Array 1 1974710-1973461 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP041628.1 Escherichia coli strain PE15 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1974709 29 100.0 32 ............................. TACTAAAAGTCTGGTTCACGAATATCAAAAGG 1974648 29 100.0 32 ............................. ACGGCTTCATGTTCTTGGTGATGGGGTTCACC 1974587 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 1974526 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 1974465 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 1974404 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 1974343 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 1974282 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 1974221 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 1974160 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 1974099 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 1974038 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 1973977 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 1973916 29 96.6 32 ..........................T.. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 1973855 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 1973794 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 1973733 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 1973672 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 1973611 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 1973550 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 1973489 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2004393-2002777 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP041628.1 Escherichia coli strain PE15 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2004392 29 100.0 32 ............................. AGCACAAATATCATCGCTCAAACCACTTACGG 2004331 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 2004270 29 100.0 32 ............................. AAAATAAATGATAATCAGACGGTTAGCAACGT 2004209 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 2004148 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 2004087 29 100.0 32 ............................. TATTCGTAGGGTTTGCGCCGGAAATAGGCGCT 2004026 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 2003965 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 2003904 29 100.0 32 ............................. CGCCACCAGCGATAGAGCCGCAAACAGAGCCG 2003843 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 2003782 29 96.6 32 ............................C AGGTCCTCGTCAGATACAGTAGTCACAACACC 2003721 29 100.0 32 ............................. CACTGACAGTGAAGCTGAATTACAGGCAGAGG 2003660 29 100.0 32 ............................. CACTGACAGTGAAGCTGAATTACAGGCAGAGG 2003599 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 2003538 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 2003477 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 2003415 29 100.0 32 ............................. CAGTTGAAGCGCTTTAAAAAATTCTGGACGGC 2003354 29 100.0 32 ............................. AGATCGACATGAGCCGCCGCGCGACGAATAAC 2003293 29 100.0 32 ............................. TACCGATAATCGGTACAAGATAGTATTTACAT 2003232 29 100.0 32 ............................. GACTATCGCGGGCTGCTGAAATCAACCGGCGA 2003171 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 2003110 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 2003049 29 100.0 32 ............................. ACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA 2002988 29 100.0 32 ............................. AGCAGATACACGGCTTTGTATTCCGTGCGCCC 2002927 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 2002866 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 2002805 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //