Array 1 631555-630305 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045761.1 Salmonella enterica subsp. houtenae str. CFSAN000552 strain SGSC 3086 isolate SARC10 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 631554 29 96.6 32 ............................C CAGCATCGCCAGGATACGCGCGCCGTGGATAT 631493 29 100.0 32 ............................. GATGGTGAGTGGCCCATCGATAACGGTGTCAT 631432 29 100.0 32 ............................. GACACGCTCAACCGCAGCGCAGGCGAAAGCAA 631371 29 100.0 32 ............................. GAGATTAACGCGGCTAATGACCGCCAGAAAAA 631310 29 100.0 32 ............................. TAAAGTGGGGCATCTGGAACGTCGCGCCCCAT 631249 29 100.0 32 ............................. CTGGCGGTGAATAAACAGCGCGAGTGGCCTGA 631188 29 100.0 32 ............................. GCCGTGGCTCTTGGTGCGACGCTTTCAGAAAA 631127 29 100.0 32 ............................. CGCTATGGCGATATTGCCGATGCCATGCTGAC 631066 29 100.0 32 ............................. CCCAGCTCCAAAAATATTGGGCGGGTGATGAT 631005 29 100.0 32 ............................. TGCTTATATTGGAAACTAAATGTTATCCAGTG 630944 29 100.0 32 ............................. GAGTGCGGAGATGGTTGACCTTGGGGATACGG 630883 29 100.0 32 ............................. AACATGAGTTGCTGGCGTTGTTAAAATTTTGT 630822 29 100.0 32 ............................. TGCGCCGCCAGATGCCATTTGCAACCGCATCG 630761 29 100.0 32 ............................. GTCACACGTCGCCAGACGCTTGCGCGATTTCT 630700 29 96.6 32 ............................A GAATTGAACAGAGCGATAACCGCCGCCAGCGC 630639 29 100.0 32 ............................. CAATACGGCTGGACGGGGTTTGATTCGTTAAC 630578 29 100.0 32 ............................. GTATTTAACCCAGGATTCACACTCGGCCATTC 630517 29 100.0 32 ............................. TTGGATCTCGCTAATGATCATGGCGCGGAGAT 630456 29 100.0 33 ............................. GCTCGATGAGGCGTTTACCTGCTGGTATCAGGC 630394 29 100.0 32 ............................. TTTCTGCTGTGTGTACCCGAGCTCTTTCCTCC 630333 29 93.1 0 ...........................GT | ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AATAATGTCCAGCGCTTCGCGGCGTTGCTGTATCCAGTTTACGCTCACGGTACGTTGCATTTCCGGGCGCGCGGCAAGCGGTTGCTCCAACAGACCGGAGGAAGAGAGATGGCTTAACCACGGGTAACCCGCGTTATCGTTGGGGTCTGCGGCGGCGAATCCTGCGCCATTATTGAAGGCGTCGAGTAATTTTTCCCGCAGGGCTGCGGGCAGCGTGGCGCTTAAAATAATCGCGCTACCGCCCTGGGCGGCATGGAAACGCAGTAGACCTTCCAGCAATTTCACCATATAACCATCGTAAGCGTGGACTTCATCCAGCAGCAGGATCTTGTCCCTCATTCCCAACAGGCGGAGCGACTGGTGGCGAAAAGGCATCACCGCCATTAAGAGCTGATCCAGCGTACCTACGCCAACCTCCGCCAGCAGCGCTTTTTTGCGCGAATCGGCAAACCAGGCGTGACACTCGCTGGCCGCGTTGCCGTCATGATGCGCGTAATCTT # Right flank : TTTTCACCAGCAGGTCAGGACGTTTTTTCTGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCCAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCATGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGACATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATATCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAAGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //