Array 1 17551-14612 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEME01000063.1 Siminovitchia fortis strain DE0093 NODE_63_length_17665_cov_36.038037, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 17550 36 100.0 30 .................................... CTGCCGACAATGCTACGGATACCTGCGATA 17484 36 100.0 30 .................................... CGGCTTCATGCCCGTTTGCTCGTAATAGGA 17418 36 100.0 30 .................................... GGAGGCCCTTTACAATGAAAAAACTACTCT 17352 36 100.0 30 .................................... TAGGGAACTTGAGCAATACGAGGCGGAACT 17286 36 100.0 30 .................................... ACGATTTCTTTATCGGATTCCCACGGCGGA 17220 36 100.0 30 .................................... CATTAATCTTTGCTTTTCTTCCGGTGTTTT 17154 36 100.0 30 .................................... AATGCTAGTTATGTAACAACAGGTTTGTTA 17088 36 100.0 30 .................................... TTAGGCGGGAAGTTAGCGAGGTCATTAGAG 17022 36 100.0 30 .................................... GATAGCCTTTCTCATATTCGTGTTTTTCTG 16956 36 100.0 30 .................................... CGGTTTTCAAACGGTACACCGGTGTACCAA 16890 36 100.0 30 .................................... CCTCTTGCGAATGTTCATCGGTCCAGTCCT 16824 36 100.0 30 .................................... GCAATTATGCTTAACACGGTTAAATTGCGC 16758 36 100.0 30 .................................... AAAAAATCCTTCGCAAGATGCTAGAGCTTT 16692 36 100.0 30 .................................... GGAAAGAGGATCAGAAGGACAAAAACTGTC 16626 36 100.0 30 .................................... TACTTTAATCGACCAAATCGCGCAGGTAAT 16560 36 100.0 30 .................................... CTTTCGTGGGGTTACAATCTCGCAGAATTA 16494 36 100.0 30 .................................... CGAAGCTAAGACGGTTAGGTGCGCTCATGT 16428 36 100.0 30 .................................... TGGCACGATGTCACATATCACACGATAGAA 16362 36 100.0 30 .................................... ATCATGTTGTATCGTTCTCCATCCGAAACC 16296 36 100.0 30 .................................... GTATAACTCGTTAACTCTTTCGTTGCAATA 16230 36 100.0 30 .................................... AATCAGTCGGAACAAACATCGTAAAAGATG 16164 36 100.0 30 .................................... CTCCTTTAGTTCCTGGAGCATAAAGGTAGG 16098 36 100.0 30 .................................... GCGCGCTTTAAAGAATACCGCCCCGACTAA 16032 36 100.0 30 .................................... CCTCCTTCGGGAAATAGTCCCTTCACCCCT 15966 36 100.0 30 .................................... TAATACGAAGGTGGAAGCGAAAGGATTAGG 15900 36 100.0 30 .................................... ATGCTGGATGAATTCGTGATCACGAAAAAC 15834 36 100.0 30 .................................... AATGTAAAAGGCATCTATTTAACGACTGGG 15768 36 100.0 30 .................................... CCGCTTTTGACACGTGTCGTCCAACCATAA 15702 36 100.0 30 .................................... GGATATTCGATGAAATCCATGAGTACAAGG 15636 36 100.0 30 .................................... TGCGGATTGGCTGAATGGTCTATCATGGAT 15570 36 100.0 30 .................................... AGGCGGATTGGAATATTCCTATTATCGAGT 15504 36 100.0 30 .................................... AATTGCAGGTGGGAAAGCTGGATTGACAGC 15438 36 100.0 30 .................................... ACAAGGGACAGGGAATGGTTTTATGAGGTG 15372 36 100.0 30 .................................... CCAATCCCACAAGGTGCGCCTGCCCTCGTT 15306 36 100.0 30 .................................... TGCAAGATAATCCATATCATAATTTTTTGC 15240 36 100.0 30 .................................... GAAAAAGAAAGTGGATCCACGTGAAGCTGG 15174 36 100.0 30 .................................... GGAACTTTCGGATTGAAGGTAAACCAGCGG 