Array 1 146117-146754 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDDV02000003.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0032 NODE_3_length_414564_cov_24.653105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 146117 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 146178 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 146239 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 146300 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 146361 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 146422 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 146483 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 146544 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 146605 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 146666 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 146727 28 79.3 0 ...........C...A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 163395-164889 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDDV02000003.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0032 NODE_3_length_414564_cov_24.653105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 163395 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 163456 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 163518 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 163579 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 163640 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 163701 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 163762 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 163823 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 163884 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 163945 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 164006 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 164067 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 164128 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 164189 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 164250 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 164311 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 164372 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 164433 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 164494 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 164555 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 164616 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 164677 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 164738 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 164799 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 164860 29 93.1 0 A...........T................ | A [164886] ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //