Array 1 309084-307651 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIY01000003.1 Kitasatospora sp. MBT66 scaffold3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 309083 29 100.0 32 ............................. GGAGGGGGTGGCGGGCGCCGGACCGGTGGGGG 309022 29 100.0 32 ............................. TTTAGTCAGTAGGCTTGATCAGTAACACATGG 308961 29 100.0 32 ............................. CCCGCTCGGCACCTCCGGCGGTCTGACAGATG 308900 29 100.0 32 ............................. TCCCGCTCCTGCGCCGGGGTGACGCGCAGGGT 308839 29 100.0 32 ............................. CCGGCGTTCTTCCGGGTTGCGGCCCGGCGGCT 308778 29 100.0 32 ............................. CTCATCGGCCGCATCACCGCGTGGGCGATGAG 308717 29 100.0 32 ............................. CGACTCCCGCCTCCACAGCTTGAGTCGTAGCT 308656 29 100.0 32 ............................. TGTCCGGTCCTCCGCCCGGTGCGGACGCCCCC 308595 29 100.0 32 ............................. CGGCGAGCGCGACGGCGTCCCGAACGTGGCCG 308534 29 100.0 32 ............................. AAGAGTTAGGCGAAAAGTCAACAAAGTGATGT 308473 29 100.0 32 ............................. CAGAATGCCGACGTGGCCCGGCTCCTGCAGGG 308412 29 100.0 32 ............................. CAACTCTTCCCGGCCGCGAGCGCCGGTATCAG 308351 29 100.0 33 ............................. CCGCGCAGCTCCGCCGACGCCATCGCCTGGGAG 308289 29 100.0 32 ............................. TTGGATCAGGATGGGGTAGTCCGTGGCCAGCT 308228 29 100.0 32 ............................. TTGATGTCCACCGCGGTGCCCCCGGTGTCGGA 308167 29 100.0 32 ............................. TGTCAGCCTCGGGGCAGTCGGTGAGGCCATGC 308106 29 100.0 32 ............................. CTGCAGACCGGCGTGCAGAAGTGACCACGACT 308045 29 100.0 32 ............................. CATGCTGCGCCCCGAGGTCAGTCTCCCCACCG 307984 29 100.0 32 ............................. GCAGAGAAGGCCCCCGCCCTCCCGGAGGAGGG 307923 29 96.6 32 ...........A................. GAAGTAGCCGCGTCCCTGGCGGGCGAGCACGA 307862 29 93.1 32 ....C.......................T CGCCAGCGCGGCGACCTTGAGGCGGGCCTTCG 307801 29 100.0 32 ............................. AAGCTGCTCGGCCGACCCGGCCAGTACACGTC 307740 29 96.6 32 ........................C.... GTGGCGGTGGCGATGCTGGCTCCGGTGCTGCT 307679 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.3 32 CTGCTCCCCGCGCCTGCGGGGTTGGTCCC # Left flank : CGCCTCACGGACACGTCGAGCCCTCACGCCCTCGGCCGCACCTACGCCCGACTCACCCTCGGCCAAGCTCTCGACCCCGCCGACCGCCAGCGGCTGACCGGCTGGCTCCTGACCAACACCACCGGCACCAACCGCCTCCGCGCCGGCCTACCGCCCACCTGGCGCGTCGCCGAGAAGACCGGCACCGGCAGCTACGGCACGACCAACGACGTCGGAGTCACCTGGCCACCGGACGGGCGTCCGATCGTGGTGGCAGTACTCTCCACCAAGCACACCGCCGACGCCCCGGCCAACGAACCACTGATCGCCGAGACCGCCCGGATCGTCGCCACTGCTCTGGCCCAGCATCCGACAACCGCCAAAGGAGACTCGCCATGGGACCTTCAGCGACCGGAAGCCTGACAGCGACCCACACCCTCGCCGGATTGCGAAGAATGCCCAATTCGAAGGAAGTTGCCAAAACCGCCACTCGCGCGTGACAACATCCCAGCTCACGAACT # Right flank : TCGCCGACCCGGCCGCCATCGACTCCACCCGCCTATTTTGGCGGGGGTCGGTCGGCGACCCGTTGAGCATCATGCTGCACTCGGCCTCAGGGCCCGGGGCTCGGCCGTGCCACCCCCGGCAGTCACCGCGACTGACTTGTCGAGCGATCCAGGACTCCGCGCTGGACCAGATGCCCCAGCGAAGAATCCGGCCGTCCTCCCGGGCCAGGCCGTCGGTCTCCGCGTGGCCTGGGACTCCTCGGTCTGCGTGAATCCTTGCTCCGCCCCCATCTCGAACGCGGCCCGGACGACAGGCCACGGCTCCGAGTACTGCTTCTGAACCCCGAGGCGCCGGGCCTACCCCGGCTCGCGGGCGAGATCGGCGAGTCCGCCGAGTCGCTATCCAGTGGAATCCGGCTCGCCGAGGCTCGGCTGCGTGGGCTGGCCGAAGTCGGCCATGTCGAGGTCTACCGGCACCGAACCCTGCCGGTCTGGCGAACGATCCGACTCGATACCGCCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCTGCGGGGTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCTGCGGGGTTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 526876-526174 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIY01000010.1 Kitasatospora sp. MBT66 scaffold10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 526875 29 100.0 32 ............................. ACGCTGTACGCGCGGGATATCTCGGATATCCA 526814 29 100.0 32 ............................. CTCGAAGGGCACTCGGACCCGGCGTTCACCAG 526753 29 100.0 32 ............................. TCAAGCTCATCCCCAAGCCGGAGAGGGCAAAG 526692 29 100.0 32 ............................. AGGCAGGAAGCTCATCGGGTCACCGCCGAACC 526631 29 100.0 32 ............................. GCCCTTGAGGGCATGTTGGACGAGCTCACGGA 526570 29 100.0 33 ............................. CAGGCCAGCGGACAGTTCAGCGCGACCCTGCTC 526508 29 100.0 32 ............................. TTGGGCGCACGCCAGTGGGGAACCGGTCATGC 526447 29 100.0 32 ............................. AAATTTTCGATTAAAGGGCTGAGCTGGGCAAA 526386 29 100.0 33 ............................. GTTCTTTTGCCATTGCCCGATGGGGTAGTGGAC 526324 29 100.0 32 ............................. ATCGGGCTCGCCACCACGACCGAGGGGGCGCT 526263 29 100.0 32 ............................. TTCACCTAGCACCCCGGAGCGGTCCCCTTGAT 526202 29 89.7 0 .......T.............T...C... | ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.1 32 CTGCTCCCCGCACACGCGGGGATGGTCCC # Left flank : CCTCGCCACCACCGACCTCGGCCTGTCCGGCGCGGCGGGCTTCTACGGCGTGCCGCGCTTCTTCGGCGACCGGACGGAGCAGCTGACGGCGCCGCTGCTGATGCTGCTGGCGGGGGAGGACGTGGTGACGACGCGGGAGGAGTTCGCGGAGTTCACCGGCGGTCTTGAGCGGGCGGGCAAGGAGTACGAGATGAAGGTGTACGAGGGTGCCCCGCACTCGTTCTTCGACGACAGCGAGGAGGACTGGAGCGAGGCCTGCACCGACGCCTGGCACCGTCTGCTGGCTTTCACGGGCGTGCGGGTCGGCGAACCGGCGGCGTGAGGGGAGCTGGTTGGTGAGGCCCGGCCCGCCGAGGCGAACCCGGCGGGCCGGGCGGGGGAGTTCGGGGGCGTAGGCTTCCGGGGTAGTGATGGCGATGAAGGGAATGCGCCAGATGTCCGAATTCCAAGAAGTTGCGAAATCCGGCTCGCTCGCCGTCTGAACGCGCAGGTCACGAACT # Right flank : GCCCCAACGGTCTTGCGGTGGGGCGGGGACGGATTGTGGCTTTGGGTGCCTGTGTGGGAAGTCGGATACGCCGACTTCCCACACAGGACGGCGGGGTGAAGGGCTCGCGTTCCCGTGGGTCGGATTCCGGGATTTGGTTCGGGTTGCCCGGCGTAGGAGACGCGCGGGCACCAATCGCCCGCTGTGGACCTGGACCGGCGCTGCAATAGAGGCGTTGGACAACTTCCAGGTCGGCTGCGGCGCCGACGGGATTCGAACCCGCGGACAGATAGGGACAGGGCCGTCCGTCTCCGTCAGTCGACGTGAGCGGGACCTCGCCCACGTCGATCGCAATGGGCCGCTCTGCCACGGCACCGCAGCCTGCGGGAATGCGCGCTTTCCCGTTCCGGGACACGGTAGCGGGACGGCGTTGGCGTAGCGATGCCTTATCCAGCGCGACACCCGTTGCCACAGAACCACAGGAGTTGAGCCGAGACCCGGTCGGGCGGCAGTTGTCCACT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1230518-1230851 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIY01000010.1 Kitasatospora sp. MBT66 scaffold10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1230518 29 100.0 32 ............................. CGCCCCCGAATGTCACGGCAAGCCGTGCAAAG 1230579 29 100.0 32 ............................. TCGATACCGAGCGCGGCGACCAAGGCGGTGGT 1230640 29 100.0 32 ............................. AGGATCGACTGGTTGGCCATGGTGACGGCGCC 1230701 29 100.0 32 ............................. ACCGTCTGGTTGTTGGTGTTTGGCAAGGCGCC 1230762 29 100.0 32 ............................. AGCAACTAATGGTCCCGCTCGGCGAGTGGGTC 1230823 29 93.1 0 ..............C...........T.. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.9 32 CTGCTCCCCGCGCATGCGGGGTTGGTCCC # Left flank : GCCACAACGACCTCCACGAGGGCAACGTGCTCGTCAGCCCCGGTCACGCGACCCGCGTGACCGGCATCATCGACGTCGAGAACGCGATCGCCGCAGACCCCCTGATCGACCTCGCCAAGACCGACTACTACGCCCTCGGCCGCGGCGAACCCGAACGCCAAGCCCTGCTGGAGGGCTACGGTCCGCTCCCTCCCGATGCGGCAGAACGCCTCGACCTCTACCGGCTCTACCACGCCCTCGAGTTGTGGGACTGGTTCCGCTCGATCGACACCGTGGGCCCACTGGCCAGCATCGCCGAGGACATCGCCCGGCTTGCGGGCCGACGCTCCGACACACCGTCGTGACTCGTGCAACTCGCACAGCGAGCGGATACGGAGCCGGTCAGGATGGATAGGCTGACGCTGGTGCGCAGCCCGGCGATGAAGGTAACCGAAATGCCCGAATCTCTGGAAGTTGCAAGATCCCGCCCCACCGCCGGATAGAACCACAGCTCACCAACT # Right flank : CGGCATCGAGAGCCACGCCGTCGCAATCAACGTCTGCCCCCGCACCGGCTGACGAAGTTCCCATATGCCGGATGCACGCGGGCCGTGAGCGAGCTGGCGGCCCCTGTTCTCCGAGTGACCTCCGAGGTCGGGTCGGCGGCCGAGGTGCCAGTCCTCGTCGAGGCCCGCCCATGGCCCGGCCGCCCTTCGGGCCCGACGAACCGTGAGCAGCAAAGGGCCCCGGTCCATCCGCTTCCCGGGTGGGGAATGCGGACGGGGTCCGGCGCCTGTGTGGCGCCGGACCCCGTCCGACTGTGGAGCGCCAGGCCCGGGTTGCACGGACTCTTCCTACTGAAAGTAGGACGTGCTCTGGTAGCACCGCTGACGCCTGGCGAGGAATCATCTCCCTCGCGACATCAGGAAGATTAGCAGCTCAGCGCCCATGTTCCGAATCGCGGTCGAGTCATGGCCGAGGTGGAGACGCAGGCCTTCCGGGGACCTCCCTTCGAAGCCTGCACGGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCATGCGGGGTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGTTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1234661-1236154 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIY01000010.1 Kitasatospora sp. MBT66 scaffold10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1234661 29 100.0 32 ............................. GCGCCGCGCCCTACCTGACGCCCGCCCTGGTG 1234722 29 100.0 32 ............................. GCGGGCGGCGCCATCCTCGCCGTCCTGCTGAT 1234783 29 100.0 32 ............................. GTGGCCGCGCTGTAGCCGGCCTGGCGGACGGC 1234844 29 100.0 32 ............................. CCGTCCGTGTCGCGGTAGGAATTGATCCGCCA 1234905 29 100.0 32 ............................. TCGACACCACCCCGAAGGCCGGCGGCGGCCTC 1234966 29 100.0 32 ............................. GTGCCGCTGTAGAGCGCGGCGACGTTGTCCCG 1235027 29 100.0 32 ............................. CCGGTGGCTCAGCACCCCGACGCTCCAGCGGA 1235088 29 100.0 32 ............................. GGTCGGCTCGCCAACCAGCGTGGTGTGGGGCA 1235149 29 100.0 32 ............................. AACTCGCCCGTGGCGTCGCGCACGGCCCGGCC 1235210 29 100.0 32 ............................. CGGCGTGGGTCGCGGCGAAGCACTGCCCGTTG 1235271 29 100.0 32 ............................. CTCGCCGACGATCTTGCCGACGTTGCCGATGA 1235332 29 100.0 32 ............................. CGGTCGGCGGTGGTCACCCGTAGTGGTCCGAC 1235393 29 100.0 32 ............................. GGGTCTTGAGCTGCGGTTTTCTCCGGGCACAA 1235454 29 100.0 32 ............................. TCGACACCGTCACACTCATGGATGGGGCCCTG 1235515 29 100.0 33 ............................. GTCAGGATCTCGTCCGTCACCTCGTCGGCGTCG 1235577 29 100.0 32 ............................. GTAGGACCACCGCTGTCCGGTCTCGGGATCCT 1235638 29 100.0 32 ............................. GGCCCTGTGCCAGGGTCCGGGGTGGCCGGCCG 1235699 29 100.0 32 ............................. CCGGGAGGGGACTACCGGATCGTGGTGGCCGG 1235760 29 100.0 32 ............................. GGTCCAGGGTCCGGCGAGGCCGGTGAGGGTGG 1235821 29 100.0 32 ............................. GGCATGGTGATTGAGACCGTAACCGGTCGGCG 1235882 29 96.6 32 .............G............... GACTTCGACGCCGGCGCGTTGATGGGCGCCTC 1235943 29 96.6 32 .............G............... GACTTCGACGCCGGCGCGTTGATGGGCGCCTC 1236004 29 100.0 32 ............................. CCGGCGCCGACGGGCGCACCATCACCGCCGGC 1236065 29 86.2 32 ...T..............CA.C....... GTGCTGGGCACGAACTCGCGGGTGAGGTAGGG 1236126 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.0 32 CTGCTCCCCGCGCATGCGGGGTTGGTCCC # Left flank : GAACTGGACTGGATCAGAGCCGGCAAGGTGCTTACCAACCTCTACCTGCGCGTGCCCGCACCGTCGCTCGTCACCGGGGCACCCGGCCCGCCGGGCGGCGGGAGCACGACGTGCTCGGCCACCGGGCCGCACACCGTACCGCGTACCCGGCCGTACACCTTCGTCGACGGTCGCCCGGACGGGCCGTCGCCTCGACGCCCACCGGCTCTACCGTGCGCTCAAGTGTGGGACTGGCGCCGCTCGATCGCCACTCTCGGCCCCTGGCGGCTTCGTCGACGACGTTGCCCAGCTGGCGAACCAACGCTCCGCAGCGCCGTCGTGCCCCGGGCCAGGCGCAGCCCACCCAACCGTGCCGGACGGGGAGCGGAGACGGGGTTGGCCGGATGGTGGATAGGGTGACCCTGGTGCGCAGCCCGTCGGCGAAGGTGACCGAAATGCCCGAATCTCTGGAAGTCGCAAAATCCCGCCCCACCGTCGGATAGACCCGCAGGTCATCAACT # Right flank : CGGTGCCGAGAACGCCCGCTGCTGCACCAAGTGGAGTCGTAATTCCCGCATCCCGCCGGCGTCGGGCCGGCCTAGCCGAGGGCGTGCACGATGCCGCCCAGCAGGTGTTCGAGGGCCGCGCGCAGGGGCAGGACGAACGGGCCGGCGGCTACGGCGACGGTGAGGGCGAGGGGCAGGCGCGGGGTCTGGCGGCGGTGCGGGAGGATGCCGAGGAGGAGGACCAGTGCGGCGATCACCAGGGGCGGCCCCAGCGCCACCACCCAGGCCGGCAGCGGGCCGAGGGTCACCGGGGACTTGAGGGCGCCGGACAGGCCGAGCCAGCCGACGGAGAGCAGCAGGCTGAGGTCGATCAGTCGGGGGACGGCCGGGGAGACCCGGACCCGGCCGTCGAGGTTGCGGCGGAACGAGAAGACCATCATCAGCACCATCACGGACAGGACGGCCAGTTCGACGCGCAGGACGCCGGGGAGGTCGGGCGGGGGGAAGTGTCCGGTGCTGAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCATGCGGGGTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGTTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //