Array 1 10245-9850 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHQN01000285.1 Streptomyces sp. WAC01526 AA000092-285_WAC01526, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10244 29 100.0 32 ............................. TACGTGCGGTCGTAACCCGTCCGCGTGGACAG 10183 29 100.0 32 ............................. GACCTTGAGTCTGGTGCGGACAGCGGGAACCC 10122 29 96.6 32 ..........T.................. AAATGAGGCTCCCCGTGAGCATCGACCTTACC 10061 29 100.0 32 ............................. CTCAGGCCGTGCGGCCACGCCTCGGCGTCGAC 10000 29 93.1 32 .............G..........C.... GGAGAGGTGGCTGAAGTGGCCGGCGCCCCGGA 9939 29 89.7 31 .............G..........CA... ATGTTCGCAGCCGCCACGATCAAGATGATCG 9879 29 82.8 0 ...........ATT..........CG... | T [9875] ========== ====== ====== ====== ============================= ================================ ================== 7 29 94.6 32 GTCCGCTCCGCGAACGCGGAGATGTTCCG # Left flank : ATGGGAAAGCAAGCCCTACGCCCCCCTCCTCGACCGCATCGAAACCGGACAGCGCTACGCCTTCCGCCTCACTGCATCCCCCACCTACCGGCAGGCGTCACCCGCACCCAATCAACGCGGCCGCCGCCTTCCCCACACCACTGCACGCCACCAACTGCGCTGGCTCACCGCCAAAGCCTCCAAGCACGGATTCACCATCCCCCCAGCAGGCGGCCCGAGCGACATCGGCCCCGACGGCGAAATCCCCCTCCAACTCCAGCTCCGCCACCGCGGCAAGAACACCTTCGGCAAACACGACCACCAGGACAAGCCCATCCGCGTCGCCCTCACCACCGCCACCTACGAAGGAGCCCTCGACGTCACCAACCCCCAAGCCCTACGAACCCTCCTCACCACCGGCATCGGCCAAGGCCGCGCCTACGGCTGCGGACTACTCACCCTCGCCCCCCTCAAGAAGTAAAGAACAAGCAATGCGCTCCCAACAGCGCAGGTCGCGAAGG # Right flank : CACCATCAGATCAACACACTTTGAATCAGCGCTGCGGTCCGAGTGATCGCGAGTCGTGGGGTCTGGGTATATCGGTTGGAGTACCTGCGCGCTGGGCTCTGGCTCGTGAGAAATCGGATCAGGGTGTCCGGCTTGTCCTTTGCCGATCGCCAGTGCGGGGTGTACTGCTGCCGGGCTGTTGAGGCGTGTCCCGAGGTGAGCCGTGCCGTGAACTGGGCATTTTCTCACCACTGACCGCCTCGACGGCCTGGTGGCGAGGGTCGGCAGGTTCACACGGCAGGAGGTGCGCCATGACTAGTATCCCAAGTCGCCAACCTCGACCACCTGTTGTGGATGAGGTGGTCCTAGGTGTGGACACCCACCGGGATGTTCATGTGGCCGCCGTGCTCTCCACTCTAGGGGCGGTCATGGACAGCGCGTCGTTTCCCACCACGGCGGTGGGCTATCGCGAACTCTGGGAGTGGGCCAGCCGGCTGGGTACGGTGCGCAGGGCCGGGGTG # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTCCGCGAACGCGGAGATGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCGCTCCGCGCACGCGGAGATGTTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.00,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2334-2946 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHQN01000397.1 Streptomyces sp. WAC01526 AA000092-397_WAC01526, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================================== ================== 2334 29 100.0 32 ............................. CGAGGCAGGTCCTTCAGGACCGGGTGGCCGTC 2395 29 96.6 32 ............................C TACTCCGGGGCGAACTCCCAGCTCAACCCGGC 2456 29 96.6 32 ............................C CTGGCCTACAACGGGACGGGGCGGCCCGAGCC 2517 29 100.0 32 ............................. TCGCCTCGGATACGGGCGAGGTTGGCCATGCC 2578 29 100.0 32 ............................. TCCTCGCCTGCGATGTCCATCAGGGTGCGGGC 2639 29 86.2 32 A...........T...C.......T.... GGCCGGCTCGACGGCATCGTCTCCGTCGGCGG 2700 29 89.7 31 ..G........................GT TCAAGCCCAGTGCGGAGGGGGCGGTCGTCGC 2760 29 82.8 32 A.......G..C....C........A... CAGAACTGGCACATCACCCGGTCGTCCGCCAG 2821 29 79.3 67 ................C....GC.AG..C GTCCGTTGTTCTATCCGCGTAGGCGCTGGATGTCTGTCGGTGTTGTCCGGCAGATCCTCATGTGCTT C [2844] 2918 28 75.9 0 ...G...T.....G.-...C.G.....G. | G [2921] ========== ====== ====== ====== ============================= =================================================================== ================== 10 29 90.7 36 GTCCGCTCCGCGCACGTGGAGATGCTCCG # Left flank : GAAAACACCCCGCAGGTCCAGGCTCTGGTACGGCTCGGCAAGCCCTCGCTGGAGGTAATCCTGCTGCGAGCCGGCACCTCGGAGAGCATCGCGATGCCCGTCTCCCAAGGAGCCGATGCATCGGTACCGCTGGACCGGCTGCCGGACGCGCAAGGCATCGAAACGGTACTGGACCAAGCCATCCGGCTTCCGAGCTGGTCGGACAAACTGACGGCCGCAGCACGCGAGGCCGCCTTCACGCCGGAACCGTGGAAGAAGTCCTCCTGGCTCAACTCAGCCCAAGTCCTGTTGCTACCCGCCGACGGCCAACCTCTGCGACTAGGCGGCCTGAACCTCACCTACTGCCCCACCGAGGGACTTACCGTAGCCTGACCCATCCCCAGCTACACCCACTGCAGGCATGGCATGGCAAGGAGGCTCAACCCCAACCCTCGGAGCCTTACATCAAAGAAGCTGGATAACAAACAGCAAAGCCTGTACAACGGGGCAGGTCATGAAGG # Right flank : GCCGGACTGTCCCGTCTCATGACCGGTTTCGCCGCTCGTTGTCAGTGGGTCCGTGTAGGTATGTAAGTCGGAGCCGGGCATCAAACGCGGCGCGGCTGCCGGGTAGTTCGTCATGCCTACGTGGTGGAGCGCTATGGAGTTCAATCTGGTCGACGACGACTGGCTTCCGGTTGTTTTCGCTGACGGCAGCACGGGGGAGGTGTCCCTGCGCGATGCGCTGTTGCGCGCGGCTGAGGTGCGGAGCCTGGCATTAGACAGTCCATCGCAAGTCCCTCCGGTGATGAGGTTGTTGCTGGCTGTCGTCCATCGCGCCCTGGACGGGCCAACTGGGGAGCAGCAGTGGTCTTCCTGGTGGGAGGCAGGCGTGTTCGATGCTGCGGCGATCGACACGTACCTGGATGAACACCGGTCGCGGTTCGGCCTGTTCGACGAGTGCGCGCCTTTCATGCAGGTGGGCGGGTTGGAGGCGTTGAACGGCAAGACGAAGACGACGGCGCTGC # Questionable array : NO Score: 5.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTCCGCGCACGTGGAGATGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCGCTCCGCGCACGCGGAGATGTTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.70,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 29753-29086 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHQN01000042.1 Streptomyces sp. WAC01526 AA000092-42_WAC01526, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================================================================== ================== 29752 29 89.7 32 ..A........AC................ GTCGGCTTCAGCGCCTACGACGCAGACGGGAA 29691 29 100.0 33 ............................. GGCCAGGCGTGTGGAGGTCCCCACGTCCCGGGC 29629 29 86.2 32 ...T......T.C.........G...... AACTCCGGACATGTTGCGTCGGCCGAGCGCGA 29568 28 82.8 32 ...G...T..G....-.....C....... GCGGGGACCAAGCGGGCCGTCCGCGGCGCGAA C [29557] 29507 29 79.3 120 .......T..T.CG..........G.T.. ATCCTGGTCAGGTAGTGCCTGCGGGGAGCCGTGTGGCCCGGTAGATTCAGGCGGGTCCATGACCGACGTGCCTTGAATCACGAATCGGCAAAACACTCCTAACGCTGCAGGTCGCGAAGG 29358 29 100.0 32 ............................. GACAACCGAGCGCTCTACCTCCTGCCGGCGGA 29297 29 100.0 32 ............................. AGCCCGATGAAGACGTAGTCGCTCCAGGCTGT 29236 29 100.0 32 ............................. CTCAGGCCGCTTGGAGGCACCGTCAGGCGATC 29175 29 100.0 32 ............................. CCAGTCCTGGGGTGGATAGCCGATAAGGCCAA 29114 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================================================================================================== ================== 10 29 93.8 42 GTGCTCTCCGCGGAGGCGGAGGTGAGCCG # Left flank : CCCGCCGGCAGTGCTGATGGGGTGCGCGACGATCCCCCCTTCGCGTGGACACCGTTCCCGGACACACACCATGCGAGATCAAGTGAACGCGCGCCATCTCGTTGGAGTCCTTCTCTGGACAGTGCCGGATCGACGGCGCCACGCCGGGTCAGAACGTACTCCATGCGTCCAACAAAGGTGTTCAGAAAGTCCGGCTGTTCAGAAACTCGTCAACACACCGATGAGTCGGGGCGCCAGTCTCCGATCCTTGGGCTGCGGCAGCAACACTGTCAGGGCGTCGAGGACGTCGCCGGGCGTGCGTAGCTCGTGCACGGCGGCCGTGGCGCCCGTCCGGGAGGTGTCCCGCAGGCGTCTGTCCCTGCGGGCCTGCTTCGCACGCTTGGCGTCTCTTCCCATCCCGGCCTCCGTCGATCGGCGTGTGTCCCCGCAGGGAGAGTGACGCGCCGGCCGGGGCGGTCGCCAGGGTCCCCCGGGCGATGATCGGTGATGCGATCGTGGAC # Right flank : GGGGCGAACGGGCGCTTGCCGCTCCCGCGCCCACACGCTGGCCATCGCCACTACTGTCCAGAACGCGGAGCGCAGCCCCCTTTTGCGCTGCCTAGTCGGCGTGTGGAGCAAGCCGGCGAGGGCGCGGCACCGGCGCGGCGGATTTCGCAAGGCTCGTCCCGATGCGGACGGTCAGTCGGCTTGAGCCTTCGCGGGGTGCGATGCCCGGCCGGACCAGGTTGAAAACTTCCCGGGCAGCGTAGCGTTTCAGGCAGCGGATGATCTCGCGCCGGGTTTTGCCCTCCGCGATGCGCCGCTCATAGTAGGTGCGGGTACGCACATCGAACCGGAGCCGTGTCTGCACGATCCGATACAGGGCGGCATTGGCTCTTCGATCGCCGCCGCGGTTGAGGCGGTGGTGATGCTGACGGCCGGAGGAGTACTCGACGGGGCTTACCCCGCAAAGCGCCGCGAACGACGCCTCGCTCCGCAGCCGTTCTGGGTTGTCGCCCATCGTGATC # Questionable array : NO Score: 5.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:-0.89, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGGAGGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGGAGGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.80,-11.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 33938-31572 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHQN01000042.1 Streptomyces sp. WAC01526 AA000092-42_WAC01526, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================================================================================================================================================== ================== 33937 29 100.0 32 ............................. TCGAAGGCGAAGACCGGCAGCGCGAGGGACCC 33876 29 96.6 32 ................T............ CTGCGGGTGGTGATCACCTCCACACAGACCCG 33815 29 96.6 30 ........................C.... CAGCGTTGCCCGGCCTCGAACCGGAACATC 33756 29 89.7 32 ...TG...................G.... CCCTCGGAGCGGTCGCCGAGCAGCTCGGCGGG 33695 29 100.0 179 ............................. AGCTACACCGGCCACGCTGAAGGCGACGAGAAGTGATCTTCGCAGGCAGAGGTAGGTCGTTCCCGGCCAGGCAGTGGCTGCGAGGAGCCTTGTGGCCCGGTAGATTCATGCGGGTGCATGACCGGCGTTCCTCGAATCACGAATTGGCAAAGCGCTCCGAACGCTGCAGGTCGCGAAGG 33487 29 96.6 32 .........................A... AATATCAGGAATCTCCGCTTCGCTACAATTCC 33426 29 96.6 32 .........................A... TTATCCACAGGGGCGGTAGCGGGGGTAGCGGG 33365 29 96.6 32 .........................A... CCGCTATGTGAACCCGGGGATCATGAGGCAAG 33304 29 96.6 32 .........................A... AAGCTGCTTGACAAGGCAGCGCCGGAGGTCGG 33243 29 96.6 32 .........................A... CCGTGGTAGAGGAGGTTCCACAGGAACCACCC 33182 29 96.6 32 .........................A... TGGTGGAGGGTTTGACATCCTCGCTCCCGCGA 33121 29 96.6 32 .........................A... TTCCAGTCCGTGCTGGACAACCCGGCCGTCAC 33060 29 96.6 32 .........................A... CCCACATATCCGAGAGGACGAACAACATGACG 32999 29 96.6 32 .........................A... CTGATGGCGCCTTGGCCGGCGGGTTCGCCGTG 32938 29 96.6 32 .........................A... CTCTTCGAACGGTCGCTGGCCTCAGCGGTCTT 32877 29 96.6 32 .........................A... GCCATCAGGCACCCCACGCGCCGTTCTGACGG 32816 29 96.6 32 .........................A... GCGTGGCGGCCGGCCGAAGGTGGCGAGGCGAC 32755 29 96.6 32 .........................A... TCCTCGATCCGCTTGACTCCCGGAGGACGCAG 32694 29 93.1 32 .........................A..T GCACGTAGCCGTGGAACAGCCGGGTGGCGGGC 32633 29 96.6 32 .........................A... GTCGGCCTCGGAGTCGCTTACCTCGCAGTCGA 32572 29 96.6 32 .........................A... TGCCCGCTGACCAGGATCTTGGCGTCGGCGAT 32511 29 96.6 32 .........................A... GAACCGGAAGGTCTTTCCCGAGCCCATGGGGC 32450 29 96.6 32 .........................A... TCGAAGGGGTTGCTGTTCCCGCCGGGGTACGT 32389 29 96.6 32 .........................A... TCGACCCAGACTGCCGGGTGCGTGCCCGAGCC 32328 29 96.6 32 .........................A... GTGTGTAGGGCTTCGAGTTGGGCGCTCATGTC 32267 29 96.6 32 .........................A... GCCGCGTACGCCTCCAAGCCGGCCGCTCCCAC 32206 29 93.1 32 ........................CA... GACATGCCCGGTGGCATCGTCGTCCGCTTCGT 32145 29 96.6 32 .........................A... CCAGCTCGGCGAAGGCATCGTGGTCCGCGACG 32084 29 96.6 32 .........................A... TTGATGGGGGACGTGACGGTGGAGCGGTAGGG 32023 29 96.6 32 .........................A... CTGGTGCGGGCGAGGACGTAGCGCGGTGAGGA 31962 29 96.6 32 .........................A... TCCGCGCTGGTCAAGCGCATGTGCATGGTCTA 31901 29 96.6 32 .........................A... GGTCGCTTGTTCTGACCGGCCACCACCTGTGG 31840 29 93.1 32 ........................CA... CGGAAGGGGCAAAACGACGGCGATGATGCTCT 31779 29 89.7 26 ......................C.CA... GGTATCCGGCGTCCGGACGATCGGCG T,C [31752,31756] 31722 29 93.1 32 ........T.....A.............. GCGCCGCGCGGCTTCGGTGGCCTGCTGCTCGG 31661 29 96.6 32 .............C............... TAGGGGGCGTTGTCCTCGATGCGGTCCGTCCA 31600 29 89.7 0 .C......................C.T.. | ========== ====== ====== ====== ============================= =================================================================================================================================================================================== ================== 37 29 95.8 36 GTGCTCTCCGCGCAGGCGGAGGTGAGCCG # Left flank : AAACAACTTCGACCAGGAAAGACGTTCTCACTCACGCTGACGGTTCCTCAAGACACCTATGAGTCGCCTTCACCGCCGAAGCTGTTCGATCAACGAAGGTCAACCGTATCGGTCTTGGGAAGGGAGCGTGTGGTCGGGCGATGGCGCGCAACGGACATGAGCTGCCTGCTGGGCTGCGGTCCGCCGAAGCGCCCCATAGCCTGCGTGCCTCCCTGCTGCTCGCATCCGCCGTTCGCTGGTAGACGTCGCGTCGGTTGTCGCGGCCGATGCCAGTGTGGACGCGGACCTGGCTGTGGCCGTTGAGGCGGAGGTTGCTGAAGCGGTAGGCGTGGCCGACAACGCCCCCAATCAAGGCACTGGACCGATACATTCACAGGGGTGCACAGCACACGTTCCTTGATTCAAGAATCGGCAAAGCGCTTGCAACGTCGCAGGTCGCAAAGGGTGCTCCTAGGCGGAGGTGAGCCGTTCGGATGGTTCAGGGCTGCGGTTCAGGCGAT # Right flank : GCGCTGCCGTACACCGTCGGGCCGCCCTCGCCTCCGCCCCGGACAGCCGGCTCGGCCTCCGCGACCGAGCCATCGTCCTGCTGCAGTTCGCCATCACCGGCCGGGAACACGAAGTCGCCTACCTCCGGCTGCGCGAAATCGTCGAGACCGAGCACGGGCTGGAGATCGACGTCCACGTCTCGAAGATCAGCCCTCGCAAGCTGAAGGTGCCCTTCGGCTCCCGCCCCTTCACCTGCTGGCTGACCGACCCGGACGGCTTCGCCTTCCGCGCCTGCACCCGCGCTGGCACACCGTCACCGACGCCGGACAGTCCCTGGAGGCCATCGGTGACGTCACCACCCGGCTCACCTTTCGCGCCGACCTGCCCGTCCGCCACACCGGCCACTCCCCCCGCCACGGCGCCGCCGAAGAGTCCCGCCGGCGCCGGCAACGACCGCAAGACCATCGCCAAACAGGGCGGATGGGTGCCGAATTCCGGCGTTATGGAGGGCTACTTCGAG # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCAGGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGGAGGCGGAGGTGAGCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.80,-11.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2733-2399 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHQN01000467.1 Streptomyces sp. WAC01526 AA000092-467_WAC01526, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2732 28 89.3 33 ..C.G....................A.. GTTCACCGGCCACGTGATCAAAACGGGCATGAC 2671 28 100.0 33 ............................ GGCCACCGAGCGGGGCGAGGACGCCCCGGTGAA 2610 28 89.3 33 .............GA..........A.. GGACCCAGAGTTCGTGGCCGTCGACTACAGCGG 2549 28 85.7 33 ..TT....T..A................ GCCGCCGATTGCGGAAGTGCTGGAGCACTACGG 2488 28 89.3 33 ..C.....................TC.. GCGGGTTTCCGGGTTAAACCAGGTGCCGTCCCA 2427 28 67.9 0 ..C.G...T...TTC...A.....T..A | G [2402] ========== ====== ====== ====== ============================ ================================= ================== 6 28 86.9 33 GTGCTCTCCGCGCAGGCGGAGGTGAGCC # Left flank : CCCTCCTCGTCCAGTCCACCGGCATCACCATCAACCGCACCGCCCTACCCGCCGGCTACACCACCAACCCCGTTGAATACCGCGACCTCACCCCGCTCCTGGGCTGGCTCACCCCCGGCACTGCCGTCCGCTACCGCATCGATGCCAACCCCATCAAGGCCGTCTTGGTCCCCGGGCGCCGCGGGCGCCGCACCGCCCTCCGCGGCGACGACGCCGTCATCTGGTGGCAGCAGCGCGCCAACCGCAACGGGATCGATCCCACCCTCATCCTCGACAGCCCCAACGCGCCCGTACTCGCCAGCCGCAATGGGGCCCAGCGCGCCAAAATCGCTTCGGTGAGGTTCGAAGGCATCGCCACCATCACCGAGCCCACAGCTCTCCGCCACGCCATCACCACCGGCATCGGCCAGGGCCGCGCCTACGGCCTCGGCCTTCTCTCCATCGCCCCCCACCAGCACTAACGAAATGGCAAAGCGCTCGGGACGCCGCAGGTCGCGAAG # Right flank : AATTCATCGCACATCTGATTGGAGAACTACCGTGATGCCTCCGCCTGTTGATCATCGACTGTGGGGTAAATGGAGTGGCTTGGAGGACACGGGCGCCCCATACCCGGTGGTGTGTCACCTGATCGATACGGCGATGATCGCTGGCCGCCTGTGGGACTCCTACCTCACCGCCGGTCAGCGACGCGTCATTGCCGCCGGGTGGGGCGTGAGCCAGGAGCACGCCCAGCAACTGATGATGTTCTGGGCCGGACTCCACGACCTCGGGAAACTATGTCCGTCGTTCCAGTACCAAGCCCCCGAGGGCACGGCCGGTCTCCTTGACGACCCCCGCTACAAACCATCATCGGACGACAGTGCGCTCAAGCATGAGCGGGTCTCGCACCTCACCGCCCCGGCGCTCCTGGTCCAGCTCGGCTACCCCACACATGGGCGCCCGCTCCGGTCGATCGCCCACCAAGTAGGGCAGATCCTCGGCGGCCACCACGGCACCTACAGCCAGG # Questionable array : NO Score: 3.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCAGGCGGAGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCGCTCCGCGCAGGCGGAGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 306-593 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHQN01000601.1 Streptomyces sp. WAC01526 AA000092-601_WAC01526, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 306 29 96.6 36 ................A............ GTGAACTGCTGGTCCACGTGCCTGCGCTCCGCCTCC 371 29 100.0 36 ............................. TGGAGCACCGTGAGTGCGCCCAGCAGCAGTGCTGCA 436 29 100.0 36 ............................. ACCTCACCCATCGTGTACTCGCGTTGCGGGATGAAG 501 29 100.0 35 ............................. AGATGTGCCCAGTGCTGGGTGGTCGCCTCGCCCTC 565 29 96.6 0 .....................C....... | ========== ====== ====== ====== ============================= ==================================== ================== 5 29 98.6 36 GACGTCATCGACCCTGGAGGGTTCGCAAC # Left flank : GCCCTGGGATGGCTCGGCGCCCACCACCCTGAGACCGACGTCGTTCACCACGACAAAGCCCTCATGGGCTCCTGGACCGAGCCGTCGAGCACGAGGCGGGTCTAGGGGGCAGCGGCGGTGGGTGGCTTGGCCTGGAGCCCGGCGCTGGAACTACAAGTAAACGTCCGCCACGATGGACAGAATCACTGAGGGCATGTCGCGGGCTCAGCGCACTGAGCTGGGGTGATGCACTACTGACGGGCCGCTGCACACGACGGCTGAGGACTACGGGGTGGCACGATCTTGAGCTGGGGCTTTACTCTCGGG # Right flank : CACGACCTGCTGGGCGTCATGCTCGCCGAGCAGCAGCGTCGTCATCGCTCATATCCCCTTCGGGATTCGCGGGCCACTTTCAGCCGGCCCAACGCGTCCGACAGGCGCAGGGTGGGAGCGCCTGGCCGCAGAGTGCTGGCTCACCTCCGCCTGCACGGAGCACCACTACCTGCGGACCGCGTCGAACGTCTCGTCCACTCACATCCGCCTGGGCGGAGGTGAGCCGACATCCATGGTGACGGCTCGGTTCAGGGTGTTGTGCTCTCCGCGCAGGCGGAGGTGGGCCGGATCAGCGCCTGCTTACCCGAGGACCAGTCGAGTGCTCTCCGCGCAGGCGGAGGTGAGCCGGAAGAGCCACAGGTAGAGCCGGTGGCTTCCCTCATGCCCTCCGTCCCGAAGTCGACCAGACCGCCCCCGCACAGAAGCCGAGCACGCCGCGGACGACTGAGCTGCACGCTTGTGTGCTCCACCCGAGCCCTTAAGGACCTGGTGCCCGCGCG # Questionable array : NO Score: 2.99 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GACGTCATCGACCCTGGAGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 1 1587-401 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHQN01000672.1 Streptomyces sp. WAC01526 AA000092-672_WAC01526, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1586 29 100.0 32 ............................. CGCCACGCCCGTGTGCTGCTCCACGTCCCAAC 1525 29 96.6 32 ................T............ GGTCGGTGGGGCTGGGACCGGTCGTACGGCTA 1464 29 96.6 32 ...A......................... CCGGTCAATTTCATCATCAAGTGGGTATACAC 1403 29 86.2 32 A..T........C...T............ CCGCGCATGGACATGAAGCTGATCAGCGAGCA 1342 29 79.3 32 ..........T.C.........C.CC..C TGCGGGTGCGCGAGGCCGAGCTGGTGGGTGTC 1281 29 86.2 32 .C......T...C.T.............. ATGCCGGTGAGGCACTGGCCGTCGCCCACGCT 1220 29 96.6 32 ...........T................. CTCGGTCGCGGCAAGTCGGCCGGTAGCCTCGG 1159 29 86.2 29 ...........AC.G.........C.... GCGGGCTTCTACTGCAGGCGCTGAGCAAG 1101 29 69.0 32 AA.GT..G.T.A...........A....T GTGACCCAATTCGCCCTGTATTATGGCGTGTC 1040 29 93.1 33 ...T.......A................. CAGAGGAACAGGGGCGTGGAAGCTTTGGTCCAG A,A [1021,1023] 976 29 79.3 32 AG.AT...................C...C CACAAGCCGAAGTTCGGGGGGCAAGACGAAGG 915 29 79.3 32 A..T....T...C...........C.T.. TACAACGGCAGTTGGAGCGGATACCGCCACTA 854 29 86.2 31 ...........A..GC....A........ CAGCATGCCGCAATCGAGAACTCGGTGACGG 794 28 89.7 32 A...........-.G.............. ATCATCACCATTTGGACGAACCCGATCAGCAG 734 29 93.1 32 ....A.......C................ TCCTGCTGCGTCATGGAGTACTGGGCCTTGGA 673 29 86.2 30 ............C.........AC....C TGCGGCGACCATTGCGAAGGCCCTGGTGAG 614 29 100.0 32 ............................. GAAGCCGCCGCCATCGCCCTGCCCACCACACG 553 29 79.3 32 C..T.......T............CC..A TACGCGGCGCCGGGGAAGTTCATGCTGGGGGA 492 29 93.1 32 ............C..........A..... TCGTTGGTGAACCCTGCGTACGTGACCGTGTG 431 29 69.0 0 ...T........C......G..GA.GGGC | GC [406] ========== ====== ====== ====== ============================= ================================= ================== 20 29 87.2 32 GTCCGCTCCGCGTACGCGGAGATGTTCCG # Left flank : GCCCGCCGCTGCACATCCAGGCCGGCGAAGGGCGGAGTGGCCTTGCCAAGATCATGCTCCGCCGCCAGCCACGACAGCCGCGCCCGGGCCGACTCCTCCCTCCCGTCAAGATCCGCCGCCAGCAGGCCCCGCACCTGCTCCGCCAGCAAGTGGTCCCACAGCCAGCCACCCGCATGCCCGCTGTCCCACACATGCGCGATCAACGAATGCCACATCGCGCCAGGAGGCTCTTCACGCCCCCAGCCCCTGCGCCACGTCTTCGCCCACAACAGCCCAGCCAGACCAGAAAAATCCGACACTCCGCCTCCCCATGGAACCAGCCCCCAGTTCTACCCGCAGCCACCGACAACCAGCTTGCGAAGAACCCGACCAGAGCCCATCCCACCCCAGACAGCGCTACCGTGAAGAGGCAACCGGACTCCCTGAGGCCCCATGCATCCCACACAGCGCACCTTGATATCGAAACAGCAAAGTGCACACGAAAGGCCAGGTCGCGAGGG # Right flank : CGCCCGGCATAGCCCTACGAGCATCCACGCCACCTGGGACGGAACAGGGAGCGTGGAAGACGCTTCTAAGGCGTTGGGGTTCTCGCGGGCGAAGGGGTACGAACTGGCTCGTCGCGGGGAGTTCTTATGCCGCGTGCTGCGTCTCCGCCGTAGCACACGTGTCGTCACCGCGTCCCTGCTCCGCGTGCTCGAAAGTGGAGAGCCGGAGTACAACAGCGCCCAGCCTGCCACTGCGCCGTCATAGCCCGCCGCGCACAGAAGCCCCGCCGAGCGTGGCGGATTCCAGGGGTCGTTGCAACACGTGGTCGGTTGATCAGGCCGCGAGCAGTTTATGCAGGCGCTCGGCTGGGGTTTCCCAGTCGAGCGTTTTGCGTGGGCGGCTGTTGAGTTCAGCGGCCACG # Questionable array : NO Score: 4.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.41, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.17, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTCCGCGTACGCGGAGATGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCGCTCCGCGCACGCGGAGATGTTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [12-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4936-3933 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHQN01000201.1 Streptomyces sp. WAC01526 AA000092-201_WAC01526, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4935 29 100.0 32 ............................. TGCCACCAGCGGCCGTCCGACCACTGGTTAAT 4874 29 96.6 32 ........................G.... ATCTTCGCAGGCTCCCGCATCAGGGACTCCCG 4813 29 96.6 32 ........................G.... AGGTTCGCGCGCTGTTGAAGCGTGTCGGTCAC 4752 29 96.6 32 ........................G.... GCCCTCGGAAGGCTCTTCAACGCGACGCCCGC 4691 29 100.0 32 ............................. CTCGCGCCCCTCTGGGGCCGGGCCCGATCCAC 4630 29 100.0 32 ............................. GAGTCTGGTTGGAGGTGGAACGCGGCCAACCC 4569 29 100.0 32 ............................. TAGCCCAGGACCCCGCCCGCGGCGGGCGTCAT 4508 29 100.0 32 ............................. CCGTCCTCGGCCTGTTCCTCGGTGGGCGGGTG 4447 29 96.6 32 .......T..................... TCGGGGTCGTCGCCCGGGATGACGGTGAGCGT 4386 29 100.0 32 ............................. TTCGCCGAGGCCACCATGAAACGGCTGGTGGG 4325 29 93.1 32 ..................A.....G.... CCATTCATGGAGGGTGTAAGCCGGTGCCTCAA 4264 27 89.7 32 ........--..............G.... GTCGCCCGGATCGCCATGGCGGAGTCCTCCGG 4205 29 96.6 32 ........................G.... CCATTCATGGAGGGTGTAAGCCGGTGCCTCAA 4144 29 96.6 32 ........................G.... GTCGCCCGGATCGCCATGGCGGAGTCCTCCGG 4083 29 96.6 32 ........................G.... CGCGCGGCGCGTGTGTCGCCTGGCGGCGTAGG 4022 29 96.6 32 ..T.......................... GGAGCGAAGGCCCCGGCCTCGTTCAACCTCGC 3961 29 82.8 0 ..........T......C......T..TC | ========== ====== ====== ====== ============================= ================================ ================== 17 29 96.4 32 GTGCTCTCCGCGCAGGCGGAGGTGAGCCG # Left flank : ACGGCGCGCTCCCCTGGCCAGCGGTAGCTTCGATCCCGGCGCAGCCTGACCACTCGGCGCTGCGCGGACGGCCTCCGGCCTGAAGGCCGGCTCATGTTTGCTTGCTCCAGTACGACTTGCCACTCCCCCGAGTGACCACCGCCGCCATTCCGCCCGGCGGCTTCCGTGCCGGCGCTATCAACCCGTCACCGAGCCCACGGTCGGCGCGGGCTGCAAGCGTCGACGAGGCGGCTGTGGTCGTTGTGCAGGTGGCGGCGTCGCCGATGTTGTCCCAGACGTAGGCGCGGCGGTCCTGGTAGACGTCGCGTCGGTTGTCGCGGCCGATGCCAGTGTGGACGCGGACCTGGCGGTGGCCGTTGAGGCGGAGGTTGCTGAAGCGGTATGCGTGGCCGACAACGCCCCCGATCAAGACACTGGACCGATACATTCACAGGGGTGCACAGCACACGTTCCTTGATTCAAGAATCGGCAAAGCGCTTCCAACACCGCAGGTCGCAAAG # Right flank : TCCGCGTGAGCGGAGGTGGACCGTGAGCTGCCGTTCTGCACCCAAGGTCGTCAGCAGTCGACTTGGGAGATGGCAGGCACGTCGAGATCGTCCTCCGGGGCGACTTCGCTGAAGCTGTTCGCGTAGATGGGTTCGATAAAGACGTTGCTGTAGTCGGGCATCGCCGGGCGAGGGAGATTGGCAGCGATCGTGTTGTGCGGCTGCGGTGTTGAGGAAGGCATGAGACTCCTTGGTGTTCTACGGCTGTAAGCGGTGGTCGGGCTGTGATGGCTAGCGTGGTCGTGCCGGCGTCCGACGACTTCTGGATGCTGCGCGGGCCAGCCAAATCGTCGGGGGCCGACGCCGCGGCCCAGATGTCAGCAGGGTTCAGCTCCGCCGACGCAGCCGTGGAGACGATGCTGTTGGGCCCGTCCGGTGTGATGTCGTACCGGGTGTCAGTTCGGCGAGAGACTGCGAATCGCTCCAGATATTCGACTCGATGATCATGATATCCGCCCGTG # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCAGGCGGAGGTGAGCCG # Alternate repeat : GTGCTCTCCGCGCAGGCGGAGGTGGGCCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGGAGGCGGAGGTGAGCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.80,-11.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 13535-9251 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHQN01000201.1 Streptomyces sp. WAC01526 AA000092-201_WAC01526, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================================================================================================================== ================== 13534 29 89.7 32 .....T..............A...A.... ACGATGGCGTGGATGTGCGGGTGCCAGAGGTT 13473 29 89.7 119 .C......................A..G. CCGCGGACCGGTCAGCGCCTGCGAGAGGCCGTGTGGCCGGAAGATTCAGACGTGTACATGACCGGCGTTCCTTGAATCACGAATCGGCAAAGCGCTCCTAACACCGCAGGTCGCGAAGG 13325 29 82.8 32 ..C..........GA.........AA... GCCCGCCCCACGGACAGGGGGGCGGGCCTTCG 13264 29 82.8 32 ..C..........GA.........AA... TGCCGACGCGACCCCCACGAGCGCGTAGTGCA 13203 29 82.8 32 ..C..........GA.........AA... CCAGCCACGATCCAGCCGATCACCGGCGAGAG 13142 29 82.8 32 ..C..........GA.........AA... CAGTCCAAAGCGCCCAAGCCGGTGGAGCGGCC 13081 29 82.8 32 ..C..........GA.........AA... GTCGTCACCGCCGCGATGGGCCGGGCCTATGA 13020 29 82.8 32 ..C..........GA.........AA... GGACGCGACTCCGGGGCGGTTCGGAAGGACCC 12959 29 82.8 32 ..C..........GA.........AA... GAGTCAGCACGAGCCAGGGTGAGGACGGCCTG 12898 29 79.3 32 ..C.......G..GA.........AA... CGCACCCCCGGGCAGGCCACCGGCCGCCACTT 12837 29 82.8 32 ..C..........GA.........AA... TTCCGTGAGCAGGTGCAGGCCGAGATCGCCAA 12776 29 82.8 32 ..C..........GA.........AA... AGATGTCAGATCAGGGGGTGCGTCCGGCCAGA 12715 29 82.8 32 ..C..........GA.........AA... ACGGCCGCGCACCGGCTGACGAAGTGGGTGCC 12654 29 82.8 32 ..C..........GA.........AA... CCGTGGATCACGTCGCCGACGGCGAGGGGGCG 12593 29 82.8 32 ..C..........GA.........AA... GACGGCACCGTCGAGTCATTTGAGTGCGTCGC 12532 29 82.8 32 ..C..........GA.........AA... TTCATGCCCAACACCTCGCCGGTCGGCGGTCC 12471 29 82.8 32 ..C..........GA.........AA... GTCCGGATCGGGTCAGCGTCCGTGTGGATGAT 12410 29 82.8 32 ..C..........GA.........AA... GTCATCTCGGTGGCGCCGGGTACCGAGCGGAT 12349 29 82.8 32 ..C..........GA.........AA... TGGGCCTGGGCGCCCGTGGCGTAGGCGGTGAT 12288 29 82.8 32 ..C..........GA.........AA... CGGAGGAGGGCGCGGGGACCGAGGGTGGTGTA 12227 29 82.8 32 ..C..........GA.........AA... GCGGGGCGCTCGGCAACGAGCTGCTGCGCGGC 12166 29 82.8 32 ..C..........GA.........AA... GTGTGGCCGGGACCGTAGGTGTGGGGCTTGGC 12105 29 82.8 93 ..C..........GA.........AC... ATCCGGCACGGGTGGTCCGAGAAGATCACCCGGTGGTCTCCTCAAGAATGGAGGTGAACCGAACAAGGCGTCGATCGCCGTGGCCCGGACGAC 11983 29 79.3 32 ...G........AGA.........AT... GGTGATGAGTGTGAAGGGTTGCCGCATCGCCG 11922 29 75.9 202 ...GA......C.GA.........AA... CGCCGGGTCTCGCGGTTAGTGGTCACCGCGCCGGTACCCTCTGCAATGATCTTGTCCTCTCCACGCAGGCGGAGTAAGCGGTCGTGGGCCGGCCAGTGCCTGCGAGAGGCCGTGCGGCCCCGGTAGATTCAGGCGGGTGCATGACCGGCGTTCCTTGAATCACTAATTGGCAAAGCGCTCCTAACACCGCAGGTCGCGAAGG 11691 29 82.8 32 .AC.....................AA..C CAGCGGGGCACCGGTGTTGGACGCGACGAGTA 11630 29 86.2 32 .AC.....................AA... CCGTCTGGCGGCAGCGCGCCCACGCCGTCGAA 11569 29 86.2 32 .AC.....................AA... GCGCGGTTGCCCTTGCCCTGGCCGGCGCGGGC 11508 29 86.2 32 .AC.....................AA... GCGCTGGAGGCCGTGCGGCCGGTGTACCGCGA 11447 29 86.2 32 .AC.....................AA... TCGGGGATCTGCTGGACGCGGATGGCGTCGAT 11386 29 86.2 38 .GC.....................AA... GTCATCCAGTTGTCCCAGGCGGTCTTCCAGGCGGAGAT 11319 29 75.9 32 .GC......A...GAA.A........... AGTGGTGGGCCACGCATCGTCGGCTCACATCG 11258 29 86.2 32 .............GA.........AA... GCCCCGGCCGGAGCTGCGAACTCCACATGGCC 11197 29 82.8 31 ...A.........GA.........AA... CACTAACTCGCTACCCCCAGGAGACTCCGAA 11137 29 86.2 32 ...G.........GA......A....... TCGCCGCACGCATCCGGCGGCCGGATGTTCTC 11076 29 96.6 32 .....................A....... TCTCGATACAGCATCGGTATCCCCTCGTCGAG 11015 29 93.1 32 .........T..............A.... CCACGATCGACGGCACGCACCGCGTACGTCTC 10954 29 86.2 32 .CC..........C...........A... CGAATATGCCTGCGAGACGGGTGCACCTCCGT 10893 29 100.0 32 ............................. ACCTGCACGATGTCCTGGTGCCGGCTGGGGCC 10832 29 96.6 32 ........................A.... AAGTCCTTCGGCAGCATGCCGACGATCGATGT 10771 29 93.1 32 ........................AA... GCGGACGGTCTGTGGGCCGCCATGCGGCTGGG 10710 29 96.6 32 ........................A.... ATTCCGCCGGGCAGGGTGTAGTGCGTGTCGTC 10649 29 100.0 32 ............................. GTCGAGGTCCACGAGGCAAACCATCCCGACGC 10588 29 93.1 32 .C.......................A... TTGTCGGTCAGACCGTGGATGCCGCAGGGCTC 10527 29 100.0 32 ............................. GAGCTCCACGCCCCATGGACCAGTCCGCTCGA 10466 29 93.1 33 .C.......................A... GAAAGCGCCCCTGCGGTCCTCGTGGGAAGCATT 10404 29 96.6 25 ........................A.... CCGCAGGCGTTGCAGGGGCTCGCAA Deletion [10351] 10350 29 82.8 32 CC...GC.................A.... CTGTGCGGGATCGGTGAAAGCGGCCAGCAGGG G [10346] 10288 29 89.7 28 .......T....G...........A.... TCCGGGCGCGCGGCGTGCTGATTCCGGA 10227 29 79.3 180 ............TGA.....AAC...... CCGCGGGATGTCCGTCCGCCGAGCCGCATCTGGCGCTCTTTAGGCTGACGGAGTGAGTCGTCCCGGCCAGGGCAGTTGCTGTGAGGGGCCGTGTGGCTCGGTAGATTCAGGCGGGTGCATGACCGGCGTTCCTTGAATCACGAATTGGCAAAACGCCCCTAGCGGCGCAGGTCGCGAAGG 10018 29 100.0 32 ............................. TCGGTGACCTCTACCGCCAGCTCCGGGTCGAC 9957 29 100.0 32 ............................. CCAAGCTGTCGCCAATTGGCGACAGCGACAGC 9896 29 100.0 32 ............................. CAGGAGGGCCTGGTGCTGAGTCAGCATCGCTC 9835 29 100.0 32 ............................. CCATACGTCAATCCGTCGTCGCTGATCGCGCC 9774 29 100.0 32 ............................. TGGATCGAGGACTCGACCTTGGAGGCCCCGGA 9713 29 100.0 32 ............................. GAGACCGACCGTGGCTGACGACCGCGTGAACC 9652 29 100.0 32 ............................. GCGGGTTCATCACCACCCGGTCGTATCGGGGC 9591 29 100.0 32 ............................. GAGTTGCTGAGCACCGCGGCGGAGCGGGCGGA 9530 29 100.0 32 ............................. TCCGGGTCCTTGATGAGCTTTGTTGCCTGGTC 9469 29 100.0 32 ............................. ATGCGGATCAGGTGGCGGCGGATGTCCCAGGC 9408 29 93.1 39 ..........................AG. TGGGCCGCTCCAGCGCCTGCTCCACATCCGTCTTCCCGG 9340 29 100.0 32 ............................. GCGGTGCGGATCTCGGGAACGCTGCCGGCTTC 9279 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================================================================================================================================================================================== ================== 63 29 89.0 40 GTGCTCTCCGCGCAGGCGGAGGTGGGCCG # Left flank : CAAGAGTGCCGAGGTGAGAGGCGACCAGGGCCTGCGCCACGGACACAAGGCTGGTGACGCCGGGTGCCGCCTCCGGGGTGGCGTCCGGAGCGAGAGCGGCGAGTTCGGCGGGGTCGGCATCACAACGCCAACTCAGCGGCACGCACGGCGACATCATCACGTTGAACACAGAGCAGAACTCCAACTATGGCGAGTACCCGAAAGCCTCGAATGCGTGAACGATAAACTGGGCTGCATTTGCAGGAATTTGACGCACCATCCGATCAGCGCGGGGCATCAACATAGGGTTCGGCGAATCACCCGTGCAAGCGCTCTCGGCAACTGTCAGTAGGGCTGTATATGGTGGCAGCGGAGGCACTCCGCCCATGCGAACGGATCCCGTTAGACGACCCGAACACGCAAGCCGCGACGTCGTCGATCCTGCTGGCGCTGACCTGCTCATACGGCATCCGAAGATTGAGAATTGAATGGCAAAAAGCCTCAAACATCGGCGGTGGTAG # Right flank : TCTTTACCGGTGAGCAGGGCCGGTGGTGTGCGGTGGTGATTCGCCCGTGCGGATGCAGTCTCACAATGACTGGTGGGGAGCAGGGGCGGGAGCTGGCGACGTCGCAGGGCGTGGTGGCGCCTCGGGCAGGAGATATCGACCGGGAGTCGGTGGCTGAGAGGCTGCGGGTTGCCGCGGGTTAAGGCCGTATCGACCTTGCCGTGCACGATGCCGGAGGCGCTGGCATGTGGGTCAGTCGTCTTGCAGTGAGCGCAAAAGGCGTGCTCGTGTGTCAGACTTTCTGTCGCTTTCGGCCGTGTCGTCCGGCTTCGGGGTGGCGTGAGGAATGGTCTCTTCGGATGTGGTGTCGGCGTTGGCCAGCAGTGCCTCGTCGATCATCTTGCTGGAGCGGATGACGACGGACTCCGCTGGCTCTTGGGGCCAGACGGTAATGAGGTATCCCTCGACCGGCTCGTCACCGACTCCGTCCGGGTTGGTCGAGCGCCCCGATGCGTGGACGC # Questionable array : NO Score: 4.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:-0.39, 8:1, 9:0.50, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCAGGCGGAGGTGGGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCTCCGCGCAGGCGGAGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.10,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-29] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 46020-45734 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHQN01000007.1 Streptomyces sp. WAC01526 AA000092-7_WAC01526, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 46019 29 100.0 35 ............................. ATGCGGTCCTGGCAGTTGGGGCACAGGCCGGTGAT 45955 29 100.0 36 ............................. GGCATCGTCCTTGCGGGTGTAGAAGCGGCGGTTCGC 45890 29 100.0 34 ............................. ACAGCGAGGGCCGGTACGCCGAGGGCGCCATCCA 45827 29 96.6 35 ............T................ GTGATGCCGTGGACGAGGCGATGCCCGCTGGCGGG 45763 29 89.7 0 .G...................T.T..... | G [45746] ========== ====== ====== ====== ============================= ==================================== ================== 5 29 97.3 35 GTCGTCATCAGCCCTGGAGGGCTCGCAAC # Left flank : CAGGCGCCGGTTCTCTGTGCGGGGAGCGCCGCGCGTCGGAGCGCAGGTTCGTGTGGCGTTGGAGGCGGATCCCCGGTTCGTGGAAGCGCTGTGGTCCTGGGGGCTCGGCCTCGACACGGTGCAGGGGTTCGGATGGATCAAGTGAATTCGGGCGCGGCCGTAGGGGAGCGGTTGGGTGCGCTTACCTCCACGGGGCATCCGCTGCAGTGCGCGGGGGCGTGGGCGGTGGCGGTGATGGCCGGTCGGGAACGCCCGGATCAGGTGACCGCCGACGACCTGGAAGCCGTCGCGGAGATCGTCGGGCTAGATGCCGCACGCGCGGCTGTGGCCGCGAAGACCGACGCGCGCTACGACTGGTGGAAAGTGTTGTTCGCGCTGTATCCGAACTCCAAGGTGACGCACGCCGGGCGTCCGCGTGACGTAGCGGTTTTGAAGAATGAGCTGGCGGCGATGTTCGCGCCTGACGCCGCTGGGGGAGCGGCGATGCCGTGCACCCTCGG # Right flank : CGGACGGTCTGCGGCGAAAGCTGAGGACGCCACGGCCACTGACCGGCCCTGAACCGGCTGGTGAGCTGTGCCGCTCGCCGGCCACCACGTGCGCCGCAGGCTCGTGCCTGCGGCGCACCGCTGCGGCCAGGTGAGGAAAGGACCGCGAACGCGTCCTCTGCCCATGCTGCTGTGCCCGTGCGTCGGCTTCGAGGCCAGCACACAGCAGGGGGAATCCCAGCAAGACCGGACGGGTGGGCTACACCCGCTCGAACTCCACGTCGGTGCTCTCGCAGCCGGCGGCGAGCTTGCGCAGGGTGTCGCCCTCCGCGCGGTCGACGGTCAGCGACCAGCGGAGCTTGGTGCTCACCCAGTCGGCGAGGTAGGTGCACTGGGCGTCGGCAGCCGGCGGCATTCACTGGGCGGGGTCCTGGTCGGCTTTGGAGCGGTTGCTCTTGGCGGTGACGGCGACCAGGGAGCGTTCGGCGCCGAGGTCGTTGGCGTAAGCCTGACGACGGGCA # Questionable array : NO Score: 2.92 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCATCAGCCCTGGAGGGCTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.20,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 47461-47745 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHQN01000007.1 Streptomyces sp. WAC01526 AA000092-7_WAC01526, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================== ================== 47461 28 100.0 35 ............................ AAGTCGGCGGGGATCTTGACGCAGTTGCTCTCATG 47524 28 100.0 37 ............................ AGGTACTCGGCGCAGAGGCTGAGCGGGGCGATGCGGG 47589 28 100.0 36 ............................ ATGGCGAGCGACCGGCGCAGGATGAGGACCTGGGCA 47653 28 96.4 37 ...........G................ GTAGCGCCCGGGACTGATCGGATGTCAGTGAACAGCG 47718 28 92.9 0 ........................A..T | ========== ====== ====== ====== ============================ ===================================== ================== 5 28 97.9 36 TCGTCATCAGCCCGGGAGGGTTCGCAAC # Left flank : GGGTCACGCTCTCTGAGCAACCCGTACACCACGCCCCGCGCCGGGCCGTGCACATCCTCCCACCGCAGACTCGGCACATCCGCAGAGACATCCACCCTCACGCGCATCGCGACCTGCCACCACACGCCGGAGTCGAAGCCGAAGCCATGCCACTTCGCTCAACTGTCATGCCGGACAGGGTAGTTGAACTACCAGTGTTTGATGATAATTTTCTTGCATTTGTCATGAATAGAGCCAATGCGTGTTAAGTGAGATGCTGTTCAGGGAGTGCAGGGACGCGAAGACCCAGAAGCCAACTAAGCAAAAGCTAGCGGCCACCACTGACAACGTTCGCGACGGGCCTACCGCTGCGCGGAGCACGCTGACTCCTACCTTGCCCCCTCCGACCACCAGCCATCAAAACGCTGTGACCTGCACAGATGCACTACCGACGAGTCGCTGCAGCGCCGCCCCCAGGACCAAGCCCTGGACGCAGCCTGACCTGTGGCTTTAGCGTCGGG # Right flank : TAGCGGATGGAGGCCGAGATCCACCGTATGAACGCCGCTCCGTACGAGCCCTCGCGCGGCACCAGGCTTCGTCTTGAGCGCGGACCAATGTTGATGGCGGGAGGGACCCGGCGGTTAGCTCTCGTCTCTGTCGCCGATCGCTTGCTCAAGAAAGCTTGTTCGCCGCGTTGACCGCTTCCTGGCCGAGTTCCTCGAAGGAGATTTTCCAGCCTTTGCCTCAACCATCCAGGTTCTGCGCGCAGGGACAAGCGGCTCCAGTTCTTCGGAGGAATCGAGGTCATAGGCGATGCGGTCCCGGACGAGGTGGGTGCCGGCGGCGGGATCGAGCGATCCGTCGACGATCTGTCGGGCTCCGCCGGCCATCACCCACACTTCGTGGCTTGGTGCCAGCGGGCGTGCGGACTGTCGTCGGTGACAGTCCGTTACCTGAGCTTGGACATTGCTCGCAGCTCGCACCCGCTTTGTCAGTGGCGGGTGATACGTCTGTTCTTCAGCCAATC # Questionable array : NO Score: 2.96 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGTCATCAGCCCGGGAGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.50,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 53092-53570 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHQN01000007.1 Streptomyces sp. WAC01526 AA000092-7_WAC01526, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================ ================== 53092 29 100.0 37 ............................. GGGCCGGGGAGTGTGGGGTCGGCGCAGTATGCCTGCG 53158 29 100.0 34 ............................. ATCGCCGACACGGACTCAAGCTCCCTTCTCGAAG 53221 29 100.0 34 ............................. CTGACCAGTGTGATCAGAGGACCCCGAGAGCCTC 53284 29 96.6 36 .................T........... GTGTCAGGCCGAGCAGGCGGTCCGCGATTTCCCACA 53349 29 96.6 36 .C........................... TGGATTGCGTCGTGCAGTTCGTAGACGAAGACGGTG 53414 29 93.1 96 ..............T..........T... CCGGTCTACGGCAGGATCACCTCGGCGTGCATGATGCGGGGTGCCCCCGAAGGTGCATCCGCGTCCGCCAGGGCGCTGCAGACCTGGCGTCACAGT 53539 28 82.8 0 ...C.....GT...T..........-... | A,A,CC [53560,53562,53564] ========== ====== ====== ====== ============================= ================================================================================================ ================== 7 29 95.6 46 GTCGTCATCAGCCCGGGAGGGTTCGCAAC # Left flank : GGGCCGCCACACCTCGGCGCCGATCGCGGCTGGACGGCCGTCGAGCTTCAGCCGGAAACCCGCCTGACACAATAGGCGGCCCAGCCGGTATCCGTTCAACCCCGCATTGCGGTACTCCGTAAGCCGGCCGCGCCGCGCCGCAGGGGCGCGTTTCCGTCGACCGCCGCCAGGAACGCCAGCACCGCCCGGCGGGTGCGGGTCACCCGCAGCCACGGCTCCTGGTTGTCGTTCTGGCCAATGTTTCATAAATGGCATGCCGTTCAGGGAACGCAGGGACTCGGAAGCGCAGGACCCGGCTAGGCGAAAGCTAGCGGCCACCACTGACAACGGTCGCGGCGGGCCTACCGCTGCGCGGTGCGCACTGGCCCCTAGCTTGCTCCCTCCGCCCACCAGCCAACAAAACGCTGTGACCTGCACAGAAGCACTACCGAGGAGTCACCCGTTGCACCGCCCCCAGGACCAAGCCCTGGACGCAGGCTGACCTGTGGCTTTACCGTCGG # Right flank : CGCCCCCGCGCCCTTCGCTCCGCCTGCTACCGTCCCAACCCCCGGCGGCCGAACAGCCGTCGGAGCGAACGTGAGGCGAGGACGGTCGAGGGGTGGGCGTGGCGCAGGACAGGTTCGTCAACCCGTACACCTTCGTCCAGGTCCCCCGCGATGAGCCGGATGGCTGGCGTCAAGCCCCGTCCGGGCATGGCCGGTTGGTTCCCGATCGGTACTCCGGAGTCATCCGCGTCGAGCTGACGGCGCGCAGTCCGCTGCTGCTACGGAACGTGTACGACGGCGAACCGGGCTTTCCGCGCCGGAGGTTCCCGGGGTTCGAGGATCCGGTGCCGTTTCTGCCGGGATCCTCTCTGGCCGGGACGGTCCGGGCGGTGCACGAGACGCTGGCCGGCGGGTGCCTGCGGGTGTTCGACGCGGACTTCCGGCCCGGTTACCGGGACTCCGTGCAGGCGGGGCAGAAGCAGCGGTGGGTGCTGGCCCTGGTGGTGGCCGTCGACGCCGAC # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCATCAGCCCGGGAGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.50,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //