Array 1 21088-23130 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIOJ01000060.1 Corynebacterium diphtheriae strain ST378-KZN-2015-45786 45786_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 21088 29 96.6 32 ............................G CCGAATTGGGCGAAGCCATGTCGGTAGCACGG 21149 29 100.0 32 ............................. CAAATCTGGGAAGTTCTGGTCAGGGTCGGCGG 21210 29 96.6 32 ............................G TCGATCCTTTACCTGCTGCCACGCCGACGACA 21271 29 96.6 32 ............................G AGATGAAAGACTGGACGAACGCCCAGCTAAAA 21332 29 96.6 32 ............................G TCGCCTGCGGAAACCACACCCTCAAAGCGCTA 21393 29 96.6 32 ............................G CACTACTTTCCCATGGTCGTAAAGGTATGTTG 21454 29 100.0 32 ............................. CATGATCACACTCACAACCACACTCACCCTCA 21515 29 100.0 32 ............................. CTGTCATCGGATTTTTTGAGTTTTACCAACCG 21576 29 100.0 32 ............................. GTCTCGCGCCGCGACGCTAAAGCGGTGGGCCG 21637 29 100.0 32 ............................. CATTCTTAGCGCTTGGCGTCGTGCGAGCTGGT 21698 29 100.0 32 ............................. ACGCGCCCTACGTCGGCTAATTCCTCAGCAGT 21759 29 100.0 32 ............................. GCTTATTAGGGCTTCCCCGTCAACAACGGACA 21820 29 96.6 32 ............................G ATTCGACTTCCACCGATCCGATGTTTGCTCAC 21881 29 96.6 32 ............................T CCTCTGCGATTCGTGTGCGTATGGAAACCCTG 21942 29 100.0 32 ............................. GTTGGCGAGGGCACCAGATACCAATGTCAAGC 22003 29 100.0 32 ............................. TCGTCCACAACGGCTAGGCTCTCGGTCTCGGT 22064 28 93.1 32 .....-......................T CATGTGAAGGTGATGGTCGAATGAGTGCCGGT 22124 29 100.0 32 ............................. CACGGCGTAGTTGGTAGGGGATGGTTCTTCAT 22185 29 100.0 32 ............................. ACGAGCGGTGGTCTAGCGTTCCTCCCCGCAGT 22246 29 100.0 32 ............................. CAGGTAAATAGTCGAGTTATCCGGATTCCTCG 22307 29 96.6 33 ............................A CAAGGCCACTAGACGCGTATTGCCACAGTTCGA 22369 29 96.6 32 ............................G GAGACCTGATGGCTAAAGCTACTGTGACTTTT 22430 29 100.0 32 ............................. ATCTACACCACACGCCGCACACACGAAATGCA 22491 29 96.6 32 ............................G AAGCCGCGACGAAAAAACAATAAATAGAGCAC 22552 29 96.6 32 ............................G TTTTACGGATGATTCCGAGCGTCCCAGTCGTG 22613 29 100.0 32 ............................. TCTCCCCAGGTCAGATAGAGGCCATCAGGGAG 22674 29 96.6 33 ............................G CAGGCCCCCACGTCAACCCCTGCCACGTCGAAG 22736 29 100.0 32 ............................. TGTGACGTCGCGCAATGGCAAGGTCTGGTACA 22797 29 96.6 32 ............................G TTGGCTGGTGCATCTTCGAATGGGATGTAGTT 22858 29 96.6 32 ............................G CGTCGGATGTGTGCGAGGGCTTCTTTTTTGGT 22919 29 100.0 32 ............................. ACAGGCGGTTGCGCTGATTGGACTAGGAATCT 22980 29 100.0 32 ............................. CTCAAGGCCAGAGCTGGAAAAGCCGACGCCGG 23041 29 100.0 32 ............................. AGATCGTTAAACCAATCTGCTTGCTTTGCGGA 23102 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 34 29 98.4 32 GTTTTCCCCGCACCAGCGGGGATGAGCCC # Left flank : CTTACTTGGAAAGAAGCTGAGGCATTGGCTGGAAACACAGTGCGTCTGCCAGCCCAAATGACACGTAGAGATTCGGATTTTAATGCCGTTATTGATTCGCTCGAAGCACAAACACCACCAGAATGGCAACGATCCGGTTTGCTTAAAGGCCAAGTTGCGTTGTTTTTCGACGAAAGAGGAGAGGCTCGTTTAGGTCGATTCCTAGTGCGTTATACCAATGAACGTGGATTAGAGGTGGAGGTCTGCCCAAAGGAAGACGCATAAAAGGAAACCCCGCTGGTGCGGGGAAGTATGCCTATGTAAATCTTGTAGAGATATTAAAAAGGCTCATCCCTGATCGCAGGGAACAATGCCAGCCTATGGCTAGAAGAAAGGACTAAGCAAATTTGGGTGAATGGCTGATCCTAAAACAGTAGAAATAAAGATGAAGCAGAAAAATTGCTGAAACAAAGTTATATGTAATAAGCTCTAACTGGCTCTAAACGTGCAGCTTGATAAGT # Right flank : CAGGGACTTTGAGAACTGGACCGCCGTGATTCCTTGCACTAGCAGGGTGGATGAATCTTTGTTGAAGAACGGGTTTTGGGATCTGTGTTTTCATTCAGAGAAATCAGTAAATGATGGGTCTACTAAAAAATTTTGAAAAAATTAACTTTTAATATCTATAAGGTGTATTCTGTAGAGAAAGTGCTTCCTAAGTTGGGAGTTTTAAAACAATCAGGAAGGAGTTGGTGGTGGCTTCGTTACTGGAGATCCGCTGGATTCTGGCTCTTGATACTCAAGGTAACCAGATTTCAGTTGGAATACGAGATATTTTCGCGGGGGAGGTGCAGGTTGCCTATATTCAGGGGGAGTCCCCAGCTCAAGACTATGCTGTGATGCGGCTTTTGCTGGGTATTTTCTGGCGTGCCCATTCCATGGATATCGACATGGACGTGGAACCTTTTGATTTTCTTGAATGGTTCAACAAGATGAGACGTCAGCTTGCTCGAAAAGGGAAAGATCAG # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACCAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //