Array 1 431948-432768 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXKY01000001.1 Salmonella enterica strain BCW_1979 NODE_1_length_557342_cov_3.01906, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 431948 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 432009 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 432070 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 432131 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 432192 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 432253 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 432314 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 432375 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 432436 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 432497 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 432558 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 432619 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 432680 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 432741 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 449027-450690 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXKY01000001.1 Salmonella enterica strain BCW_1979 NODE_1_length_557342_cov_3.01906, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 449027 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 449088 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 449149 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 449210 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 449277 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 449338 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 449399 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 449460 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 449521 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 449582 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 449643 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 449704 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 449765 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 449826 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 449887 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 449948 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 450009 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 450070 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 450131 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 450234 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 450295 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 450356 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 450417 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 450478 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 450539 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 450600 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 450661 29 96.6 0 A............................ | A [450687] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //