Array 1 267372-268561 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWGJ01000002.1 Clostridium sp. AF28-12 AF28-12.Scaf2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 267372 28 100.0 33 ............................ CCAGGATATGAACCTATATTGTATGTTCCGTCA 267433 28 100.0 33 ............................ CGAGTCTCTGGTTAAGCATCCAGACAAATACCT 267494 28 100.0 33 ............................ TAAACAACTCATCCGTGGTAAATGCCGCCGTGG 267555 28 100.0 33 ............................ CTTCTATTCCATCTTGAATCATTAACATAGTTA 267616 28 100.0 33 ............................ CTGTTTTTGCGGCTGTTTCAGATAAAGTTCTGC 267677 28 100.0 33 ............................ CAGAACACCCGGAAAAATCTACTGTATTATTTA 267738 28 100.0 33 ............................ TGTAAACGCCGAAGTGGCGCTGCGATTGGCGGA 267799 28 100.0 33 ............................ CAACGATTACACAACCTCTCACCAATATAAACG 267860 28 100.0 34 ............................ CCCTACTCGTACTGCCGATCCAGTTAAATATGCA 267922 28 100.0 33 ............................ TCTGTTGTGCCATCAGGGGTATTTTGTACGAAC 267983 28 100.0 33 ............................ CAGCACAGCAGACCGGCGCGGCGGCGAAAGGGT 268044 28 100.0 33 ............................ TATTGCTGGCACTCTTCGAGTGTGGCGAAATAC 268105 28 100.0 33 ............................ CACGACCGCGTAAGGAATCGCGGCAGTGACAAG 268166 28 100.0 33 ............................ TATTCCCCGCATCTAAATAAATGCACCCATCCA 268227 28 100.0 33 ............................ CTAACGCTCTCATTTCAGTACTCCTCCCCACCT 268288 28 100.0 34 ............................ CCATGAGGCGGATCGGATCTCCCGGCTTATACGG 268350 28 100.0 34 ............................ CCATGAGGCGGATCGGATCTCCCGGCTTATACGG 268412 28 100.0 33 ............................ CTTGTCAAATAATTCATTCAGACGTTCCCGTTC 268473 28 96.4 33 .........A.................. TGATCCAGAATTTCTTTCACTGCTCTCGGTACT G [268490] 268535 27 89.3 0 ............T.........-A.... | ========== ====== ====== ====== ============================ ================================== ================== 20 28 99.3 33 GTATTCCCCGCGCAAGCGGGGGTGATCC # Left flank : TCATCAGATGAGATTATTGAGTTGGCGGCGATCAGAATCATTAACCACGAAATTGCAGACCAATTGGAGATTCTAGTAAAAACAGAAAAAGGAGTTCCAAAAGTAATTACTGAACTTACGGGGATTACAGAGGAGATTCTTGAGGAAAAGGGGGTGGTTCTTTCTTCGGCGATGGAGAAGTTCTGTAAATTTATTGGAGAAAGCGCAATAGTGGGACATAATATTGCATTTGATCGTAGCTTTTTAAAGGAGGCTTGTCGAAAGACCAATCGAATGAATCTGAAAAATCCAGCAAAAGATACATTAGATCTTGCTAGAAGGCGAATCGACGATATTGATGATTATAAGCTTCATGCACTGGCAGACTATTTCCAGATAAAAGTTGAGGAGGAACATAGGGCATTAAGTGATTGTATTACGACATTTCAAGTATATGAGAAACTAAATGAAATTTAGCGGCAGAGAGTGGAAAAATGCTGTAAATAAGGGATTCTTTTAGT # Right flank : CCGTATTAAAGCATGGACTCTAAAAAGAAAAATCCACCCTATTGCAATTCCCCGCTATTTTTCATATACTTATAATATGAGTGGATAGATGCAGCCGCTATGTGTTGGGCATTTTGCCTGCCGTAGTAGAACGGGGCACTATCCACTCTTTTATGCTTATGAACAATCAATAGCTCTCACGCGAACTCCCGCAGCAGCCGGATCAGCTCCTTCATTGCCGGAAGTGTCTGTTTTCCTTTCAGCGTAACGATGGAGTAGCTGGTGGTGTCATCTGGATTACCGATCCGGAAGCAGCGGACAGGCTTTGGATAGTGGAAATTTTTCATGTACTGGTAGAAGTTGAAAGCGATGCCATAGCCCTCCGCGGCGAGCTGACAGGCAGATTCAAGATTTTCAAGGAGAAAGACCTGTCCCGGTTCGGCGTGGTCATGAGCAATGGCAAGGTCTGTGTAGTGTCTGGAGGACTGATCCGGCTTTTGCAGGATAAAACGTTCCCCGTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCAAGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCAGGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 29155-30514 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWGJ01000016.1 Clostridium sp. AF28-12 AF28-12.Scaf16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 29155 32 100.0 35 ................................ ATCCCGATCACTGCCAAGATCATAGTCATGTTTGC 29222 32 100.0 33 ................................ ACGTCCAATTGCCTTTCCGGTATTGTATGAGAT 29287 32 100.0 34 ................................ TGATCTGCGCCAGCATGTCTTTTCCGTTTAATAC 29353 32 96.9 34 ..........................G..... ACCCGCTCACTTACAACGGCACCGAGCAGCAGCC 29419 32 96.9 33 ..........................G..... TGGCAGCCCGAGCTTAAAGGCAACGTACCGAGC 29484 32 96.9 35 ..........................G..... ATCACCTCACTTTAGACAGAGTGGAAAACGCGGAT 29551 32 100.0 33 ................................ ACAGATCCGTGCGCTGAATGTGGACGGAAATAT 29616 32 100.0 35 ................................ TACCGGAAGGCGATTTACAGCGCACAGGTATACGC 29683 32 100.0 33 ................................ TGTGATTATATCGTGCAAAATCGATTGCTTCAC 29748 32 100.0 33 ................................ GTTCTCATCCCGTGCCTCCCTTAATGTCAGCAT 29813 32 100.0 36 ................................ AATTTTCCCCGCAGATTCTTCCGGCTTGCAGAACAT 29881 32 100.0 33 ................................ GCATTTTACACCGATTGTAAGATGCTTCGTTCT 29946 32 100.0 36 ................................ CAACGTCTCCAAAAGCTACCAGAGCCTTGATTCTGA 30014 32 100.0 34 ................................ GAATAAAAAATTTATATTCGCACATACTACAAAT 30080 32 100.0 34 ................................ GCATTAAGATTTTCGTTCCGATTATCGCCTATGA 30146 32 100.0 37 ................................ GGCAGCTTCTGAACGATTCAAGCAGATGTGGGAAGAA 30215 32 100.0 35 ................................ TGCTGTGATGTTTTCGATCATTCGCGATCAATTCT 30282 32 100.0 35 ................................ ATGAGTACGTTTGCGATTGGAGCAAGGCAGGAAAT 30349 32 100.0 34 ................................ CGGCTTCTTTATAAAGTTGACTATCCGAGTTAAC 30415 32 100.0 36 ................................ AGGCGCTTTCTGCGTGATCCTCGGCCCATTTTTCAT 30483 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 21 32 99.6 34 ATTTCAACTCACAGCCCCGCAAGGGGACTGAC # Left flank : TTCCTCACGCATTTTATTGATTGCGCATCATCTGAATAATAAAAAAAGCAGATGACGCCAAAACCATCATCTGCTCAAAACGATTCTATTCCATTGGGGTCTGGGGCGCGTCACTCCGCTCCCGTCTGCCTCTGACCTTTATCGTTTTTTCCTCCAAGTCTGCAATCGCAAATATATTGTCCCTGCACTTATTGACCGATTCACAAGATGATGTGTTTTTCAAACACTGATTATAAAGTAATCAACTTATAAATTTGAGCTTTTAACTCAATCAATAATGTGGGCTTAACCCCACGCGGCGCTTGACCCGCCTGTCCGATGGGCTTAACTTCCGTAGTCTGTTCTGCGGGAGTGGTCATTACATACATTTGCATGAAAACGATAAATGTCTCTTCACACTATTTTTATCATACATGAAAAACACGGGAACTGTCAAGTAAAAAATATTTTACCGCAAGGGGGCTGACCAGAGTCAGCCATTTTCCCATCTGGTTCTTTCC # Right flank : CAGCAATTTTAGCCAAAAATATTGCCTGACCAAAATTGTTTTTTGTATTTATTTCACATATTTCTACTAATTTCCCCTCGCACTTTCAGGATTTCCATGGCCTTTAGGCTAAGATTTCCCTGTTTTTTCGGTGCGAATGTCCCGAGGTTTTTCTGTATACATGCTTCTCGCACTATAATAGCAGCGTTTCCGTAACATCAAATCCCGGCTTAGCGCCAATATGTTCTACCTTATTTTTGTATTTCTCACCCAGATAATAGAATCTCAGACTATCTACGTCTTTGTCGATGAGATTTTCAAGTATGTTTTTCACCTGTCTGCATTTTGCTGCATCCATCTGACATTCAAATACAGAGTTCTGCACTCTCTGCCCATAGTTGGTGCATTCCTTCGCCACCTGACGCAAACGTTTTCTTCCTGCTGCCGTCTGTGTATTCACATCATAAGTAATCAAGACCAGCATTTATTCACCTACTTCCAGAAAAACGGCGGATATTCAT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCAACTCACAGCCCCGCAAGGGGACTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.27 Confidence: MEDIUM] # Array family : NA //