15108 36 100.0 30 .................................... GAAAATAGAATATGGGTATAAACTTTTTAC 15042 36 100.0 30 .................................... CATTCATATCAATAATGATCTCAATGAAAC 14976 36 100.0 30 .................................... AAGAAGAGAAAGAGATTGTCCTACCCAGTG 14910 36 100.0 30 .................................... TTGAGAGCATCCAGGGAGATGATCTTGAAA 14844 36 100.0 30 .................................... TCCAGCAGTGGTATTAAAACAGCGTGGACA 14778 36 100.0 30 .................................... AGAGGATCCGAAGTTCCTATTAGGAAACTG 14712 36 100.0 29 .................................... TTGGTTGCAACGATGTAAACAAAAAGAGG 14647 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 45 36 100.0 30 GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Left flank : AACCGGCACACTATTTCAGGTTTTTCACCGGAGTTAATTTGAAATTAGGTGTCTGAAATAATGTGCTAGTTTACAGTGATATGATTAATGCATCCACAATTGCGCTTGGTGATT # Right flank : ACATGGCCGCAAAACCCTTGATTCCTCCCCGTTTCAGGGGTTTTGTATTTCCAAAAAAGAAGGATTTATCCCTGGGATTTATCCGCTTTGTTTTATTTTTTATAGAAATAACTGTAAAAAAAATACCTGCAAAATAAATTGCAAGTACTCTTTAAAAGAAATCTACTTTTTTAACACCGAGTTCTTCTTCTGCTGTCGTTGTACCCAATAAAATCTCCATATTGGCAAATTGTTTCTCCGTTATTTTCATTGCTCGGATGGCCCCATTAACAGGGGGGAGATTCTCCTGCAATCTCTTCATATGTTTACGGACCGCATCCTCCCCATTGCAAATTCTTGTGTATACTGAATATTGAAGCATTGTATATCCGTCATTCAATAAAAACTTACGGAAACGAGAGTAGGCTTTTCTTTCCTTCGGAAGTACTACCGGCAAATCAAAGAAAACGATAATCCTCATGTATCTACTCATATGTATGTACGTTTAAATTGGTTAATTC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 6168-8668 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEME01000076.1 Siminovitchia fortis strain DE0093 NODE_76_length_8755_cov_38.959438, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 6168 32 100.0 33 ................................ TTTTAATATTTCAACCTTAGTTTCAGTATCCCC 6233 32 100.0 35 ................................ ATTTCATAGAAACTCATACCCGTTGAAGTTATACC 6300 32 100.0 35 ................................ ATGTTAGCGACTTCAGACAACCTACAACCGGTTGA 6367 32 100.0 35 ................................ ACCATCTTGATCACCTCCTCCTGTGTGCAGGAATC 6434 32 100.0 35 ................................ TTGTCTACACCGAGTTTGCCTAGCACCCAGTTAAC 6501 32 100.0 35 ................................ TCAAACTCCTGCTCCATGCCTTCCAGGTCCTTGAT 6568 32 100.0 36 ................................ ACCTTTGAACTCGTTACCTTTTCTTGAACCCTGACC 6636 32 100.0 39 ................................ TTTCTCAAGGACGATCCAATAGGCGCATCCATAATGCCA 6707 32 100.0 36 ................................ ATTAGCAATATATTTTGGCATGATTTTGCCCTCCTT 6775 32 100.0 35 ................................ TACTACTGTCATAACCGCGCCGAACCCCGAAATAA 6842 32 100.0 36 ................................ CTCGTCAGTAAAACGTATTGCGAATACAACTTTATC 6910 32 100.0 34 ................................ ACAAAAATTCACGCAGATCTTATGGAGTACAGCC 6976 32 100.0 34 ................................ AAAATATTGACGAGATGCTTACTTCGAACGGACT 7042 32 100.0 35 ................................ ACCGACACGCTCGCGAAAATTTGGCAGACGGTACG 7109 32 100.0 34 ................................ CTCGCCGAGTGGTCGGTGCCGAAAGTAACCTATC 7175 32 100.0 34 ................................ TTCTAATTCGATAGTAGAGCCGATGGGGTTACGA 7241 32 100.0 35 ................................ AACTCGGCAATCGGGAAGGCAATAAGCCTCCGCAG 7308 32 100.0 34 ................................ TTCGTAATCCCCGTCGTGGAATTTATCGATTGCT 7374 32 100.0 33 ................................ CGTTACATATCGGCGCGAGCTTTCATTCCAAGC 7439 32 100.0 35 ................................ TATCCTTGAAATCTACGAGCCCTACAGAAATATGT 7506 32 100.0 34 ................................ CAAGAAGACGGTGATCCTGTACTTAAGTTTTTAC 7572 32 100.0 34 ................................ ATACTTGAGTTTTCATTGATGGACTTAAGGTAGT 7638 32 100.0 36 ................................ TATACGAGATTGGGCGTGATTTTCGAGAGTGGTTAG 7706 32 100.0 35 ................................ AAGGATGAAATCTACAACTAGAAAGGGGTAAAAGC 7773 32 100.0 36 ................................ CTGGTGTAGTGTAATTTCGAAAAACAGCCCTACCAT 7841 32 100.0 35 ................................ TTTGATTTTCTTGTTGTCATCTTGCAGTTGCTGAA 7908 32 100.0 34 ................................ TCTGACGTAGAGCCCCACCGTCATAAGCCAAACC 7974 32 100.0 36 ................................ CAAACGTTACTATTTCGTCGCCCCACAACACGTCCT 8042 32 100.0 34 ................................ CTTCCGGCTCATATTCGTAAACCGCTCCGATAAG 8108 32 100.0 33 ................................ GCTAATCCTTCGCCAGTCCAGCGTCCGATTTGA 8173 32 100.0 34 ................................ GTTAGAACACTCAATCTATTCAGCCCTTTTAATT 8239 32 100.0 34 ................................ AACCATCATTATTTGGTTAAAGAACTCACTCCCG 8305 32 100.0 34 ................................ TTCGGAAAACTGGAACAACGCCAGTCCGTCGGTT 8371 32 100.0 35 ................................ AATTTCGATGCGTCGAGGCTTTCAAACGGAATCAT 8438 32 100.0 35 ................................ CTTTTCGACATCTACCAAAGAGTCCTCAACTTCGA 8505 32 100.0 34 ................................ ATAGCGCCGTGTATTGCGTGTGACTTCGCGCTTG 8571 32 100.0 34 ................................ ACGTACCGATAATTTAAGTCCTCTGTTAGCTTTT 8637 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 38 32 100.0 35 GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Left flank : TGAATATCCACCATTTTTTTGGAAGTAGGTGAAAGAGTGCTTGTGTTAATAACATATGACGTCAGTACCACTACTCCGGAAGGTAGAAAAAGACTTAGGAAAGTCTCCAAGAAGTGTTTAGATTATGGACAAAGGGTTCAGAATTCCGTATTTGAATGTGTTTTGGATTCTACGCAACTTAAACAATTGAAATATCAATTAGAGGAAATTATTGATAAAGAAACCGATAGCTTAAGATTTTATAACTTGGGGAAAAACTATAAAGGCAAGGTAGATCATATAGGAGCGAAGGAATCTTACGATATAGAAGGAACACTTATTATTTAATTATGGTGCGAATATACAGCTCTCATACTTTTTCGTGGGGATTCGCACCCGAAATATCTTGGATTTGATAACGAATTTCCAGATAACTTCAAATGTATTCCTTTTTATGGGAATAAATAGCGAGTTTATGTGATTATTACCCTTTTTTTGGATAAAAACTCACTGATTTCGCT # Right flank : TCGACAGTCGTGTAAAGAATCACTTTGTTCCGTCAAAAACAGGCCTTCTTTATTCAAATTCCTTCAGCGTGATTTCTGTACTTCCCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 89857-88488 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEME01000011.1 Siminovitchia fortis strain DE0093 NODE_11_length_89964_cov_39.580017, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 89856 32 100.0 34 ................................ CGACAGCTTCCGTAACGATTACCGTGTTTTTGAG 89790 32 100.0 33 ................................ TCGACTTGGAGGCGGCGGCTGGCTTCGAATCAA 89725 32 100.0 34 ................................ ACCTGTGACGGTGTTACGCAAGACTTCGATTTGC 89659 32 100.0 36 ................................ TTCCTTCGTTTCTTCCGTTTTTAACGACTCGTCAGT 89591 32 100.0 33 ................................ TACTCGAGCTACTAACGCATTCCACTGTGCTTC 89526 32 100.0 35 ................................ TGCTTGCCGTAGCCTATTCCGTATTTCGACTGCGT 89459 32 100.0 35 ................................ GTCTCGCAAAAGATATATCCGGAAACAAATATGGC 89392 32 100.0 36 ................................ GCTCTACCTATCGACGACCCGAAGAACGCGCATTGT 89324 32 100.0 35 ................................ CGTCTCATACACATAGTGTCAGCATCCCGTCGCAC 89257 32 100.0 35 ................................ TCCGGAAATGCTAACGTATATTCGGACGAGCACCT 89190 32 100.0 34 ................................ CCTCCAGTTCAATGTATTTGATTATGGTCATGCT 89124 32 100.0 34 ................................ AGAAAAATCCCGTTGACCGTATCTTTCGATTGCG 89058 32 100.0 35 ................................ CAGTTCTTCGGCTCCCACTTCATCGAGAATAACCC 88991 32 100.0 35 ................................ ATGATAATTACATCTTGGCTGGCGGCTCAATAGCA 88924 32 100.0 35 ................................ CCAATGGCGGCGGATGAGGTGATCATGGGAATCGG 88857 32 100.0 36 ................................ TTCAATCGACAGGTGCATGTCTTTCCACAGTTTCAT 88789 32 100.0 35 ................................ ACGGAAATCCTGCTTTGCTTTTTCACTCAAATCCC 88722 32 100.0 38 ................................ CAGAATATGAAAAGGCTACTAGAAAAATTTGGGTAATC 88652 32 93.8 35 ..........A......A.............. ATCTGAACGTAGTGGGATATAAAGGCGTGTTTGAC 88585 32 87.5 34 ..........C.A......T.......A.... GGTGTAAAGCCGGAGGTCATCGACGGTGCTTTTT 88519 32 75.0 0 .A....................TA...TTTTA | ========== ====== ====== ====== ================================ ====================================== ================== 21 32 97.9 35 GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Left flank : CAAACCGGCACACTATTTCAGGTTTTTCACCGGAGTTAATTTGAAATTAGGTGTCTGAAATAATGTGCTAGTTTACAACAGTCGGTCCGTACACAAAGTTTCCTAGC # Right flank : ATCAGTTTTTTTCTAAAATGAATCTTTTCCTCCCCTCACCCAGTATATATGTTTAGAATAATTTTTAAGGGGTGGCTGTAATGGGTATTTTATCAAGGTTTAAAGATATTATGTCGAGCAATATCAATGCATTATTGGACAAGGCGGAGAATCCGGAGAAAATGATCGATCAGTATATGAGAAACCTGAACAGTGATTTGGGCAAGGTGAAAGCTGAAACTGCTTCGGTTATGGCGGAGGAACAGCGGTCAAAACGGGCGCTCAATGAATGTTCGACAGAGATTGAAAAGATGCAGAATTACGCGGTCAAAGCCTTGGAAGCAGGAAATGATGATGATGCACGGAAGTTTTTAGAGAAGAAGGCCTCCCTGGCCGAAAAAGAAGCGGAATTGCAGCAGGCCTATAGTTTGGCAGCTTCCAATGCGGTCCGGATGAGGGAGATGCATGACAAGCTTGTTTCTGATATCGGCGAGCTGGAGGCACGCAGAACGATGATCAAA # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 73-768 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEME01000007.1 Siminovitchia fortis strain DE0093 NODE_7_length_110919_cov_36.475722, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 73 36 86.1 30 CCAGG............................... ATGCTAGTTTTTCGTTCATCTCTTATCATC 139 36 100.0 30 .................................... TATACTCATTTACAAATTCAATACCCATAC 205 36 100.0 30 .................................... GTCAGTTCGTTTGTATTCGTAATATTAATC 271 36 100.0 30 .................................... CTAAGACGAGCGCTAACGTTAAATCTCCGA 337 36 100.0 30 .................................... ACGTAATTATCAATTTCCCGGAACGTCTGG 403 36 100.0 30 .................................... TAGAGCTTGGGTTTTACCGCATGATGAAGT 469 36 100.0 30 .................................... GGCATGAAGATATTCTCGTATTCTACAAAA 535 36 100.0 30 .................................... TTGGTTGTTTGATTTTAATTCGTTAATAAT 601 36 100.0 30 .................................... CTTTCCCCGTCCATGTTTTCTTCGGTTTTC 667 36 100.0 30 .................................... GACTGAATCACATCCCCCAGAGGCATTCCA 733 36 86.1 0 ..T..........C..G......A......A..... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 97.5 30 ATCATATCACATCAAGATTTACAGGGGAATTATGGC # Left flank : GTTTCCTAAACCTAATTATACCAAAGGCTGGAGCCCTTTTTGTATTTAATAACTAGATTTTACTTTCGTAATC # Right flank : CGATAACTGTCAATTGGAGTTTCATCTCTTTTTTCTTGGAGGTAAGCTTGCCCCTTCAGTAACTGCTAAAACTGTCAAAAAAACCGTTCCGCCAGCGCACATTTTAATGATAAAATGGAACTAAATACTGGACCATGAGAAAGGGATAATATGGAAAAAGGATTAAAGTACAGCTCTACCATCAAGTCACGACCCTTCTTATACAAGGAGACCAAAATGCTGGCAGAACTGCATTTGAAGGGGTTGAATGAACTCGAATTGAAAGAGAAAGTTATCAGCCAAAATATCTTTCAAGTCAAAACTGAAACCCGCAAAAGAGAAATTGCTTCAGCCATAAAGGCACGTTTAAAAGTGCTGGATGATTACCTCATTAGGAAGCTTTTAACTACTGACATACATACAAGTAAATTGATCGTACTGTACGCTATCCTTAAAACGGACAGGCTGTTTTATGAATTTATGTATGAGGTTTTCAGTGAGAAAATTTCCGGGCGCGATTT # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCATATCACATCAAGATTTACAGGGGAATTATGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [5-5] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 118-945 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEME01000124.1 Siminovitchia fortis strain DE0093 NODE_124_length_1018_cov_36.946865, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 118 36 100.0 30 .................................... AGCACGTTACAACAGACTTCAAAAAGTTTT 184 36 100.0 30 .................................... CTGCTATTTCATCATCGGTAACGCGCTTTT 250 36 100.0 30 .................................... AGTCATTAGTACGCAAATATACGGTAAAAG 316 36 100.0 30 .................................... CGGATTCGCTTCTCCTACGATGTTCTTAGA 382 36 100.0 30 .................................... CTTTCACCTTCCAAACCTACATTAGTAGAC 448 36 100.0 30 .................................... CAGCGGTTAAACTGCCCCTTTATAAATGCT 514 36 100.0 30 .................................... TGCAGGTTTTTAGCGGCCTTTTCACTGGCG 580 36 100.0 30 .................................... CATCTTGCCCCAGAACATCAGTTGCACATA 646 36 100.0 30 .................................... GCGACTTGAATCCGGTCGTTACGGTAGACC 712 36 100.0 30 .................................... GTGATTACCTCGTTGGATAAGCGCATTATA 778 36 100.0 30 .................................... TGATACTGTGTTAGGTGAGGTGGCTGTCGT 844 36 100.0 30 .................................... ACTGACTTTGTTGGGGTAGTTAATAAGACT 910 36 94.4 0 .................................TG. | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 99.6 30 GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Left flank : AGGGAAGTACAGAAATCACGCTGAAGGAATTTGAATAAAGAAGGCCCTTTTTTGACGGAACAAAGTGATTCTTTACAGTGATATGATAACGAAGGTAACATTTCAACAGTGACGCAAG # Right flank : AAAGAATCACTTTGTTCCGTCAAAAATAGGCCTTCTTTATTCAAATTCCTCCGGCGTGATTTCTGTACTTCCC # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 118-616 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEME01000140.1 Siminovitchia fortis strain DE0093 NODE_140_length_689_cov_34.217320, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 118 36 100.0 30 .................................... GAAAAGTTATATGAGGAATTTAAAAAAGAG 184 36 100.0 30 .................................... CATGCTTTGCGGGATTGATGCGGCAACGCT 250 36 100.0 30 .................................... TCTGCAAAGTCTTGGACAGCCGCCTGCAGC 316 36 100.0 31 .................................... CCAACGCGGACAAGCGCCTTTTTAAGTTCAG 383 36 100.0 30 .................................... GGGCACTCCTGCTATCTCCTACTCTCATTA 449 36 100.0 30 .................................... TCGGGGATCCGGATGCTCTTTTAAAATATG 515 36 100.0 30 .................................... GTTTAAAGGGAAGATAGTTACATCTGTCCC 581 36 94.4 0 .................................TG. | ========== ====== ====== ====== ==================================== =============================== ================== 8 36 99.3 30 GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Left flank : TTTAGTACCCAGATTTGTAAATTGTTCCCAAAAGAGCGCTGAATTAGTTTTCGGCAAATTTACTTTCGTAATTTGGGGTGATATGATAATGCTCACGAGTAGAACCTTTTTCTCCACG # Right flank : AAACTAGCACATTATTTCAGACACCTAATTTCAAATTAACTCCGGTGAAAAACCTGAAATAGTGTGCCGGTTT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //