Array 1 30048-30197 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNHJ01000017.1 Aerococcus urinaehominis strain DSM 15634, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 30048 28 100.0 33 ............................ CAAAGGGATTAAGCCCTTGTGCTTTGCATAGTT 30109 28 100.0 33 ............................ TGTATAAGTTTCGCCTTTTTTTACATCCGCTAT 30170 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 100.0 34 CTTCTTCCCGCATACGCGGGGGTGATCC # Left flank : CGAAAAGCGAGATCAAATTATCGAAATTGCTGCAGTTAAAATTCATGAGGCTAGTATCGAGCCTTTTCATAGGCTGGTCAATGTTGACAAGCAAATACCAGCTGCTATAACAGATTTAACAGGTATAACTAACCAGATACTGTCTGATGAAGGGGTCAGTATTGCTAGCGCTATTCAAGATTTTAAACTATTCATAGAAAATACAGTTTTAGTCGGCTATAACATCAATTTTGATCTTAAATTTATCAATGCCTATTTAAATGCTAGCCAACAGCCAGTGTTTAATAATAAAACGCAGGATTTAATGAAGATTGTTAAAAAAGATAATATGTTTTTAAATAACTATAAATTACCTACTGTACTTAAGAGTTATGATATCATGGATGAGGTTGTACACCGGGCCCAGGAGGATGTAGTCTTGTATCTCAAACTAATGAGCAAACTAAATAAATTTGATCATTTGAATATTGAGAAGCTTGATTTGGATGGGATCTTTTAGT # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATACGCGGGGGTGATCCCTGAGAAAACGTCACGGCCAACTTAAAGAGTACCTTCTTCCCGCATACGCGGGGGTGATTCTACGAGGGTAGCACGCTCAATATATCTAATATTCTTCTTCCCGCATACGCGGGGGTGATCCTGCCATTCCACACGCCGTCAATGATTTCTCTGACTTCTTCCCGCATACGCGGGGGTGATCCCGATAGACAGACAGCACCCTGACGCCGAAAAAACTTCTTCCCGCATACGCGGGGGTGATCCTGCCATTCCACACGCCGTCAATGATTTCTCTGACTTCTTCCCGCATACGCGGGGGTGATCCTTAGGTCGGTATCTAATACCGGTGCATTCTCAACTTCTTCCCGCATACGCGGGGGTG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTTCCCGCATACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.40,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 30368-31614 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNHJ01000017.1 Aerococcus urinaehominis strain DSM 15634, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 30368 28 96.4 33 ..........................T. TACGAGGGTAGCACGCTCAATATATCTAATATT 30429 28 100.0 33 ............................ TGCCATTCCACACGCCGTCAATGATTTCTCTGA 30490 28 100.0 33 ............................ CGATAGACAGACAGCACCCTGACGCCGAAAAAA 30551 28 100.0 33 ............................ TGCCATTCCACACGCCGTCAATGATTTCTCTGA 30612 28 100.0 33 ............................ TTAGGTCGGTATCTAATACCGGTGCATTCTCAA 30673 28 100.0 33 ............................ TCTCTACATAATTCTTTGACCTCTTCTAAAATA 30734 28 100.0 33 ............................ CGATAACCCTAATCAAATCATGGCATCAATCAG 30795 28 100.0 33 ............................ CGGGGTAGCAATCCAATCAGCAGGCAAGCTAGG 30856 28 100.0 33 ............................ TAATCAAGCCCCAGTCGCAGTGACTGAGGAAGT 30917 28 100.0 33 ............................ CTATAGCCATGACTGAGTACCTGGAACGTATGC 30978 28 100.0 33 ............................ CAGGAGGAAGCTGACAATGAAAATTAAAGTCCG 31039 28 100.0 33 ............................ TCTGCTCTTTGAAAAAACCACTAGTAACCATTT 31100 28 100.0 33 ............................ CTTAACTTCGCTTTGCATACGTACCTCCTAAAA 31161 28 100.0 32 ............................ TTTAGCAGGGTCTTCATTACCCATCATACCAT 31221 28 100.0 33 ............................ TAGCATGTTTGCCTTTAAATTTGCCAAAAGTAA 31282 28 100.0 33 ............................ CAGTGAGTTATCTCGGTAACTATCATCATAGAC 31343 28 100.0 33 ............................ CTTAACGCAAAAAGAAGTAGCCGAGAGAGCAAA 31404 28 100.0 33 ............................ CGATTTTCCAAGTTCTTTGATACCTTCATCATT G [31426] 31466 28 96.4 33 .......................A.... CTAATTACGCATGGACGTAACGGTCGAATCAGG 31527 28 100.0 32 ............................ TGTCGCTAAATTTAATTTTTTTATTAAAAGAA 31587 28 82.1 0 .......T....C......AC.....T. | ========== ====== ====== ====== ============================ ================================= ================== 21 28 98.8 33 CTTCTTCCCGCATACGCGGGGGTGATCC # Left flank : AAGATAATATGTTTTTAAATAACTATAAATTACCTACTGTACTTAAGAGTTATGATATCATGGATGAGGTTGTACACCGGGCCCAGGAGGATGTAGTCTTGTATCTCAAACTAATGAGCAAACTAAATAAATTTGATCATTTGAATATTGAGAAGCTTGATTTGGATGGGATCTTTTAGTCTTCTTCCCGCATACGCGGGGGTGATCCCAAAGGGATTAAGCCCTTGTGCTTTGCATAGTTCTTCTTCCCGCATACGCGGGGGTGATCCTGTATAAGTTTCGCCTTTTTTTACATCCGCTATCTTCTTCCCGCATACGCGGGGGTGATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATACGCGGGGGTGATCCCTGAGAAAACGTCACGGCCAACTTAAAGAGTAC # Right flank : CTTACTAATTAGTACTAATCAAAGAATGGGCAATTGCTTAGAGGTATTTATAAAAGTTGACAAAATTAATCACAGATTGTACTATTTAGGTAGTATACAGCCTATTGGTGTATGTAAAGGAGGTAATGTTATGGCTACAACAAGTTTTACTAAAAATTTTAAAGTGAGCGGACAAAAAAGTGAATCTTTTGTTAAAATAATGACCACCCGTCCTAAAAAATCTATCGATACCCAGTTTAAGTCTAAGCGTACAAGTGTATTAGATAGAAAAGATTTACTAAGGAAAGCATTAACCTAAGTGATTGAATATGAAGTTTATCCCTTATCTGACTTGTTATCCGCTGACAAAGCAGATATAGATGTAGAAAAATTAAAGGTTTCCATGTCCTCTTTTAAGTGTAGGAGAGAAGTAGATATGGAAACCTTTTTGAGTTCGAAAGCAATCACATATGATAATTCGGCAATAGGAAGAACGTTTTTGATTGTAGATAAATATGAAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTTCCCGCATACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //