Array 1 62855-62020 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPYI010000002.1 Streptomyces sp. RM99 RM99_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================ ================== 62854 35 77.8 36 C..TA..C.T....C..-.....T............ TTCACCATGACCATCCCTGGCTGGGGCACCACCCTC 62783 36 86.1 48 ..A....C......C..G.........A........ GCCGAGGAATGCGTCGCCTTGGTCGACCGCTTCGTCGACGCGGTTACG 62699 36 80.6 36 .A.....A.T....C..GA..G.............. CCCGGCCTGGGTTTTGCCGAGGAGGACTACCGCACC 62627 36 83.3 18 .......C......CA.GA.A............... GACCAGCTCACCGTCGGC Deletion [62574] 62573 36 86.1 39 ..A.......T..T...G....T............. ACCCCCAACCCGGGTTAGAACGAGGAAGTGGCGTACACG 62498 36 75.0 37 ....C..C...TC.C..GAT....A........... GGGAAGTCCTGCCGGAGGACGGCGAGAGTGGGAACCC 62425 36 86.1 39 .......C.....T.A.G.T................ ATCCGCACCCACGCGTCGTACTGCGCTCGCGGGTACACC 62350 36 91.7 37 .......C......C..G.................. AGCTTCACCTACGGCGTCGGAGAGGACGGCCGGGTCA A [62331] 62276 36 83.3 38 .......C...T..C.TG....T............. TTGTGGACGTGGATCTCGTCGATGATGCCGCCGTGCAC 62202 36 80.6 37 .......CT...CT.C.G......A........... GACACCGGCCGCGCCAGCACTGCATCACCGCCGGAAA G [62192] 62128 36 86.1 37 .......C......C..G...G.........A.... GTGGTGCCGTAGTCGATGCCGACCCAGTGCCGGCGCC 62055 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================ ================== 12 36 84.7 37 TGGCGGTTGCCCTCTGGAGCGACCGAGGATCGCAAC # Left flank : CCAGGCAGGACAACACTCCAAGGACCCCAACGGAGCCACCGGAGAAGTCATCGAAGCGTTGCGAGCAAAGCTGCACTACCCGGAGGTCGCGCACAGAATGCGGATCATCGACAACGAACACTCCGTGGCCGTGGTCGTCATCCGCCCCCAACTCGAAGAAGAAGCCCGACAGGTCGCCCAGAAGGCAGTCGACCAGCTCCGCCGCGGCCTGCCAACGCCGGTGACCTACCGCACTCTGCAGGAACACATGGCATCCATCCCCGAGCGGGAACTGGAGCTGGCGATCAACGCCGACCACGCCATCGAAGTCGCCGGTGACCTGCACCAGTGGGTCGGCCCCTACCACCCCCAACGAGGCATCGAACCCCCTGCATGATCATTCAGACCACCGAGCAACGCCGCACCAGTACGCTGGCGGAACTGGAGCCAGCCGACTGCCGAAGTGCGGCGATCAGCTTGCAGCAGTGAAAATTCGAGTGCTTGGAAAACCGAACCCGTCG # Right flank : CTCGTCCACATCACCCGTGCCCGACTCCGTGGCACGACTGGCGGTCGTCCTCCGGGGCGGCCGGGGACGTCCCCGGCCGGGGATCGAGAGCCCCGCCGGTTGGCTGGCCGTGGGCCGGTCGGAACAGTCAGGGCAGCAGCAGCGTGTGCGCTGCCACATCGATGGAGGCACGTGCGGCGGGCCCCGGCCGACCGGACCCGGAGGGCGACCTCCCCACCACGGCCCGGACAAGAGCCTGTTCCCAATCGGTCATCACGCGCACGCCCGGGTCCAGGATGTCGTCCTCGAGTCCCCCTCGTGGTCCAGGCGCTGTTCGTCGGGTTGTGCGCCATCGCACCGGCGGACCGTACGACCCGGAAGCCCGGCGTGCGGCTGCGCTGGTCGATGAGGCGGGAACGGTCGCGGAGGTGTTTCGCAGATCCGACCTTTCGTGTCTGCGGCCACCCTGCGCGGCCGGTTCCTCCTTTGCGCTGCTGGAGACACTGCCGGATGCGGCCCCA # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.24, 5:-1.5, 6:0.25, 7:-0.09, 8:1, 9:0.18, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGGCGGTTGCCCTCTGGAGCGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.70,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [18-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //