCGACTATTCTGTTTTGCCTCATGAAATTTACG 33632 30 100.0 39 .............................. TCTTTTGCATCCGTGCTCCCAGCCGTACTGGTCGCAAAC 33563 30 100.0 36 .............................. TTTTGTCAACCTTACCATCGCCACGGAAATAACCTT 33497 30 100.0 38 .............................. AATCTTTTTGGAAGAAGTTTTTTAAGTTTTGGTATTGG 33429 30 100.0 40 .............................. ACCACAATAATCGCCATCATACACACTGATCATTTCACTA 33359 30 100.0 38 .............................. CGAAACTTATACAACGCGCTCTTATAGGAATGAACGAT 33291 30 100.0 38 .............................. GGCGTATGATTCCGACAGTTCCTGCCGTACGATATATG 33223 30 100.0 40 .............................. ATCAAAACCCAACCTTCTTGTACTGTCCCTGTTGGACTAA 33153 30 100.0 39 .............................. CTGTTGCTCGGCGAACGCCTAATAAATCAGCAATATCTT 33084 30 100.0 37 .............................. TAAGGCATCTCATACATGATTTTATCTAGATCTATTT 33017 30 100.0 39 .............................. AACATGACGATATGCTTGAACGATTTTCTAAGGATGAGT 32948 30 100.0 38 .............................. AATGTATAAATCGGAAAATTGATCTTTTCGTCAATAAT 32880 30 100.0 39 .............................. TGATAACAGTCATACTTGCCCCACACGCACTCACTTCAG 32811 30 100.0 36 .............................. AACAGGACGGAGGAAAGGTTTTTTTTCGGGTCGTCC 32745 30 100.0 39 .............................. ATTAAAATGTGTTGACATGTAGACACACGTGTGGTATTC 32676 30 100.0 36 .............................. ATTGTTGTCGATGTTTATTGACTCTTGTGCTTCTTT 32610 30 100.0 39 .............................. CAACGCTTCTAGCGTATCCACCAATGCGTCAGATTCTAT 32541 30 100.0 39 .............................. CGGCATCACTGCTAAAAAACGAAAATGGCGTTCCTTCTG 32472 30 96.7 34 .............................T AATGGAATCACAATGTTGCCTCCTGCTAGATAAA 32408 30 80.0 0 A.......................A.CGTT | ========== ====== ====== ====== ============================== ======================================== ================== 23 30 99.0 38 GTTTGTATCGTACCTATGAGGAATTGAAAC # Left flank : GAAGCGATCGATGCAACAAAGCGCCCGCTCGTAATCGGAGGTGTATTCGTACTTATGCTTTCATCGATCATTTTCTCCCACCGCGCCAACACATATTTGCGCAAATTAGACAATGAACAGTAAATTCCCCTGTTTTCGTACAAAGAAAAAACATGTAAAATAAAAGAAAATGGGTAAAGGGGGAATAAACGATGATGTGGATGATTACAGGTCTAGTCATTACAGCTGTTATCGGTTTCGTTATTATCGCGGAAGTGAACGCCGAAGCATAAAACAGTCTCTAAACAGGAGACTGTTTTTAATAAAATTTATTTGTGATAAACTTCACAACCGTCGTCGACCTCCAATCGTGCAAAAACTCCGGGGGATCGACGACAGTTTATTTTATGCGAATTTTTTAGCTGTATCAACGGACATAGACTATTGACTGAATTTTCAAATGTATGTATAATGATGTTGTATAGCTTTTCCATGTGTTGATATATCAACGCTTTTTTGGG # Right flank : TTTTGTATTGAAAAGCAGGGATGTTTATGCCCTGCTTTTATTTTTTTGTTACAACTTTCAGAAAAGTATTGCGCAAAAACTAGTTCGTTTGTATCATCAGTAATATGAGGATATTTTTTTGAAAAGGTGGATAAGGGATGAAACTACTAACATTTCTCGGCGCGAATGACTATCGTGAAACAACGTATCGTTTTCGGGAGCGTGTGCATACGGCAAAGTTTTTTCTATCTGTCCTTATTCAAGAACTGCAACCAGGTGAAATATACGTATTTATGACAGATGGGGCACGAGAGAAAAACGAAGCACCGTTGCTTGACGAATTAAACCGATACGGCGTAGATGAAAAGAAAGTGCATGCTGTATGCATTCCCGATGGGCAAACAGAAGAAGATTTATGGAATATTTTTTCTGTTATTGCTGATCATGTGTATGAACATGATGAAATCGTCCTTGATATTACGCACGGATTTCGGACGTTGCCGCTCGTTGGAACAATTAGT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //