Array 1 45416-43730 **** Predicted by CRISPRDetect 2.4 *** >NZ_CQDW01000001.1 Streptococcus agalactiae strain DE-NI-004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 45415 36 100.0 30 .................................... CATGCCTTTGAAAATAAATTCCGAGCCATT 45349 36 100.0 30 .................................... ACTTCATTGATGTTTTGTTCAAATTTCTCA 45283 36 100.0 30 .................................... CAAATTATAGCTAAGTACCCAAACAGTATT 45217 36 100.0 30 .................................... TTGTTTAGCAACATAGTCTAATGTTGCATT 45151 36 100.0 30 .................................... TCTGAGAACCGCAAACCAGTGACAGAAAGA 45085 36 100.0 30 .................................... ATCGAGCTCTTGAGTATGAAGATTATACTT 45019 36 100.0 30 .................................... ATGGCTAATTATTGCGTGATGTTAGCGGTT 44953 36 100.0 30 .................................... CGTAAGCCAGTTCTTTTATTGTGTCTTTAA 44887 36 100.0 30 .................................... AAAATAACATCCCCTACTTTTAAGTTGATA 44821 36 100.0 30 .................................... AAAGTCATCTTTATTGACTGTTTTTCCTTC 44755 36 100.0 30 .................................... TTACAAAAAGTTTTTAGATTACACGCAAGA 44689 36 100.0 30 .................................... AAGACTTAAAATCGATTAGAATTGATTTTA 44623 36 100.0 30 .................................... AGACAAAGAAGATGGCAAGTCTATCAACAA 44557 36 100.0 30 .................................... GCTTGGTCTCGAAGAATTACAGAAGAACAT 44491 36 100.0 30 .................................... CAATTGATTGCCGTTAAAACCGATAGAGGA 44425 36 100.0 30 .................................... TGAATTCCACGCCACCAAGTAAACCTGTGA 44359 36 100.0 30 .................................... ACAAGAAACAAACAGCCTTGATGACTTAAT 44293 36 100.0 30 .................................... CAACCCTATGTTTGATAATATTTTAGACGT 44227 36 100.0 30 .................................... AAGTGAAGTTGAATTTTATTTGAGATACTA 44161 36 100.0 30 .................................... TAATACTTTTACAATATGTGTTTTCACTAC 44095 36 100.0 30 .................................... AAGTGCCACAGTTTGTGGCTGATTGGATTG 44029 36 100.0 30 .................................... CATTCAAGGACTACCCTCAACAGTAACTCT 43963 36 100.0 30 .................................... ATAATATATTATATAATAAATATAGAAATA 43897 36 100.0 30 .................................... TTCTATCTTCTGAAGATATTTCACAAGTGA 43831 36 100.0 30 .................................... TCTTCTTTTTAATTCTTCTAACACTCCATC 43765 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 26 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : ACGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGA # Right flank : ATCTTCTTTTGACCTAACAAAAGGATATGTGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 69690-69263 **** Predicted by CRISPRDetect 2.4 *** >NZ_CQDW01000007.1 Streptococcus agalactiae strain DE-NI-004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 69689 32 100.0 35 ................................ ACAAAATAATAATTACCGTAACCAAGGACAAAGCC 69622 32 100.0 33 ................................ TTGACCAAGAACAACGAAAATCACTCGAAAATG 69557 32 100.0 35 ................................ TTCAAAGAAATCATCGAGTTCAATATCACTATAAG 69490 32 100.0 34 ................................ TGATATTTTGCTCAAGGTCTTTGGCATCCCATAT 69424 32 100.0 34 ................................ ATCATATCTCTATAATTTCCTTTCATATCAACGC 69358 32 100.0 33 ................................ TAATAATGATTATTTTTTTATTAATTCATTATC 69293 31 78.1 0 A....-.............T..A.T..C..C. | ========== ====== ====== ====== ================================ =================================== ================== 7 32 96.9 34 GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT # Left flank : CTAAAGCAATACGTGGTGATTTGGAATCCTATCCACCATTTTTAATCTAGGAGTAAAATTATGATGGTTTTAGTAACCTATGATGTCAATACGAAGACTGTAGCAGGTAGGAGACGCCTTCGTCACGTCGCAAAACTTTGTGTTGATTATGGTCAACGTGTACAAAATTCTGTTTTTGAGTGTTCAGTGACTCCAGCTGAGTTTGTGGAGATAAAAAACGAGTTGCTGACAATCATCGACCAGAAATCAGATAGTATCCGATTTTATTTACTTGGTAAAAATTGGCAAAATCGTGTGGAAACTATTGGCAAAAATGATAGTTATGATCCTGATATAGGGGTATTACTTCTATAAACATTTATATGTGAATTCGGGTCACACATGAAAAAGCGGAGTATTCGCGCTAAAAAAAAGAAAATAGTAGTCAAAATCTAGTTTTTATTGAACCAACTTGTTTAATAAATTCTTGGTTTTAGTTATAAACGGTGCAATCGCGCACT # Right flank : ATTTTAAATCTTTCAAATTATGCTATTAAAATTGTCTAACTTTTAACAGAGATGCGATTAAATTGTATTAATCCCTAAAAAGATAAATTGCTAGTTCTTATGCTATAATAACTCTATCAATGTCAAAGGAGTTTTTATGTCAAAGGTAAGGTATGGTGTTGTGTCAACGGCAAAGGTGGCGCCTCGTTTTATTGAAGGAGTCCGCTTAGCAGGAAATGGTGAAGTTGTGGCTGTATCGAGTCGAACTCTTGAGTCTGCGCAAGCTTTTGCCAACAAATATCATCTCCCAAAGGCTTACGATAAGTTAGAGGATATGTTAGCAGATGAGTCAATTGATGTGATTTATGTGGCAACAATTAATCAAGACCATTATAAAGTTGCTAAAGCAGCTCTGTTAGCGGGAAAACATGTGTTGGTAGAAAAGCCTTTCACCTTGACTTACGACCAAGCGAATGAATTATTCGCTTTGGCAGAAAGTTGTAATCTGTTTTTGATGGAGG # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //