Array 1 13834-13506 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHANT010000019.1 Vibrio cholerae strain C19p.c Scaffold19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 13833 28 100.0 32 ............................ AGCACCTCCACCACCAACCAAAGCAGCAAGTC 13773 28 100.0 32 ............................ ATGTGGTGTTCGTTGCTAACATGGTCGATGGT 13713 28 100.0 32 ............................ AACAAGAGGCATTAAGCCGGTATCGAGAGAGG 13653 28 100.0 32 ............................ TGGTTGTTCACATGGGACGGAACAAGCCGCAG 13593 28 100.0 32 ............................ CAAGAGACGAGTTAATCCGAAATCTTGAGGGA 13533 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 99.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CCCATCAGAACATCAGGAATATGGATTAGCTTTTGCGTCTTTTTTGCCATTCATAGCATTTTTGTTCGGTGCTTTTTTGGGTTTTGTTAGCAGTAATAAATACGAGTTTCGTTTGGAATTTAATCACTTAGATGAAACGGGGATTCAATGGTTTACGGCGGCGAAAAGTAGAAAAGCTAGTGATTATGTATTGTTCAAAGAGCAAGAAATGGAGCTCAAGCGCAAAATCACATAACAAAGCGTTCAAGAGGGATTCGCAACGCGTAGCATTTTCGTTATGCGTTGATTTTATTGGTTTTTAGTGCAATGCGGTGAGTTGGTAGTCGCGTTGCTTACCCCTTAACGCGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAAGTTATTGATTTATATTAATAATAAATCGAGTTAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTTTTATTAACAATAGGTTACTGATACAGTTTCATA # Right flank : TATTGGTACTTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTTAAGAGGGATTCGCAACGCGCGGCATTTTCGTTATGCATTGATTTTATTAGTTTTTAGTGCAATGCGGTAAGTTAGTCGTTGCGTTGCTCACCCCTTAACGCGGCGTTATGTTTTCGGCTGAAACTGGCAAAAGGTTGCAGCTAATTATTGATATAATGAGCTTTTTTAGCTTATCTGTAAGGGATGTCATGACCCAATTATCCAAGATCATCTATAGAGAGAAAAACGGTTTTTCTTATTCGTGTTTCGAAACAAACAGTGACGATTGTAATTGTATGTGGAGAAAAGCCAATGAGCCGGAGAATATCTACACGATTGAGCGCATTGATATATTGCCGGCATTCCGCAGGCAAGGATTAGCTCGAAAATTGCTAAATCACGCTATCAAGCACATTAAAGGCGAGTGCCCAAAGGCTTGTATCGAAATCACCGCTGAGCCAGATGAAAATAGTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 94640-96231 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHANT010000010.1 Vibrio cholerae strain C19p.c Scaffold10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 94640 28 100.0 32 ............................ AAACGTTGAACATCCTGTAACTTCCTTTAAAA 94700 28 100.0 32 ............................ AGTTCGCGCCAATTGATGTGATGGCTTCTTTT 94760 28 100.0 32 ............................ GTGCCAAACCGCTTTGTTGCCGTTTAGGTTCT 94820 28 100.0 32 ............................ AATCCCGCCCCAACTAAAAAACAGGACACTCC 94880 28 100.0 33 ............................ TTCAAGCAATGCAAGGCAAGTCGCTGAGAAAAA 94941 28 100.0 32 ............................ TTCCAAAAGGAAATGTAAACTCAATCGATAAT 95001 28 100.0 32 ............................ ATGCGTATCCTGTTGTGCCATTTCCTCGGTCC 95061 28 100.0 33 ............................ AGTTCACGCCAGTTTTCAATGCCGGCCTCTTTT 95122 28 100.0 32 ............................ ATGATGCACGCTATCAACAAACACGATCGTCT 95182 28 100.0 32 ............................ TTGTACCCTAACTTTTCACATGGTGTCATTTT 95242 28 100.0 32 ............................ ATACAGCCGAGAAGAATTCGAAAAGGCATATG 95302 28 100.0 32 ............................ TTTATGTGGCGGAAAGACTCGCTTTCGATACC 95362 28 100.0 32 ............................ ACTCGGGTCGCTCAGAGCGCTATCGCAACTCT 95422 28 100.0 32 ............................ TTTTGATTGCCACAGCCAATAAATCCAAAGTA 95482 28 100.0 32 ............................ TGCGTCTTTTGCGTTAACGGTGGCAAACTTCA 95542 28 100.0 32 ............................ TCGAAAATTTGATTAAAGCAAAAAGATAAGAA 95602 28 100.0 32 ............................ ACACGATAGAAGTCGAACAAACAATTTACAAT 95662 28 100.0 32 ............................ TCAGCAATGTTGATAGTTGTCGGGTCTAGCCC 95722 28 100.0 33 ............................ TAGAGCGCCTTGAGGTATTCGACCGATTTGATT 95783 28 100.0 32 ............................ ATTAACCTAACCCCTCTTTTGGTTTAGCGTTT 95843 28 100.0 32 ............................ ACTATCTGTAACTGTTACAATTCTAGCCATAG 95903 28 100.0 32 ............................ AAGCCAAACCGAGCAAGAAGTACGAACAAATG 95963 28 100.0 32 ............................ AATACGGGATCGGCGTGTAGGTTCTTGCGCGA 96023 28 100.0 33 ............................ ATTGGCGGAGACAGTCAGCTAAGTCAATCCGAT 96084 28 100.0 32 ............................ AGCACCAAGCGCTAGGTGTGGATCATCGCCGC 96144 28 96.4 32 ...........A................ TGAGCGCTGAATGACTCGCAAGCGTGCATCAC 96204 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 27 28 99.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTATGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCTGGTAAACCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCGTTGTGTACCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAACAGCAAATTCCCGCTGTTTATTGAGATGCAGCCACAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCGACCGTACCGCATTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTGGTTTTTAACAAGGTAAAAAGATGATTTTTATCCTAACATTCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : ATCTGCTTTCCCCATCATATGGGTTATCTATGTGATGGGGATTCGCTCGCTAGCGGCCTGCCTGTGAATCCAAGTGGTATGTGTCTGGTACGCAAGGTTTTTCTGTACCCCAAGCTGTGCCCAGAGCGATTGGTTTATAAAGGAAATCCTGTTGATCTCCTTATCTAATGCGCTCTAGCATCACACCTGCTTCCATATGGTGGGTGTAAGGGAATTGGTCGAAGAGAGCAAAACGCACCACTTGATGGGTTTCCCCCAAGACTTGTAAGTTCTCTTGCAGCGTTTCTGGGTTACAAGAGATGTAGATAATGCGCTCATAACCTTGCACCATTTTACAGGTGTCGATATCCATGCCAGAGCGTGGTGGGTCGACAAAAATAGTGTTGCAACGGTAGCTTTGCAGATCAACTCCCGCATCCTTCAAGCGATTGAATTCGCGTTTGCCTTCCATCGCCTGAGTAAACTCTTCTGCCGACATGCGAATGATCTGCACGTTGCCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //